Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCGGTTTAGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGC  >  NC_000913/1847084‑1847270
                                                                                             |                                                                                             
AGCGTTTTAGAAAATTAAGCCGCCAGCTTCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCG                                                                                               <  SRR4302532.2953792/94‑1 (MQ=60)
AGCGGTTTAGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCG                                                                                               >  SRR4302532.3872741/1‑94 (MQ=60)
AGCGGTTTAGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCG                                                                                               <  SRR4302532.2953793/94‑1 (MQ=60)
  CGGTTTAGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGG                                                                                             <  SRR4302532.347119/94‑1 (MQ=60)
   GGTTTAGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGC                                                                                            >  SRR4302532.4756568/1‑94 (MQ=60)
     TTTAGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGA                                                                                          <  SRR4302532.2948209/94‑1 (MQ=60)
       TAGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAG                                                                                        <  SRR4302532.2700012/94‑1 (MQ=60)
        AGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGGAGG                                                                                       >  SRR4302532.4228802/1‑94 (MQ=60)
        AGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGG                                                                                       >  SRR4302532.4228801/1‑94 (MQ=60)
            AATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGA                                                                                   <  SRR4302532.5605042/94‑1 (MQ=60)
            AATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCACGCGAAGGACGA                                                                                   <  SRR4302532.5222227/94‑1 (MQ=60)
             ATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGAC                                                                                  >  SRR4302532.4104520/1‑94 (MQ=60)
             ATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGAC                                                                                  >  SRR4302532.2071148/1‑94 (MQ=60)
              TTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACC                                                                                 <  SRR4302532.886268/94‑1 (MQ=60)
              TAAAGCGGCCAGCTGATTGGTTCTAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACC                                                                                 <  SRR4302532.2210851/94‑1 (MQ=60)
                AAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGC                                                                               >  SRR4302532.11267/1‑94 (MQ=60)
                   CCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAAT                                                                            >  SRR4302532.336740/1‑94 (MQ=60)
                   CCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAAT                                                                            <  SRR4302532.1050579/94‑1 (MQ=60)
                   CCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAAT                                                                            <  SRR4302532.4158418/94‑1 (MQ=60)
                    CGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATA                                                                           >  SRR4302532.1164226/1‑94 (MQ=60)
                    CGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATA                                                                           >  SRR4302532.5133116/1‑94 (MQ=60)
                       CAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCA                                                                        <  SRR4302532.3558057/94‑1 (MQ=60)
                        AGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCAC                                                                       <  SRR4302532.126123/94‑1 (MQ=60)
                         GCTGCTTGGTGCCGGTGCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACC                                                                      <  SRR4302532.1818312/94‑1 (MQ=60)
                         GCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACC                                                                      <  SRR4302532.1444047/94‑1 (MQ=60)
                         GCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACC                                                                      <  SRR4302532.464851/94‑1 (MQ=60)
                         GCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACC                                                                      <  SRR4302532.5583851/94‑1 (MQ=60)
                          CTGCTTGGTGCGAGTTCCGATCGTCTGCAGGAAACCTCATGGTTTGATATCGCCAACACTATTCGCCAGGCGAAGGACGGCCGCAATATCACCG                                                                     <  SRR4302532.497298/94‑1 (MQ=60)
                           TGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCAGCGG                                                                    >  SRR4302532.3817243/1‑94 (MQ=60)
                           TGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGG                                                                    >  SRR4302532.1769525/1‑94 (MQ=60)
                           TGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGG                                                                    <  SRR4302532.191725/94‑1 (MQ=60)
                             CTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTA                                                                  >  SRR4302532.5008888/1‑94 (MQ=60)
                               TGGTGCCAGTTCCGATCGTCTGCAGGAAACCTCACTGTTTGATATCGTCAACACTATTCACCAGGCGAAGGACGACCGCAATATCACCGGTATT                                                                <  SRR4302532.1944275/94‑1 (MQ=60)
                               TGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATT                                                                >  SRR4302532.1666808/1‑94 (MQ=60)
                               TGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATT                                                                <  SRR4302532.94906/94‑1 (MQ=60)
                                GGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTG                                                               >  SRR4302532.3913655/1‑94 (MQ=60)
                                GGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTG                                                               <  SRR4302532.171200/94‑1 (MQ=60)
                                 GTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGT                                                              >  SRR4302532.6178151/1‑94 (MQ=60)
                                 GTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGT                                                              >  SRR4302532.6178150/1‑94 (MQ=60)
                                 GTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGT                                                              <  SRR4302532.3148106/94‑1 (MQ=60)
                                  TGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATGTCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTG                                                             <  SRR4302532.1896926/94‑1 (MQ=60)
                                  TGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTG                                                             <  SRR4302532.5027024/94‑1 (MQ=60)
                                   GCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGA                                                            >  SRR4302532.1098646/1‑94 (MQ=60)
                                     CAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATG                                                          >  SRR4302532.1453216/1‑94 (MQ=60)
                                     CAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATG                                                          >  SRR4302532.6314776/1‑94 (MQ=60)
                                     CAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATG                                                          >  SRR4302532.4133529/1‑94 (MQ=60)
                                      AGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGG                                                         >  SRR4302532.1635618/1‑94 (MQ=60)
                                      AGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGG                                                         >  SRR4302532.3189011/1‑94 (MQ=60)
                                        TTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGAT                                                       >  SRR4302532.4598929/1‑94 (MQ=60)
                                        TTCCGATCCTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGTCGACCGCAATATCACCGGTATTGTGATGGAT                                                       <  SRR4302532.5447365/94‑1 (MQ=60)
                                         TCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATC                                                      >  SRR4302532.2023845/1‑94 (MQ=60)
                                         TCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATC                                                      >  SRR4302532.148052/1‑94 (MQ=60)
                                          CCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCT                                                     <  SRR4302532.5710014/94‑1 (MQ=60)
                                           CGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTG                                                    >  SRR4302532.3061872/1‑94 (MQ=60)
                                             ATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAA                                                  >  SRR4302532.915724/1‑94 (MQ=60)
                                              TCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAA                                                 <  SRR4302532.4859793/94‑1 (MQ=60)
                                                GTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAA                                               <  SRR4302532.682728/94‑1 (MQ=60)
                                                 TCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCCCCGGTATTGTGATGGATTTGAAAAAC                                              <  SRR4302532.6240559/94‑1 (MQ=60)
                                                  CTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACT                                             <  SRR4302532.1056665/94‑1 (MQ=60)
                                                  CTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACT                                             >  SRR4302532.1257866/1‑94 (MQ=60)
                                                   TGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTT                                            <  SRR4302532.1768663/94‑1 (MQ=60)
                                                   TGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTT                                            <  SRR4302532.3816883/94‑1 (MQ=60)
                                                    GCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTC                                           <  SRR4302532.5146498/94‑1 (MQ=60)
                                                    GCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTC                                           >  SRR4302532.2191586/1‑94 (MQ=60)
                                                     CAGGAAAACTCACTGTTAGATATCGTCACCACTATTCGCCAGGCGAAGGACGGCCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCG                                          <  SRR4302532.1584583/94‑1 (MQ=60)
                                                        GAAAACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAG                                       <  SRR4302532.4758981/94‑1 (MQ=60)
                                                         AAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGG                                      <  SRR4302532.3270917/94‑1 (MQ=60)
                                                          AAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGC                                     <  SRR4302532.2014169/94‑1 (MQ=60)
                                                           AACTCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCG                                    <  SRR4302532.4335258/94‑1 (MQ=60)
                                                            ACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGG                                   <  SRR4302532.779517/94‑1 (MQ=60)
                                                              TCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCG                                 >  SRR4302532.3767367/1‑94 (MQ=60)
                                                              TCACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCG                                 <  SRR4302532.2388526/94‑1 (MQ=60)
                                                               CACTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGA                                <  SRR4302532.4864154/94‑1 (MQ=60)
                                                               CACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGA                                >  SRR4302532.4222580/1‑94 (MQ=60)
                                                                ACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGAC                               >  SRR4302532.5610460/1‑94 (MQ=60)
                                                                 CTGTTTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACC                              <  SRR4302532.5573112/94‑1 (MQ=60)
                                                                    TTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAAC                           >  SRR4302532.1477772/1‑94 (MQ=60)
                                                                     TTGATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACC                          >  SRR4302532.5085282/1‑94 (MQ=60)
                                                                        ATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTC                       >  SRR4302532.2193562/1‑94 (MQ=60)
                                                                        ATATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTC                       <  SRR4302532.1857500/94‑1 (MQ=60)
                                                                        ATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTC                       >  SRR4302532.5390095/1‑94 (MQ=60)
                                                                         TATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAACCTTCGCAGGCGGCGACCAACCGTCT                      <  SRR4302532.1122441/94‑1 (MQ=60)
                                                                         TATCGTCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCACCCGTCT                      <  SRR4302532.6310200/94‑1 (MQ=60)
                                                                          ATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTA                     >  SRR4302532.1092851/1‑94 (MQ=60)
                                                                          ATCGCCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGTCGCCCAACCGTCTA                     >  SRR4302532.6147720/1‑94 (MQ=60)
                                                                            CGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATG                   <  SRR4302532.4647129/94‑1 (MQ=60)
                                                                             GTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGC                  >  SRR4302532.5161852/1‑94 (MQ=60)
                                                                              TCAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCA                 <  SRR4302532.5946185/94‑1 (MQ=60)
                                                                               CAACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAG                >  SRR4302532.2473186/1‑94 (MQ=60)
                                                                               CAACACTATTCGCCGGGCGAAGGACGACCGCAATATAACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAG                >  SRR4302532.5711529/1‑94 (MQ=60)
                                                                               CAACACTATTCGCCAGGCGACGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGAGACCCACCGTCTCTGCAG                >  SRR4302532.11597/1‑94 (MQ=60)
                                                                               CAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAG                <  SRR4302532.2754485/94‑1 (MQ=60)
                                                                               CAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAG                >  SRR4302532.11596/1‑94 (MQ=60)
                                                                                AACACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGT               >  SRR4302532.4941507/1‑94 (MQ=60)
                                                                                AACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGT               <  SRR4302532.4678607/94‑1 (MQ=60)
                                                                                  CACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTAC             >  SRR4302532.2137943/1‑94 (MQ=60)
                                                                                  CACTATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTAC             <  SRR4302532.187176/94‑1 (MQ=60)
                                                                                   ACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGCCTATGCAGTCCA            >  SRR4302532.5982361/1‑94 (MQ=60)
                                                                                    CTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACAT           >  SRR4302532.810960/1‑94 (MQ=60)
                                                                                     TATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATC          >  SRR4302532.3566027/1‑94 (MQ=60)
                                                                                      ATTCGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCG         <  SRR4302532.4198543/94‑1 (MQ=60)
                                                                                        TCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGC       <  SRR4302532.4430757/94‑1 (MQ=60)
                                                                                         CGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCA      >  SRR4302532.1735471/1‑94 (MQ=60)
                                                                                         CGCCGGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCA      <  SRR4302532.4856949/94‑1 (MQ=60)
                                                                                         CGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCA      >  SRR4302532.1698735/1‑94 (MQ=60)
                                                                                           CCGGGCGAAGGACGACCGCAATATCACCGGGATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAA    >  SRR4302532.6148692/1‑94 (MQ=60)
                                                                                           CCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAA    >  SRR4302532.2807753/1‑94 (MQ=60)
                                                                                            CGGGCGAAGGACGACCGCAATATCACCGGTATTGTGAT‑GATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGC  <  SRR4302532.554565/94‑1 (MQ=60)
                                                                                            CAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAG   <  SRR4302532.2865513/94‑1 (MQ=60)
                                                                                             |                                                                                             
AGCGGTTTAGTAAATTAAGCCGCCAGCTGCTTGGTGCCAGTTCCGATCGTCTGCAGGAAAACTCACTGTTTGATATCGTCAACACTATTCGCCAGGCGAAGGACGACCGCAATATCACCGGTATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGC  >  NC_000913/1847084‑1847270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑