Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGCATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACCAGCCG  >  NC_000913/3748551‑3748737
                                                                                             |                                                                                             
TGCATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCG                                                                                               <  SRR4302532.4767418/94‑1 (MQ=60)
TGCATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCA                                                                                               >  SRR4302532.307426/1‑94 (MQ=60)
TGCATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCA                                                                                               <  SRR4302532.1591187/94‑1 (MQ=60)
 GCATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAG                                                                                              >  SRR4302532.3256887/1‑94 (MQ=60)
  CATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGC                                                                                             >  SRR4302532.3284265/1‑94 (MQ=60)
   ATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGCTGCGCCATTTACGACATTCGAAGGCAAGGGATTGTTCGGCC                                                                                            >  SRR4302532.4483733/1‑94 (MQ=60)
   ATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCC                                                                                            >  SRR4302532.5035886/1‑94 (MQ=60)
   ATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCC                                                                                            >  SRR4302532.653019/1‑94 (MQ=60)
     GGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCAT                                                                                          <  SRR4302532.2515864/94‑1 (MQ=60)
     GGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCAT                                                                                          <  SRR4302532.5971810/94‑1 (MQ=60)
      GAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATA                                                                                         <  SRR4302532.3445122/94‑1 (MQ=60)
        tcagcCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAG                                                                                       <  SRR4302532.2803911/89‑1 (MQ=60)
        GCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAG                                                                                       <  SRR4302532.2803915/94‑1 (MQ=60)
        GCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAG                                                                                       <  SRR4302532.4694964/94‑1 (MQ=60)
         ctgtcaGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGGTCAATTTACGACATATGAAGGCACGGCATTGTTCGGCCATAAGA                                                                                      <  SRR4302532.6196765/88‑1 (MQ=60)
          AGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGAT                                                                                     <  SRR4302532.547089/94‑1 (MQ=60)
          AGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGAT                                                                                     <  SRR4302532.1591828/94‑1 (MQ=60)
          AGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGAT                                                                                     >  SRR4302532.1139863/1‑94 (MQ=60)
          AGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGAT                                                                                     <  SRR4302532.155796/94‑1 (MQ=60)
          AGGCCGACAACGTCGAGTCACTACATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAAGGATTGTTCGGCCATAAGAT                                                                                     >  SRR4302532.3686982/1‑94 (MQ=60)
           GGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATC                                                                                    <  SRR4302532.5056661/94‑1 (MQ=60)
             CCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCT                                                                                  <  SRR4302532.1150254/94‑1 (MQ=60)
             CCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCT                                                                                  <  SRR4302532.4791177/94‑1 (MQ=60)
              CGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTG                                                                                 <  SRR4302532.5381539/94‑1 (MQ=60)
              CGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTG                                                                                 <  SRR4302532.4686758/94‑1 (MQ=60)
              CGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTG                                                                                 <  SRR4302532.684208/94‑1 (MQ=60)
               GACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGA                                                                                >  SRR4302532.443186/1‑94 (MQ=60)
                ACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGAT                                                                               <  SRR4302532.5793945/94‑1 (MQ=60)
                 CAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATT                                                                              >  SRR4302532.2375152/1‑94 (MQ=60)
                 CAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATT                                                                              >  SRR4302532.3349700/1‑94 (MQ=60)
                  AACGCCGAGTCACTGCATAGCCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTC                                                                             <  SRR4302532.3338053/94‑1 (MQ=60)
                   ACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCA                                                                            <  SRR4302532.47362/94‑1 (MQ=60)
                    CGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAG                                                                           <  SRR4302532.4026930/94‑1 (MQ=60)
                    CGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAG                                                                           <  SRR4302532.1722297/94‑1 (MQ=60)
                    CGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAG                                                                           >  SRR4302532.116900/1‑94 (MQ=60)
                     GTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGA                                                                          <  SRR4302532.6204467/94‑1 (MQ=60)
                      TCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGAC                                                                         <  SRR4302532.1075112/94‑1 (MQ=60)
                      TCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGAC                                                                         <  SRR4302532.3213084/94‑1 (MQ=60)
                       CGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACG                                                                        <  SRR4302532.1899829/94‑1 (MQ=60)
                       CGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACG                                                                        >  SRR4302532.4063619/1‑94 (MQ=60)
                          GTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCA                                                                     >  SRR4302532.2406336/1‑94 (MQ=60)
                          GTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCA                                                                     <  SRR4302532.3137163/94‑1 (MQ=60)
                           TCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAG                                                                    >  SRR4302532.3658244/1‑94 (MQ=60)
                            CACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGG                                                                   <  SRR4302532.4850990/94‑1 (MQ=60)
                             ACTGCATAACCTGTTGCTGCCCGCCTATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGT                                                                  >  SRR4302532.1742136/1‑94 (MQ=60)
                             ACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGT                                                                  >  SRR4302532.4275272/1‑94 (MQ=60)
                             ACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGT                                                                  >  SRR4302532.991492/1‑94 (MQ=60)
                              CTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTT                                                                 >  SRR4302532.801315/1‑94 (MQ=60)
                               TGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTC                                                                >  SRR4302532.1842240/1‑94 (MQ=60)
                               TGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTC                                                                >  SRR4302532.3926975/1‑94 (MQ=60)
                                 CATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCC                                                              >  SRR4302532.3757734/1‑94 (MQ=60)
                                 CATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCC                                                              >  SRR4302532.1089603/1‑94 (MQ=60)
                                 CATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCC                                                              <  SRR4302532.5362912/94‑1 (MQ=60)
                                 CATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCC                                                              <  SRR4302532.1074939/94‑1 (MQ=60)
                                  ATAACCTGTTCCTGCCCGCCGATCCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCG                                                             <  SRR4302532.3651678/94‑1 (MQ=60)
                                   TAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGG                                                            <  SRR4302532.5187544/94‑1 (MQ=60)
                                   TAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGG                                                            <  SRR4302532.441554/94‑1 (MQ=60)
                                    AACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGT                                                           >  SRR4302532.869031/1‑94 (MQ=60)
                                    AACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGT                                                           >  SRR4302532.4457521/1‑94 (MQ=60)
                                     ACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTA                                                          >  SRR4302532.3944710/1‑94 (MQ=60)
                                      CCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTAT                                                         <  SRR4302532.2075452/94‑1 (MQ=60)
                                      CCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTAT                                                         <  SRR4302532.4813633/94‑1 (MQ=60)
                                      CCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGAATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTAT                                                         <  SRR4302532.5867798/94‑1 (MQ=60)
                                       CTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATG                                                        >  SRR4302532.1030154/1‑94 (MQ=60)
                                       CTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATG                                                        <  SRR4302532.254007/94‑1 (MQ=60)
                                        TGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGA                                                       >  SRR4302532.3842917/1‑94 (MQ=60)
                                         GTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAA                                                      <  SRR4302532.5332516/94‑1 (MQ=60)
                                         GTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAA                                                      <  SRR4302532.3311319/94‑1 (MQ=60)
                                          TTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAAC                                                     <  SRR4302532.5737165/94‑1 (MQ=60)
                                            GCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAG                                                   <  SRR4302532.2166096/94‑1 (MQ=60)
                                            GCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAG                                                   <  SRR4302532.471210/94‑1 (MQ=60)
                                             CTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGA                                                  <  SRR4302532.4170204/94‑1 (MQ=60)
                                             CTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGA                                                  <  SRR4302532.2569616/94‑1 (MQ=60)
                                             CTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGCATGAACAGA                                                  >  SRR4302532.4907301/1‑94 (MQ=60)
                                              CGCCCGCCGATGCGCCATTTACGACATTGGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAG                                                 <  SRR4302532.4571670/94‑1 (MQ=60)
                                                 CCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAA                                              >  SRR4302532.6344631/1‑94 (MQ=60)
                                                 CCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAA                                              <  SRR4302532.4596261/94‑1 (MQ=60)
                                                    CCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCC                                           >  SRR4302532.2896844/1‑94 (MQ=60)
                                                     CGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCA                                          <  SRR4302532.4734405/94‑1 (MQ=60)
                                                     CGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCA                                          <  SRR4302532.1745772/94‑1 (MQ=60)
                                                      GATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAG                                         >  SRR4302532.3143542/1‑94 (MQ=60)
                                                      GATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAG                                         >  SRR4302532.2877785/1‑94 (MQ=60)
                                                        GGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAG                                       <  SRR4302532.4876086/94‑1 (MQ=60)
                                                         acgctaattacggctTTTGAAGGCAAGGGATTGTTCGGCCATAAGAACCTGATTCAGGCGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGC                                      <  SRR4302532.4989444/79‑1 (MQ=60)
                                                          CGCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCA                                     >  SRR4302532.2756780/1‑94 (MQ=60)
                                                           GCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAC                                    >  SRR4302532.1384914/1‑94 (MQ=60)
                                                           GCCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAA                                    >  SRR4302532.1737727/1‑94 (MQ=60)
                                                           GCCATTCACGACATTTGAAGCCAAGGGATTGTCCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAA                                    <  SRR4302532.557587/94‑1 (MQ=60)
                                                            CCATTTACGACATTTGAAGGCAAGGGATTGTTCGGTCATAAGATCCTGATTCAGAGGCCAGGTTCCCGGTATGAAGAGAGCAATCCAGAGaaaa                                   >  SRR4302532.1563893/1‑90 (MQ=60)
                                                            CCATTTACGACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAAC                                   >  SRR4302532.632711/1‑94 (MQ=60)
                                                             CATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACA                                  >  SRR4302532.2143431/1‑94 (MQ=60)
                                                               TTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAAC                                <  SRR4302532.6222894/94‑1 (MQ=60)
                                                                   CGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTT                            <  SRR4302532.2323817/94‑1 (MQ=60)
                                                                    GACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACGTTTG                           >  SRR4302532.602928/1‑94 (MQ=60)
                                                                     ACATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGT                          >  SRR4302532.4830482/1‑94 (MQ=60)
                                                                     ACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGT                          >  SRR4302532.1390711/1‑94 (MQ=60)
                                                                      CATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTG                         >  SRR4302532.1663986/1‑94 (MQ=60)
                                                                      CATTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTG                         <  SRR4302532.4576689/94‑1 (MQ=60)
                                                                      CATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTG                         >  SRR4302532.2942836/1‑94 (MQ=60)
                                                                      CATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTG                         <  SRR4302532.4692152/94‑1 (MQ=60)
                                                                       ATTTGAGGGCAAGGGTTTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACACCCTTTGTGG                        <  SRR4302532.6107521/94‑1 (MQ=60)
                                                                        TTTGAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGC                       <  SRR4302532.6239421/94‑1 (MQ=60)
                                                                         TTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCA                      <  SRR4302532.4965379/94‑1 (MQ=60)
                                                                          TGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCAT                     <  SRR4302532.3063538/94‑1 (MQ=60)
                                                                           GAAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATT                    >  SRR4302532.3779586/1‑94 (MQ=60)
                                                                            AAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTA                   <  SRR4302532.5361756/94‑1 (MQ=60)
                                                                            AAGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTA                   <  SRR4302532.3868079/94‑1 (MQ=60)
                                                                            AAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTA                   <  SRR4302532.1870138/94‑1 (MQ=60)
                                                                            AAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTA                   >  SRR4302532.3274300/1‑94 (MQ=60)
                                                                             AGGCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTAC                  <  SRR4302532.4986760/94‑1 (MQ=60)
                                                                               GCAAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGA                >  SRR4302532.5885202/1‑94 (MQ=60)
                                                                                 AAGTGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACG              <  SRR4302532.6323304/94‑1 (MQ=60)
                                                                                 AAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACG              >  SRR4302532.812223/1‑94 (MQ=60)
                                                                                 AAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACG              >  SRR4302532.955869/1‑94 (MQ=60)
                                                                                 AAGGGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACG              >  SRR4302532.4049343/1‑94 (MQ=60)
                                                                                 AAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACG              >  SRR4302532.4551219/1‑94 (MQ=60)
                                                                                 AAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACG              >  SRR4302532.4309145/1‑94 (MQ=60)
                                                                                  AGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGG             >  SRR4302532.571562/1‑94 (MQ=60)
                                                                                    GGATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAG           >  SRR4302532.1503006/1‑94 (MQ=60)
                                                                                    GGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAG           <  SRR4302532.2492159/94‑1 (MQ=60)
                                                                                      ATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGTAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCA         <  SRR4302532.3347177/94‑1 (MQ=60)
                                                                                      ATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCA         >  SRR4302532.3329225/1‑94 (MQ=60)
                                                                                      ATTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCA         <  SRR4302532.2518234/94‑1 (MQ=60)
                                                                                      ATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCA         <  SRR4302532.4959053/94‑1 (MQ=60)
                                                                                      ATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCA         >  SRR4302532.4208052/1‑94 (MQ=60)
                                                                                       TTGTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCAC        >  SRR4302532.6067959/1‑94 (MQ=60)
                                                                                       TTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCAC        >  SRR4302532.680994/1‑94 (MQ=60)
                                                                                       TTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCAC        <  SRR4302532.3779678/94‑1 (MQ=60)
                                                                                        TGTTCGGCCATAAGATCCTGATTCAGACGCCAGGGTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACC       >  SRR4302532.4548687/1‑94 (MQ=60)
                                                                                         GTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACCA      <  SRR4302532.6058199/94‑1 (MQ=60)
                                                                                         GTTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACCA      >  SRR4302532.351090/1‑94 (MQ=60)
                                                                                          TTCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACCAG     <  SRR4302532.1350833/94‑1 (MQ=60)
                                                                                           TCGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACCAGC    >  SRR4302532.3395528/1‑94 (MQ=60)
                                                                                            CGGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACCAGCC   <  SRR4302532.5492356/94‑1 (MQ=60)
                                                                                            CAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACCAGCC   <  SRR4302532.3527404/94‑1 (MQ=60)
                                                                                             GGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACCAGCCG  <  SRR4302532.5802867/94‑1 (MQ=60)
                                                                                             |                                                                                             
TGCATGGAGCAGGCCGACAACGTCGAGTCACTGCATAACCTGTTGCTGCCCGCCGATGCGCCATTTACGACATTTGAAGGCAAGGGATTGTTCAGCCATAAGATCCTGATTCAGACGCCAGGTTCCCGGTATGAACAGAGCAATCCAGAGCAACAACCTTTGTGGCATTACGACGGAGCACCAGCCG  >  NC_000913/3748551‑3748737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑