Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCCTCACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACCAATATCGGTG  >  NC_000913/1949072‑1949258
                                                                                             |                                                                                             
CCCTCACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAAC                                                                                               <  SRR4302532.751866/94‑1 (MQ=60)
CCCTCACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAAC                                                                                               >  SRR4302532.5317287/1‑94 (MQ=60)
 CCTCACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATG                                                                                              <  SRR4302532.4265745/94‑1 (MQ=60)
  CTCACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGG                                                                                             <  SRR4302532.1006705/94‑1 (MQ=60)
  CTCACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGG                                                                                             <  SRR4302532.1006704/94‑1 (MQ=60)
   TCACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGG                                                                                            <  SRR4302532.3216458/94‑1 (MQ=60)
   CCACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGG                                                                                            <  SRR4302532.3524729/94‑1 (MQ=60)
    CACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGG                                                                                           <  SRR4302532.5638527/94‑1 (MQ=60)
    CACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGG                                                                                           >  SRR4302532.5610156/1‑94 (MQ=60)
     CCCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGT                                                                                          <  SRR4302532.1784674/94‑1 (MQ=60)
      CCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGGTGCATTAGGGGCAACCGACAGCGATATCGAAATCATCAAACGGCAATGGGGGG                                                                                         <  SRR4302532.352623/94‑1 (MQ=60)
      CCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTG                                                                                         <  SRR4302532.3078371/94‑1 (MQ=60)
      CCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTG                                                                                         <  SRR4302532.185742/94‑1 (MQ=60)
       CGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGC                                                                                        <  SRR4302532.2134863/94‑1 (MQ=60)
        CGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCG                                                                                       <  SRR4302532.2960188/94‑1 (MQ=60)
         GCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGT                                                                                      <  SRR4302532.3066447/94‑1 (MQ=60)
          CTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTT                                                                                     <  SRR4302532.441391/94‑1 (MQ=60)
          CTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTT                                                                                     >  SRR4302532.2209829/1‑94 (MQ=60)
           TAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTT                                                                                    >  SRR4302532.4491259/1‑94 (MQ=60)
            AAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTT                                                                                   <  SRR4302532.92655/94‑1 (MQ=60)
              AGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTAC                                                                                 <  SRR4302532.4803375/94‑1 (MQ=60)
              AGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTAC                                                                                 >  SRR4302532.3311369/1‑94 (MQ=60)
                TGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGG                                                                               <  SRR4302532.5192977/94‑1 (MQ=60)
                  TTGCCGGAAAATTGTGGCCACCATCCTGCTGCATTAGGTGCAACCGACAGCGATACCAAAATCATAAACCGTCAATGGGGTGCGTTTTA‑GGTAC                                                                            <  SRR4302532.1235213/94‑1 (MQ=50)
                  TTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTA                                                                             >  SRR4302532.2342086/1‑94 (MQ=60)
                  TTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTA                                                                             <  SRR4302532.3697385/94‑1 (MQ=60)
                  TTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTA                                                                             >  SRR4302532.1327864/1‑94 (MQ=60)
                   TGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTAC                                                                            <  SRR4302532.6142413/94‑1 (MQ=60)
                   TGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTAC                                                                            <  SRR4302532.444454/94‑1 (MQ=60)
                   TGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTAC                                                                            >  SRR4302532.755330/1‑94 (MQ=60)
                    GCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACG                                                                           <  SRR4302532.3719417/94‑1 (MQ=60)
                    GCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACG                                                                           <  SRR4302532.4576417/94‑1 (MQ=60)
                     CCCGAAAATTGGTGGCAACATCCTGCTGCATTAGTTGCAACCGACAGCGAAATCGAAATCATCAAACGTCACCGGGGGGCGTTTTACGGTACGG                                                                          >  SRR4302532.3852709/1‑94 (MQ=60)
                     CCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGG                                                                          >  SRR4302532.3852708/1‑94 (MQ=60)
                     CCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGG                                                                          <  SRR4302532.30057/94‑1 (MQ=60)
                       CGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGAT                                                                        <  SRR4302532.286941/94‑1 (MQ=60)
                       CGAAAATTGGTAGCAACATCCTGCTGCATTAGGTGCAGCCGACAGCGATATCGAAATCATCAAACGTCAATGGGCTGCGTTTTACGGTACGGAT                                                                        <  SRR4302532.4382965/94‑1 (MQ=60)
                         AAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCT                                                                      <  SRR4302532.5269404/94‑1 (MQ=60)
                         AAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCT                                                                      <  SRR4302532.4357141/94‑1 (MQ=60)
                           AATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGG                                                                    <  SRR4302532.5403863/94‑1 (MQ=60)
                           AATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGG                                                                    <  SRR4302532.6074815/94‑1 (MQ=60)
                            ATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGA                                                                   >  SRR4302532.5077105/1‑94 (MQ=60)
                             TTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAG                                                                  <  SRR4302532.5250369/94‑1 (MQ=60)
                             TTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAG                                                                  <  SRR4302532.1296298/94‑1 (MQ=60)
                              TGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCTATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGT                                                                 <  SRR4302532.3478130/94‑1 (MQ=60)
                                GTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTG                                                               <  SRR4302532.6332972/94‑1 (MQ=60)
                                GTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTG                                                               >  SRR4302532.713916/1‑94 (MQ=60)
                                 TGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGC                                                              <  SRR4302532.2715108/94‑1 (MQ=60)
                                  GGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCA                                                             <  SRR4302532.4823035/94‑1 (MQ=60)
                                    CAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAAT                                                           <  SRR4302532.3857632/94‑1 (MQ=60)
                                     AACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAGCGTGAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATT                                                          <  SRR4302532.2828324/94‑1 (MQ=60)
                                     AACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATT                                                          >  SRR4302532.67406/1‑94 (MQ=60)
                                     AACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATT                                                          >  SRR4302532.4773597/1‑94 (MQ=60)
                                     AACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATT                                                          <  SRR4302532.2828325/94‑1 (MQ=60)
                                     AACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATT                                                          <  SRR4302532.1216294/94‑1 (MQ=60)
                                     AACATCCTACTGCATTAGGTACAACCGACAGCGATATCCAAATCATCAAACGTCAACGTGTTGCGTTTTACGGTTCGGATCTGGAGTTGCAATT                                                          <  SRR4302532.4866816/94‑1 (MQ=60)
                                      ACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTA                                                         <  SRR4302532.976921/94‑1 (MQ=60)
                                      ACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTA                                                         <  SRR4302532.1404544/94‑1 (MQ=60)
                                      ACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTA                                                         >  SRR4302532.1361306/1‑94 (MQ=60)
                                       CATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTAC                                                        <  SRR4302532.3400940/94‑1 (MQ=60)
                                       CATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTAC                                                        >  SRR4302532.4595655/1‑94 (MQ=60)
                                       CATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTAC                                                        <  SRR4302532.3040551/94‑1 (MQ=60)
                                        ATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACG                                                       <  SRR4302532.5582312/94‑1 (MQ=60)
                                        ATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACG                                                       >  SRR4302532.658711/1‑94 (MQ=60)
                                          CCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCC                                                     >  SRR4302532.935862/1‑94 (MQ=60)
                                          CCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCC                                                     <  SRR4302532.4463017/94‑1 (MQ=60)
                                           CTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCG                                                    >  SRR4302532.2583243/1‑94 (MQ=60)
                                            TGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGC                                                   <  SRR4302532.2643492/94‑1 (MQ=60)
                                            TGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGC                                                   >  SRR4302532.4047743/1‑94 (MQ=60)
                                              CTGCATTAGGGGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCG                                                 >  SRR4302532.2050169/1‑94 (MQ=60)
                                               TGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGA                                                >  SRR4302532.2824571/1‑94 (MQ=60)
                                               TGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGA                                                >  SRR4302532.544519/1‑94 (MQ=60)
                                                 CATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGG                                              <  SRR4302532.5056906/94‑1 (MQ=60)
                                                  ATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGT                                             >  SRR4302532.2079110/1‑94 (MQ=60)
                                                  ATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGT                                             >  SRR4302532.2589923/1‑94 (MQ=60)
                                                  ATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGT                                             >  SRR4302532.1112188/1‑94 (MQ=60)
                                                  ATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGT                                             >  SRR4302532.4149471/1‑94 (MQ=60)
                                                  ATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGT                                             <  SRR4302532.4103596/94‑1 (MQ=60)
                                                   TTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTA                                            <  SRR4302532.3137646/94‑1 (MQ=60)
                                                   TTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTA                                            >  SRR4302532.5832131/1‑94 (MQ=60)
                                                    TAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTAT                                           <  SRR4302532.4140498/94‑1 (MQ=60)
                                                    TAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTAT                                           <  SRR4302532.3093119/94‑1 (MQ=60)
                                                    TAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTAT                                           <  SRR4302532.6328981/94‑1 (MQ=60)
                                                     AGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATC                                          >  SRR4302532.3024768/1‑94 (MQ=60)
                                                     AGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATC                                          >  SRR4302532.1858914/1‑94 (MQ=60)
                                                      GGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCG                                         <  SRR4302532.1931338/94‑1 (MQ=60)
                                                        GGCAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGAT                                       <  SRR4302532.5566785/94‑1 (MQ=60)
                                                          CAACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATAC                                     <  SRR4302532.1717155/94‑1 (MQ=60)
                                                          CAACCAACAGCGATAACAAAATCATCAAACGTCAATGGGGTGCGTTTAACGGTACGGATCTGGAGTTGCAATTACGACGCCGAGGTATCGATAC                                     <  SRR4302532.5670876/94‑1 (MQ=60)
                                                           AACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACA                                    >  SRR4302532.1525895/1‑94 (MQ=60)
                                                           AACCGACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACA                                    >  SRR4302532.209905/1‑94 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                >  SRR4302532.5692131/1‑94 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                <  SRR4302532.4564789/94‑1 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                >  SRR4302532.4335530/1‑94 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                <  SRR4302532.4407580/94‑1 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                <  SRR4302532.3362519/94‑1 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAATGGGGGGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                >  SRR4302532.4754898/1‑94 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                <  SRR4302532.3422562/94‑1 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                >  SRR4302532.668681/1‑94 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                >  SRR4302532.4614029/1‑94 (MQ=60)
                                                               GACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAG                                >  SRR4302532.3988581/1‑94 (MQ=60)
                                                                ACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGT                               >  SRR4302532.2941421/1‑94 (MQ=60)
                                                                ACAGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGT                               >  SRR4302532.5649033/1‑94 (MQ=60)
                                                                 CAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTG                              <  SRR4302532.5312934/94‑1 (MQ=60)
                                                                  AGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGT                             >  SRR4302532.1690798/1‑94 (MQ=60)
                                                                  AGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGT                             >  SRR4302532.5147245/1‑94 (MQ=60)
                                                                  AGCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCACCGAGGTATCGATACAATAGTGT                             >  SRR4302532.4625938/1‑94 (MQ=60)
                                                                   GCGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTT                            <  SRR4302532.1491452/94‑1 (MQ=60)
                                                                    CGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTA                           >  SRR4302532.6175252/1‑94 (MQ=60)
                                                                    CGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTA                           >  SRR4302532.5632340/1‑94 (MQ=60)
                                                                    CGATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTA                           >  SRR4302532.4732994/1‑94 (MQ=60)
                                                                     GATATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTAT                          <  SRR4302532.2992244/94‑1 (MQ=60)
                                                                      ATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATG                         <  SRR4302532.1916580/94‑1 (MQ=60)
                                                                      ATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATG                         <  SRR4302532.1968000/94‑1 (MQ=60)
                                                                       TATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGT                        <  SRR4302532.5083259/94‑1 (MQ=60)
                                                                       TATCGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGT                        >  SRR4302532.1722565/1‑94 (MQ=60)
                                                                        ATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTG                       <  SRR4302532.2343382/94‑1 (MQ=60)
                                                                          CGAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGG                     >  SRR4302532.2226096/1‑94 (MQ=60)
                                                                           GAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGA                    <  SRR4302532.5756651/94‑1 (MQ=60)
                                                                           GAAATCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGA                    >  SRR4302532.6304381/1‑94 (MQ=60)
                                                                               TCATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTC                >  SRR4302532.1139879/1‑94 (MQ=60)
                                                                                CATCAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCG               >  SRR4302532.4389755/1‑94 (MQ=60)
                                                                                CATCAAACGGCAACGGGGTGCTTTATACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCG               <  SRR4302532.5503574/94‑1 (MQ=60)
                                                                                   CAAACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACC            <  SRR4302532.1755391/94‑1 (MQ=60)
                                                                                      ACGTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAAGTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACCAAT         <  SRR4302532.3014607/94‑1 (MQ=60)
                                                                                        GTCAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACCAATAT       <  SRR4302532.321319/94‑1 (MQ=60)
                                                                                          CAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACCAATATCG     >  SRR4302532.2230356/1‑94 (MQ=60)
                                                                                          CAACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACCAATATCG     <  SRR4302532.3434952/94‑1 (MQ=60)
                                                                                          CAACGGGGAGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACCAATATCG     <  SRR4302532.1385175/94‑1 (MQ=60)
                                                                                           AACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATCCAATAGTGTTATGTGGGATCTCGACCAATATCGG    <  SRR4302532.353984/94‑1 (MQ=60)
                                                                                            ACGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACCAATATCGGT   <  SRR4302532.1397715/94‑1 (MQ=60)
                                                                                             CGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACCAATATCGGTG  <  SRR4302532.4248184/94‑1 (MQ=60)
                                                                                             |                                                                                             
CCCTCACCGGCTAAAGTGTTGCCCGAAAATTGGTGGCAACATCCTGCTGCATTAGGTGCAACCGACAGCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGCCGAGGTATCGATACAATAGTGTTATGTGGGATCTCGACCAATATCGGTG  >  NC_000913/1949072‑1949258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑