Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTGCAAGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACGCCCGCCA  >  NC_000913/2700125‑2700310
                                                                                             |                                                                                            
CCTGCAAGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGC                                                                                              <  SRR4302532.533152/94‑1 (MQ=60)
 CTGCAAGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTA                                                                                             >  SRR4302532.4960789/1‑94 (MQ=60)
  TGCAAGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCAC                                                                                            <  SRR4302532.4004200/94‑1 (MQ=60)
   GCAAGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACA                                                                                           <  SRR4302532.4376620/94‑1 (MQ=60)
    CAAGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAG                                                                                          >  SRR4302532.2724259/1‑94 (MQ=60)
     AAGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGA                                                                                         >  SRR4302532.310716/1‑94 (MQ=60)
      AGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGAC                                                                                        >  SRR4302532.4229873/1‑94 (MQ=60)
      AGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGAC                                                                                        >  SRR4302532.3856969/1‑94 (MQ=60)
      AGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGAC                                                                                        >  SRR4302532.3856968/1‑94 (MQ=60)
        AGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCG                                                                                      >  SRR4302532.2261692/1‑94 (MQ=60)
         GACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGC                                                                                     >  SRR4302532.2593588/1‑94 (MQ=60)
           CTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTG                                                                                   >  SRR4302532.5639918/1‑94 (MQ=60)
           CTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGAAAGCTG                                                                                   >  SRR4302532.1770416/1‑94 (MQ=60)
           CTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTG                                                                                   <  SRR4302532.2177634/94‑1 (MQ=60)
            TGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGT                                                                                  <  SRR4302532.5498600/94‑1 (MQ=60)
            TGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGT                                                                                  <  SRR4302532.4015638/94‑1 (MQ=60)
              AATGCAGTGCAAGTAATAGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGCGAAGTTCGTTGATGCACAGACCGCTGTAA                                                                                >  SRR4302532.4485876/1‑94 (MQ=60)
               ATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAA                                                                               <  SRR4302532.4070069/94‑1 (MQ=60)
                TGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAG                                                                              <  SRR4302532.3106544/94‑1 (MQ=60)
                 GCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGC                                                                             <  SRR4302532.4646529/94‑1 (MQ=60)
                 GCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGC                                                                             <  SRR4302532.2709369/94‑1 (MQ=60)
                    GTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTG                                                                          >  SRR4302532.5941763/1‑94 (MQ=60)
                    GTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTG                                                                          >  SRR4302532.1450125/1‑94 (MQ=60)
                    GTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTG                                                                          >  SRR4302532.1394615/1‑94 (MQ=60)
                    GTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTG                                                                          <  SRR4302532.3947003/94‑1 (MQ=60)
                    GTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTG                                                                          <  SRR4302532.2957781/94‑1 (MQ=60)
                     TGCAAGTAATCAAAAAAAAGTTCAAAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGA                                                                         >  SRR4302532.6191184/1‑94 (MQ=60)
                      GCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGAT                                                                        <  SRR4302532.6340880/94‑1 (MQ=60)
                      GCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGAT                                                                        >  SRR4302532.3097311/1‑94 (MQ=60)
                       CAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATA                                                                       >  SRR4302532.5030055/1‑94 (MQ=60)
                       CAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATA                                                                       >  SRR4302532.1022877/1‑94 (MQ=60)
                       CAAGTAATCGAAAAAAAGTTCACAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACATACCCCTGTAAAGCGTGATA                                                                       >  SRR4302532.4237850/1‑94 (MQ=60)
                        AAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATAC                                                                      >  SRR4302532.4709017/1‑94 (MQ=60)
                        AAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATAC                                                                      >  SRR4302532.1256061/1‑94 (MQ=60)
                        AAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATAC                                                                      >  SRR4302532.1255862/1‑94 (MQ=60)
                            AATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCT                                                                  >  SRR4302532.5062933/1‑94 (MQ=60)
                             ATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTT                                                                 <  SRR4302532.5615133/94‑1 (MQ=60)
                              TCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTA                                                                >  SRR4302532.4404395/1‑94 (MQ=60)
                              TCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTA                                                                <  SRR4302532.5882803/94‑1 (MQ=60)
                              TCGAAAAAAAGTTCAGAGAAACGCGTCTCGTATTCCAGGACGCGGGAGAGAAATTCGTTGATGCACTGACTGCTGTAAACCGGGCTACCGCTTA                                                                >  SRR4302532.4404394/1‑94 (MQ=53)
                               CGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAA                                                               >  SRR4302532.3817103/1‑94 (MQ=60)
                               CGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAA                                                               >  SRR4302532.4794790/1‑94 (MQ=60)
                                 AAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATG                                                             <  SRR4302532.910177/94‑1 (MQ=60)
                                 AAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATG                                                             <  SRR4302532.2272723/94‑1 (MQ=60)
                                 AAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATG                                                             >  SRR4302532.1509508/1‑94 (MQ=60)
                                   AAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGC                                                           >  SRR4302532.109309/1‑94 (MQ=60)
                                   AAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGC                                                           >  SRR4302532.1854722/1‑94 (MQ=60)
                                    AAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCA                                                          >  SRR4302532.2852402/1‑94 (MQ=60)
                                    AAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCA                                                          <  SRR4302532.3701636/94‑1 (MQ=60)
                                    AAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCA                                                          >  SRR4302532.2409303/1‑94 (MQ=60)
                                    AAAAGTTCAGAGAAGCGCGGCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGCGATACCACTTAATGGCA                                                          >  SRR4302532.708916/1‑94 (MQ=60)
                                       AGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCG                                                       >  SRR4302532.3293982/1‑94 (MQ=60)
                                       AGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCG                                                       >  SRR4302532.2079743/1‑94 (MQ=60)
                                         TTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCC                                                     <  SRR4302532.1745190/94‑1 (MQ=60)
                                         TTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCC                                                     >  SRR4302532.37981/1‑94 (MQ=60)
                                          TCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCA                                                    <  SRR4302532.5702371/94‑1 (MQ=60)
                                           CAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAG                                                   >  SRR4302532.4427638/1‑94 (MQ=60)
                                            AGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGC                                                  >  SRR4302532.2636441/1‑94 (MQ=60)
                                            AGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGC                                                  <  SRR4302532.3769088/94‑1 (MQ=60)
                                              AGAAGCGCGTCTCGTATTCCAGTACGCGGGAGATAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGA                                                >  SRR4302532.1116859/1‑94 (MQ=60)
                                              AGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGA                                                >  SRR4302532.3117500/1‑94 (MQ=60)
                                               GAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAG                                               <  SRR4302532.1122778/94‑1 (MQ=60)
                                               GAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAG                                               <  SRR4302532.5796593/94‑1 (MQ=60)
                                                 AGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGAC                                             >  SRR4302532.5317804/1‑94 (MQ=60)
                                                 AGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGAC                                             <  SRR4302532.2017770/94‑1 (MQ=60)
                                                  GCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACG                                            <  SRR4302532.2883566/94‑1 (MQ=60)
                                                     CGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCT                                         >  SRR4302532.5043900/1‑94 (MQ=60)
                                                      GTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTT                                        >  SRR4302532.5495196/1‑94 (MQ=60)
                                                        CTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCA                                      >  SRR4302532.3238079/1‑94 (MQ=60)
                                                        CTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCA                                      <  SRR4302532.3078127/94‑1 (MQ=60)
                                                        CTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCA                                      >  SRR4302532.483242/1‑94 (MQ=60)
                                                         TCGTGTTCCAGTACGGGGGAGAGAAGTTCGGTGATGCACAGCCCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAG                                     <  SRR4302532.3843499/94‑1 (MQ=60)
                                                         TCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAG                                     <  SRR4302532.5001943/94‑1 (MQ=60)
                                                         TCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAG                                     <  SRR4302532.6264084/94‑1 (MQ=60)
                                                          CGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGC                                    >  SRR4302532.1353885/1‑94 (MQ=60)
                                                           GTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCA                                   >  SRR4302532.1560264/1‑94 (MQ=60)
                                                            TATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCAC                                  <  SRR4302532.2119960/94‑1 (MQ=60)
                                                               TCCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGC                               <  SRR4302532.3534106/94‑1 (MQ=60)
                                                                CCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGGTTAATGGCAGCGCCAGCGAGCCGGCTTCAGCACTGCG                              >  SRR4302532.2353430/1‑94 (MQ=60)
                                                                CCAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCG                              <  SRR4302532.3955564/94‑1 (MQ=60)
                                                                 CAGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGC                             <  SRR4302532.3695428/94‑1 (MQ=60)
                                                                  AGTACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCA                            >  SRR4302532.3672803/1‑94 (MQ=60)
                                                                     ACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCG                         <  SRR4302532.1828854/94‑1 (MQ=60)
                                                                     ACGCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCG                         <  SRR4302532.4766082/94‑1 (MQ=60)
                                                                       GCGGGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTT                       <  SRR4302532.4937853/94‑1 (MQ=60)
                                                                       GCGGGAGAGAAGATCGTTGATGTACAGACCGCTGTAAAGCGAGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTACAGCACTGCGCAGCGAT                       <  SRR4302532.5681767/94‑1 (MQ=60)
                                                                        CGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGATTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTT                      >  SRR4302532.871343/1‑94 (MQ=60)
                                                                         GGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTT                     >  SRR4302532.5527027/1‑94 (MQ=60)
                                                                         GGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTT                     <  SRR4302532.6036266/94‑1 (MQ=60)
                                                                         GGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTT                     >  SRR4302532.5209952/1‑94 (MQ=60)
                                                                         GGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTT                     >  SRR4302532.6310125/1‑94 (MQ=60)
                                                                          GGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTG                    <  SRR4302532.5847350/94‑1 (MQ=60)
                                                                          GGAGAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTG                    <  SRR4302532.274888/94‑1 (MQ=60)
                                                                            AGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGAC                  <  SRR4302532.3620204/94‑1 (MQ=60)
                                                                            AGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGAC                  >  SRR4302532.1038105/1‑94 (MQ=60)
                                                                             GAGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACT                 >  SRR4302532.5654270/1‑94 (MQ=60)
                                                                              AGAAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTT                >  SRR4302532.1549635/1‑94 (MQ=60)
                                                                              AGAAGCTCGTTGATGCACAGACCGCTGTCAAGCGTGATACCGCTTAATGGCAGCGCCAGCGCGACCGCTTCAGCACCGCGCAGCGTTTTGACTT                >  SRR4302532.1549636/1‑94 (MQ=60)
                                                                               GAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTC               <  SRR4302532.126807/94‑1 (MQ=60)
                                                                               GAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTC               >  SRR4302532.3873627/1‑94 (MQ=60)
                                                                                AAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCATCACTGCGCAGCGTTTTGACTTCG              >  SRR4302532.3642107/1‑94 (MQ=60)
                                                                                AAGTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCG              >  SRR4302532.2632587/1‑94 (MQ=60)
                                                                                  GTTCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCC            <  SRR4302532.3237498/94‑1 (MQ=60)
                                                                                    TCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCAC          <  SRR4302532.2462397/94‑1 (MQ=60)
                                                                                    TCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCAC          <  SRR4302532.1353966/94‑1 (MQ=60)
                                                                                    TCGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCAC          <  SRR4302532.2180448/94‑1 (MQ=60)
                                                                                     CGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACG         <  SRR4302532.4112762/94‑1 (MQ=60)
                                                                                     CGTTGATGCACAGCCCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACG         <  SRR4302532.4579314/94‑1 (MQ=60)
                                                                                     CGTTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACCTCGCCACG         <  SRR4302532.3984762/94‑1 (MQ=60)
                                                                                      GTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACGC        >  SRR4302532.740030/1‑94 (MQ=60)
                                                                                       TTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACGCC       >  SRR4302532.201582/1‑94 (MQ=60)
                                                                                       TTGATGCACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACGCC       >  SRR4302532.5096610/1‑94 (MQ=60)
                                                                                        TGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGGGTTTTGACTTCGTCACGACC      >  SRR4302532.4507795/1‑94 (MQ=60)
                                                                                           TGTACCGACCGCTGTAAAGCGTGATACCGCTTACTGGCAGCGCCAGCGAGACGGCTTCCTCACTGCGCAGCGGTTTGACTTgccaacgccacac   >  SRR4302532.4785107/1‑81 (MQ=60)
                                                                                           TGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACGCCCGCC   >  SRR4302532.4785108/1‑94 (MQ=60)
                                                                                           TGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACGCCCGCC   >  SRR4302532.1030642/1‑94 (MQ=60)
                                                                                            GTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACGCCCGCCA  >  SRR4302532.5456220/1‑94 (MQ=60)
                                                                                             |                                                                                            
CCTGCAAGAGACTGAATGCAGTGCAAGTAATCGAAAAAAAGTTCAGAGAAGCGCGTCTCGTATTCCAGTACGCGGGAGAGAAGTTCGTTGATGTACAGACCGCTGTAAAGCGTGATACCGCTTAATGGCAGCGCCAGCGAGACGGCTTCAGCACTGCGCAGCGTTTTGACTTCGCCACGCCCGCCA  >  NC_000913/2700125‑2700310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑