Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CACCCAACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAACGGCACAAT  >  NC_000913/3050369‑3050555
                                                                                             |                                                                                             
CACCCAACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGT                                                                                               >  SRR4302532.2386344/1‑94 (MQ=60)
CACCCAACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGG                                                                                               >  SRR4302532.5492928/1‑94 (MQ=60)
 CCCCAACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTG                                                                                              <  SRR4302532.3937072/94‑1 (MQ=60)
 CCCCAACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCG                                                                                              <  SRR4302532.2863555/94‑1 (MQ=60)
   CCAACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCC                                                                                            >  SRR4302532.5784684/1‑94 (MQ=60)
   CCAACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCC                                                                                            >  SRR4302532.2055029/1‑94 (MQ=60)
      ACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAC                                                                                         >  SRR4302532.2276285/1‑94 (MQ=60)
      ACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAA                                                                                         >  SRR4302532.2270356/1‑94 (MQ=60)
       CCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAAC                                                                                        >  SRR4302532.2550467/1‑94 (MQ=60)
       CCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGGGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAAC                                                                                        >  SRR4302532.620154/1‑94 (MQ=60)
       CCGAGGGTGCCCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAAC                                                                                        <  SRR4302532.5314429/94‑1 (MQ=60)
        CGATGGTGCGCTGCGCCAGCACATCGCGTGCCGGGATGAATAATTCCATCGTCATCAGCCCGATGTTGCCCCCGACAACCAGCGGCGCCCAACG                                                                                       <  SRR4302532.4088647/94‑1 (MQ=60)
        CGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCACCG                                                                                       >  SRR4302532.1814998/1‑94 (MQ=60)
        CGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACG                                                                                       >  SRR4302532.6314088/1‑94 (MQ=60)
          AGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGT                                                                                     >  SRR4302532.5425360/1‑94 (MQ=60)
              TGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGC                                                                                 <  SRR4302532.3420234/94‑1 (MQ=60)
                    GCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAG                                                                           <  SRR4302532.3565079/94‑1 (MQ=60)
                    GCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAG                                                                           <  SRR4302532.3209156/94‑1 (MQ=60)
                     CGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGA                                                                          <  SRR4302532.570828/94‑1 (MQ=60)
                      GCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGAT                                                                         <  SRR4302532.3764199/94‑1 (MQ=60)
                      GCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGAT                                                                         <  SRR4302532.5164663/94‑1 (MQ=60)
                       CCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATG                                                                        >  SRR4302532.5648611/1‑94 (MQ=60)
                       CCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATG                                                                        <  SRR4302532.713720/94‑1 (MQ=60)
                       CCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATG                                                                        <  SRR4302532.4057071/94‑1 (MQ=60)
                         AGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTA                                                                      <  SRR4302532.5038067/94‑1 (MQ=60)
                         AGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTA                                                                      <  SRR4302532.1376591/94‑1 (MQ=60)
                          GCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTAC                                                                     <  SRR4302532.1572428/94‑1 (MQ=60)
                          GCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTAC                                                                     >  SRR4302532.6068485/1‑94 (MQ=60)
                             CATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAG                                                                  <  SRR4302532.6317052/94‑1 (MQ=60)
                             CATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAG                                                                  <  SRR4302532.3005367/94‑1 (MQ=60)
                             CATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAG                                                                  <  SRR4302532.4416691/94‑1 (MQ=60)
                             CATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAG                                                                  <  SRR4302532.4140595/94‑1 (MQ=60)
                             CATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAG                                                                  >  SRR4302532.2350911/1‑94 (MQ=60)
                              ATCGCGTGCCGCGGTGAATAATTCCTACGTCATCAGCCCGATGTTGCGCCCAACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGG                                                                 <  SRR4302532.1497677/94‑1 (MQ=60)
                                CGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCT                                                               <  SRR4302532.1372561/94‑1 (MQ=60)
                                CGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCT                                                               <  SRR4302532.1694668/94‑1 (MQ=60)
                                  CGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGT                                                             >  SRR4302532.760000/1‑94 (MQ=60)
                                   GTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTC                                                            >  SRR4302532.843459/1‑94 (MQ=60)
                                    TGCCGGTGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCC                                                           <  SRR4302532.6244188/94‑1 (MQ=60)
                                    TGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCC                                                           <  SRR4302532.2440920/94‑1 (MQ=60)
                                     GCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGTAAAAAGATGTACAAGGCTGTCCG                                                          <  SRR4302532.5519414/94‑1 (MQ=60)
                                       CGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTG                                                        <  SRR4302532.2650394/94‑1 (MQ=60)
                                       CGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTG                                                        <  SRR4302532.2807770/94‑1 (MQ=60)
                                       CGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTG                                                        >  SRR4302532.1789140/1‑94 (MQ=60)
                                         TGGTGAATAATTCCATCGTCATCAGCCCGATGATCCGCCCGACAGCTAGCTGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGAC                                                      <  SRR4302532.649515/94‑1 (MQ=60)
                                         GGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGAC                                                      <  SRR4302532.4142911/94‑1 (MQ=60)
                                         GGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGAC                                                      <  SRR4302532.3848749/94‑1 (MQ=60)
                                         GGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGAC                                                      >  SRR4302532.3512352/1‑94 (MQ=60)
                                          GGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACG                                                     <  SRR4302532.5656366/94‑1 (MQ=60)
                                           GTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGC                                                    <  SRR4302532.4995972/94‑1 (MQ=60)
                                            TGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGGGACGCA                                                   >  SRR4302532.2166858/1‑94 (MQ=60)
                                              AATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAA                                                 <  SRR4302532.5567618/94‑1 (MQ=60)
                                              AATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAA                                                 >  SRR4302532.348703/1‑94 (MQ=60)
                                               ATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAAT                                                <  SRR4302532.3132153/94‑1 (MQ=60)
                                               ATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAAT                                                >  SRR4302532.2450167/1‑94 (MQ=60)
                                                TAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATG                                               <  SRR4302532.6356917/94‑1 (MQ=60)
                                                TAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATG                                               <  SRR4302532.1474721/94‑1 (MQ=60)
                                                 AATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGG                                              <  SRR4302532.5393424/94‑1 (MQ=60)
                                                 AATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGG                                              <  SRR4302532.102385/94‑1 (MQ=60)
                                                  ATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGT                                             <  SRR4302532.6007307/94‑1 (MQ=60)
                                                   TTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTT                                            <  SRR4302532.3172002/94‑1 (MQ=60)
                                                    TCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTG                                           >  SRR4302532.2726163/1‑94 (MQ=60)
                                                     CCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGC                                          <  SRR4302532.4413288/94‑1 (MQ=60)
                                                      CATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCT                                         <  SRR4302532.2334601/94‑1 (MQ=60)
                                                      CATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGGGACGCCAATGGTTGCT                                         >  SRR4302532.4888791/1‑94 (MQ=60)
                                                      CATCGTCATCAGCCCGATGTCGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCT                                         <  SRR4302532.5731337/94‑1 (MQ=60)
                                                       ATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTT                                        >  SRR4302532.451513/1‑94 (MQ=60)
                                                       ATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTT                                        <  SRR4302532.3217228/94‑1 (MQ=60)
                                                       ATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTT                                        <  SRR4302532.2311976/94‑1 (MQ=60)
                                                       ATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTT                                        >  SRR4302532.114986/1‑94 (MQ=60)
                                                       ATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTT                                        >  SRR4302532.2977413/1‑94 (MQ=60)
                                                       ATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTT                                        <  SRR4302532.3064679/94‑1 (MQ=60)
                                                       ATCGTCATCAGCCCGATGCTGCGCCCGACAACCAGCGGTGCCCAACAGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGGTT                                        >  SRR4302532.451512/1‑94 (MQ=60)
                                                         CGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCG                                      <  SRR4302532.3087462/94‑1 (MQ=60)
                                                         CGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCG                                      >  SRR4302532.1519574/1‑94 (MQ=60)
                                                          GTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGC                                     >  SRR4302532.662931/1‑94 (MQ=60)
                                                           TCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCG                                    <  SRR4302532.1849212/94‑1 (MQ=60)
                                                            CATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGA                                   >  SRR4302532.5375216/1‑94 (MQ=60)
                                                              TCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATC                                 <  SRR4302532.2708311/94‑1 (MQ=60)
                                                              TCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATC                                 <  SRR4302532.2973513/94‑1 (MQ=60)
                                                              TCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATC                                 <  SRR4302532.5521032/94‑1 (MQ=60)
                                                              TCAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATC                                 <  SRR4302532.4713694/94‑1 (MQ=60)
                                                               CAGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCG                                <  SRR4302532.4023222/94‑1 (MQ=60)
                                                                CGCCCGATGGTGCGGCCGCCAACCAGCGGCGCCGAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTACGCGATCGC                               <  SRR4302532.6355353/94‑1 (MQ=60)
                                                                AGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGC                               >  SRR4302532.5591553/1‑94 (MQ=60)
                                                                AGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGC                               >  SRR4302532.1718010/1‑94 (MQ=60)
                                                                AGCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGC                               >  SRR4302532.3324146/1‑94 (MQ=60)
                                                                 GCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCT                              >  SRR4302532.2606833/1‑94 (MQ=60)
                                                                 GCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCT                              >  SRR4302532.3837830/1‑94 (MQ=60)
                                                                 GCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCT                              <  SRR4302532.1520033/94‑1 (MQ=60)
                                                                 GCCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCT                              <  SRR4302532.2510112/94‑1 (MQ=60)
                                                                  CCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTC                             >  SRR4302532.2451074/1‑94 (MQ=60)
                                                                  CCCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGGTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTC                             >  SRR4302532.3598821/1‑94 (MQ=60)
                                                                   CCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCT                            <  SRR4302532.5169391/94‑1 (MQ=60)
                                                                   CCGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCT                            <  SRR4302532.2705152/94‑1 (MQ=60)
                                                                   CAGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTCCAAGGTTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCT                            <  SRR4302532.3322534/94‑1 (MQ=60)
                                                                    CGATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTG                           >  SRR4302532.3548119/1‑94 (MQ=60)
                                                                      ATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTC                         <  SRR4302532.3600698/94‑1 (MQ=60)
                                                                      ATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTC                         >  SRR4302532.6356273/1‑94 (MQ=60)
                                                                      ATGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTC                         <  SRR4302532.4325566/94‑1 (MQ=60)
                                                                       TGTTGCGCCCGACAACNAGCGGTGCCCAACGGTTGGCAAANAGATGTACAAGGCTGTCCNTGACGCCAANGGTTGCTTCGCGATCGCTCTGTCG                        <  SRR4302532.5302986/94‑1 (MQ=60)
                                                                       TGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCG                        >  SRR4302532.5416027/1‑94 (MQ=60)
                                                                       TGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCG                        >  SRR4302532.4381511/1‑94 (MQ=60)
                                                                       TGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCG                        <  SRR4302532.1873961/94‑1 (MQ=60)
                                                                       TGTTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCG                        <  SRR4302532.3051607/94‑1 (MQ=60)
                                                                        GTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGC                       >  SRR4302532.4767823/1‑94 (MQ=60)
                                                                         TTGCGCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGAC                      <  SRR4302532.560215/94‑1 (MQ=60)
                                                                             GCCCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTG                  <  SRR4302532.4604173/94‑1 (MQ=60)
                                                                              CCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGC                 >  SRR4302532.166185/1‑94 (MQ=60)
                                                                              CCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGC                 >  SRR4302532.3310696/1‑94 (MQ=60)
                                                                               CCGACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCT                >  SRR4302532.3996996/1‑94 (MQ=60)
                                                                                 GACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGA              >  SRR4302532.2621785/1‑94 (MQ=60)
                                                                                  ACAACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGAT             <  SRR4302532.1913753/94‑1 (MQ=60)
                                                                                     ACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAAC          <  SRR4302532.5942540/94‑1 (MQ=60)
                                                                                     ACCAGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAAC          <  SRR4302532.5367758/94‑1 (MQ=60)
                                                                                        AGCGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAACGGC       >  SRR4302532.2528483/1‑94 (MQ=60)
                                                                                          CGGCGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAACGGCAC     >  SRR4302532.3991062/1‑94 (MQ=60)
                                                                                           GGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAACGGCACA    >  SRR4302532.4830528/1‑94 (MQ=60)
                                                                                             TGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAACGGCACAAT  <  SRR4302532.5014678/94‑1 (MQ=60)
                                                                                             TGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAACGGCACAAT  <  SRR4302532.6321033/94‑1 (MQ=60)
                                                                                             TGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAACGGCACAAT  <  SRR4302532.2304168/94‑1 (MQ=60)
                                                                                             GGCCCAACGGTAGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAACGGCACAAT  <  SRR4302532.5633233/94‑1 (MQ=60)
                                                                                             |                                                                                             
CACCCAACCGAGGGTGCGCTGCGCCAGCACATCGCGTGCCGGGGTGAATAATTCCATCGTCATCAGCCCGATGTTGCGCCCGACAACCAGCGGTGCCCAACGGTTGGCAAAAAGATGTACAAGGCTGTCCGTGACGCCAATGGTTGCTTCGCGATCGCTCTGTCGACGCTGCTGATAACGGCACAAT  >  NC_000913/3050369‑3050555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑