Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTCACCAGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACTCTCGGCGCGGTA  >  NC_000913/3150137‑3150322
                                                                                             |                                                                                            
GTCACCAGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGT                                                                                              >  SRR4302532.2837370/1‑94 (MQ=60)
  CACCAGTACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCAT                                                                                            >  SRR4302532.1001642/1‑94 (MQ=60)
  CACCAGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTAT                                                                                            <  SRR4302532.5730571/94‑1 (MQ=60)
  CACCAGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTAT                                                                                            >  SRR4302532.2058610/1‑94 (MQ=60)
  CACCAGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTAT                                                                                            >  SRR4302532.4295318/1‑94 (MQ=60)
     CAGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAA                                                                                         >  SRR4302532.2162435/1‑94 (MQ=60)
     CAGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAA                                                                                         >  SRR4302532.1377485/1‑94 (MQ=60)
      AGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAA                                                                                        <  SRR4302532.3368883/94‑1 (MQ=60)
      AGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAA                                                                                        <  SRR4302532.1851553/94‑1 (MQ=60)
        CACGCCATTTGCGCAAATTGTCTGCTTTATGCCAATTCTTCAGGCTGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAAC                                                                                      <  SRR4302532.2501621/94‑1 (MQ=60)
        CACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAAC                                                                                      >  SRR4302532.5530360/1‑94 (MQ=60)
        CACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAAC                                                                                      <  SRR4302532.4934707/94‑1 (MQ=60)
          CGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAG                                                                                    <  SRR4302532.4224455/94‑1 (MQ=60)
            CCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGGCATCCAGACGCATAAAAACAGGA                                                                                  >  SRR4302532.4443713/1‑94 (MQ=60)
             CATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAA                                                                                 >  SRR4302532.678366/1‑94 (MQ=60)
             CATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAA                                                                                 >  SRR4302532.4115208/1‑94 (MQ=60)
             CATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAA                                                                                 <  SRR4302532.6043446/94‑1 (MQ=60)
             CATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAA                                                                                 <  SRR4302532.3013200/94‑1 (MQ=60)
             CATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAA                                                                                 >  SRR4302532.5332463/1‑94 (MQ=60)
             CATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAA                                                                                 >  SRR4302532.2417782/1‑94 (MQ=60)
             CATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAA                                                                                 >  SRR4302532.990116/1‑94 (MQ=60)
             CATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGAAATCCAGACGCATAAAAACAGGAA                                                                                 >  SRR4302532.5332464/1‑94 (MQ=60)
               TTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATC                                                                               <  SRR4302532.2332932/94‑1 (MQ=60)
               TTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATC                                                                               <  SRR4302532.4974993/94‑1 (MQ=60)
                 TGCGAAAATTTTCTGCTTTATGCCAATTTTTCAGGATGCGCCCGCGAATATTCATGCTAGTTCAGACATCCAGACGTATAAAAACAGGAATCCC                                                                             >  SRR4302532.940355/1‑94 (MQ=60)
                 TGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCC                                                                             <  SRR4302532.4874104/94‑1 (MQ=60)
                 TGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCC                                                                             >  SRR4302532.800500/1‑94 (MQ=60)
                  GCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCG                                                                            <  SRR4302532.2020843/94‑1 (MQ=60)
                   CGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGA                                                                           <  SRR4302532.3260278/94‑1 (MQ=60)
                   CGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGA                                                                           >  SRR4302532.1089162/1‑94 (MQ=60)
                   CGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGA                                                                           >  SRR4302532.6039707/1‑94 (MQ=60)
                    GAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGAC                                                                          <  SRR4302532.658233/94‑1 (MQ=60)
                    GAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGAC                                                                          >  SRR4302532.356603/1‑94 (MQ=60)
                      AAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACAT                                                                        <  SRR4302532.3768928/94‑1 (MQ=60)
                        ATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCCTGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGG                                                                      >  SRR4302532.5439725/1‑94 (MQ=60)
                         TTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGC                                                                     >  SRR4302532.2910535/1‑94 (MQ=60)
                         TTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGAAATGGC                                                                     <  SRR4302532.5964545/94‑1 (MQ=60)
                          TTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCG                                                                    <  SRR4302532.172281/94‑1 (MQ=60)
                          TTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCG                                                                    <  SRR4302532.172277/94‑1 (MQ=60)
                          TTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCG                                                                    <  SRR4302532.1943445/94‑1 (MQ=60)
                          TTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCG                                                                    >  SRR4302532.6004400/1‑94 (MQ=60)
                          TTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCG                                                                    <  SRR4302532.5340470/94‑1 (MQ=60)
                           TTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGG                                                                   <  SRR4302532.3380618/94‑1 (MQ=60)
                             CTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGAC                                                                 >  SRR4302532.4529019/1‑94 (MQ=60)
                              TGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACA                                                                >  SRR4302532.803029/1‑94 (MQ=60)
                                CTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAA                                                              <  SRR4302532.3822741/94‑1 (MQ=60)
                                CTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAA                                                              >  SRR4302532.5469995/1‑94 (MQ=60)
                                CTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAA                                                              >  SRR4302532.1422346/1‑94 (MQ=60)
                                 TTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAA                                                             <  SRR4302532.86769/94‑1 (MQ=60)
                                 TTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAA                                                             <  SRR4302532.86768/94‑1 (MQ=60)
                                  TTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAA                                                            >  SRR4302532.2824774/1‑94 (MQ=60)
                                  TTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAA                                                            >  SRR4302532.3297933/1‑94 (MQ=60)
                                    ATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGTCATGGCGGACAAAAAGC                                                          <  SRR4302532.6060134/94‑1 (MQ=60)
                                     TGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCT                                                         >  SRR4302532.4851978/1‑94 (MQ=60)
                                     TGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCT                                                         <  SRR4302532.2632391/94‑1 (MQ=60)
                                       CCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTG                                                       <  SRR4302532.24684/94‑1 (MQ=60)
                                       CCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTG                                                       >  SRR4302532.2509955/1‑94 (MQ=60)
                                       CCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTG                                                       <  SRR4302532.1409712/94‑1 (MQ=60)
                                        CAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGA                                                      >  SRR4302532.5653160/1‑94 (MQ=60)
                                         AATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGAT                                                     >  SRR4302532.6038053/1‑94 (MQ=60)
                                         AATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGAT                                                     <  SRR4302532.646774/94‑1 (MQ=60)
                                         AATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGAT                                                     >  SRR4302532.1670917/1‑94 (MQ=60)
                                         AATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGAT                                                     >  SRR4302532.1670915/1‑94 (MQ=60)
                                          ATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATA                                                    <  SRR4302532.712431/94‑1 (MQ=60)
                                           TTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATAC                                                   >  SRR4302532.2622918/1‑94 (MQ=60)
                                           TTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATAC                                                   >  SRR4302532.5917165/1‑94 (MQ=60)
                                           TTCTTCAACATGCACCCGCGAATATTCATTCTAGATTAGACACCCAAACGTCTAAAAAGAGGAAGCCCGACATGGCGGACAAAAAATTTGATAC                                                   >  SRR4302532.4813002/1‑94 (MQ=26)
                                            TCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACT                                                  >  SRR4302532.3128072/1‑94 (MQ=60)
                                             CTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTC                                                 >  SRR4302532.4689997/1‑94 (MQ=60)
                                             CTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTC                                                 >  SRR4302532.1838248/1‑94 (MQ=60)
                                             CTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTC                                                 >  SRR4302532.3477600/1‑94 (MQ=60)
                                              TTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCA                                                >  SRR4302532.2881947/1‑94 (MQ=60)
                                              TTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCA                                                <  SRR4302532.5495857/94‑1 (MQ=60)
                                              TTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAACAGCTTGATACTCA                                                >  SRR4302532.3309717/1‑94 (MQ=60)
                                              TTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCA                                                >  SRR4302532.1694907/1‑94 (MQ=60)
                                               TCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAA                                               >  SRR4302532.3253029/1‑94 (MQ=60)
                                                  GGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTG                                            >  SRR4302532.513462/1‑94 (MQ=60)
                                                  GGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACCCAACTG                                            <  SRR4302532.320780/94‑1 (MQ=60)
                                                   GATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGG                                           <  SRR4302532.3748954/94‑1 (MQ=60)
                                                     TGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCG                                         <  SRR4302532.375862/94‑1 (MQ=60)
                                                     TGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTG                                         >  SRR4302532.5775389/1‑94 (MQ=60)
                                                        GCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAAT                                      >  SRR4302532.3034464/1‑94 (MQ=60)
                                                         CCCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATG                                     >  SRR4302532.4407119/1‑94 (MQ=60)
                                                          CCGCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGC                                    <  SRR4302532.916631/94‑1 (MQ=60)
                                                            GCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAG                                  <  SRR4302532.4073425/94‑1 (MQ=60)
                                                            GCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAG                                  <  SRR4302532.1893744/94‑1 (MQ=60)
                                                            GCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAG                                  <  SRR4302532.1205660/94‑1 (MQ=60)
                                                            GCGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAG                                  >  SRR4302532.1924579/1‑94 (MQ=60)
                                                             CGAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGG                                 >  SRR4302532.5501744/1‑94 (MQ=60)
                                                              GAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGA                                <  SRR4302532.6333175/94‑1 (MQ=60)
                                                              GAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAACCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGA                                <  SRR4302532.2896714/94‑1 (MQ=60)
                                                              GAATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGA                                >  SRR4302532.131992/1‑94 (MQ=60)
                                                               AATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGAC                               <  SRR4302532.4629036/94‑1 (MQ=60)
                                                               AATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGAC                               <  SRR4302532.1619215/94‑1 (MQ=60)
                                                               AATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGTAGGAC                               <  SRR4302532.6172290/94‑1 (MQ=60)
                                                               AATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGAC                               <  SRR4302532.3520191/94‑1 (MQ=60)
                                                               AATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGAC                               <  SRR4302532.1217213/94‑1 (MQ=60)
                                                               AATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGAC                               <  SRR4302532.1261274/94‑1 (MQ=60)
                                                               AATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGAC                               <  SRR4302532.6172291/94‑1 (MQ=60)
                                                                ATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACG                              >  SRR4302532.4449712/1‑94 (MQ=60)
                                                                ATATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACG                              >  SRR4302532.5806156/1‑94 (MQ=60)
                                                                  ATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCA                            >  SRR4302532.2483952/1‑94 (MQ=60)
                                                                  ATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCA                            <  SRR4302532.4898376/94‑1 (MQ=60)
                                                                  ATTCATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCA                            <  SRR4302532.3300773/94‑1 (MQ=60)
                                                                   TTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAG                           <  SRR4302532.1474023/94‑1 (MQ=60)
                                                                     CATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCA                         <  SRR4302532.3883714/94‑1 (MQ=60)
                                                                     CATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCA                         <  SRR4302532.4227844/94‑1 (MQ=60)
                                                                      ATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAA                        <  SRR4302532.5161840/94‑1 (MQ=60)
                                                                      ATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAA                        >  SRR4302532.6323235/1‑94 (MQ=60)
                                                                      ATGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAAGACGCAGCAA                        >  SRR4302532.4877555/1‑94 (MQ=60)
                                                                       TGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAA                       <  SRR4302532.5158430/94‑1 (MQ=60)
                                                                       TGCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAA                       >  SRR4302532.4499925/1‑94 (MQ=60)
                                                                        GCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAA                      >  SRR4302532.3550178/1‑94 (MQ=60)
                                                                        GCTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAA                      >  SRR4302532.4011106/1‑94 (MQ=60)
                                                                         CTAGTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAA                     >  SRR4302532.3939284/1‑94 (MQ=60)
                                                                          TAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAAAA                    >  SRR4302532.4208389/1‑94 (MQ=60)
                                                                          TAGTGTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAG                    <  SRR4302532.3057909/94‑1 (MQ=60)
                                                                            GTTTAGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATA                  >  SRR4302532.514513/1‑94 (MQ=60)
                                                                               TAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAAAATACAC               <  SRR4302532.3723699/94‑1 (MQ=60)
                                                                                AGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACT              <  SRR4302532.4737049/94‑1 (MQ=60)
                                                                                AGACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACT              >  SRR4302532.463436/1‑94 (MQ=60)
                                                                                 GACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAAAATACACTC             <  SRR4302532.2928632/94‑1 (MQ=60)
                                                                                 GACATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACTC             <  SRR4302532.3419497/94‑1 (MQ=60)
                                                                                   CATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAAAATACACTCTC           >  SRR4302532.1397894/1‑94 (MQ=60)
                                                                                   CATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACTCTC           <  SRR4302532.4896429/94‑1 (MQ=60)
                                                                                   CATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACTCTC           <  SRR4302532.1306824/94‑1 (MQ=60)
                                                                                   CAACCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGGGAATGCAGGACGCAGCAAAAAATACACTCTC           <  SRR4302532.1306825/94‑1 (MQ=60)
                                                                                    ATCCAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACTCTCG          <  SRR4302532.887503/94‑1 (MQ=60)
                                                                                     TCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAAAATACACTCTCGG         <  SRR4302532.400036/94‑1 (MQ=60)
                                                                                      CCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAAAATACACTgtagtc        >  SRR4302532.3095131/1‑88 (MQ=60)
                                                                                      CCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAAAATACACTCTCGGC        <  SRR4302532.2812780/94‑1 (MQ=60)
                                                                                       CAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAAAATACACTCTCGGCG       >  SRR4302532.1042301/1‑94 (MQ=60)
                                                                                       CAGACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACTCTCGGCG       >  SRR4302532.5542763/1‑94 (MQ=60)
                                                                                         GACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACACTCGGCGCG     >  SRR4302532.853435/1‑94 (MQ=60)
                                                                                          ACGCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACTCTCGGCGCGG    <  SRR4302532.2066671/94‑1 (MQ=60)
                                                                                           CGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGCGAATGCAGGACGCAGCAAAAAATACACTCTCGGCGCGGT   >  SRR4302532.1078066/1‑94 (MQ=60)
                                                                                            GCATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACTCTCGGCGCGGTA  <  SRR4302532.6302032/94‑1 (MQ=60)
                                                                                             |                                                                                            
GTCACCAGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACATGGCGGACAAAAAGCTTGATACTCAACTGGTGAATGCAGGACGCAGCAAAAAATACACTCTCGGCGCGGTA  >  NC_000913/3150137‑3150322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑