Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTT  >  NC_000913/4001524‑4001709
                                                                                             |                                                                                            
CAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGG                                                                                              >  SRR4302532.3655020/1‑94 (MQ=60)
CAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGA                                                                                              <  SRR4302532.4112098/94‑1 (MQ=60)
 AGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGC                                                                                             >  SRR4302532.2412722/1‑94 (MQ=60)
 AGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGAC                                                                                             <  SRR4302532.3052876/94‑1 (MQ=60)
  GTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACG                                                                                            <  SRR4302532.6207737/94‑1 (MQ=60)
     GCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCA                                                                                         >  SRR4302532.1449589/1‑94 (MQ=60)
        AGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAAT                                                                                      >  SRR4302532.1829395/1‑94 (MQ=60)
        AGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAAT                                                                                      <  SRR4302532.2119210/94‑1 (MQ=60)
        AGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAAT                                                                                      <  SRR4302532.1783173/94‑1 (MQ=60)
        AGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAAT                                                                                      >  SRR4302532.3953467/1‑94 (MQ=60)
         GTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATG                                                                                     <  SRR4302532.3258630/94‑1 (MQ=60)
         GTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATG                                                                                     <  SRR4302532.473181/94‑1 (MQ=60)
          TTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGC                                                                                    <  SRR4302532.2501757/94‑1 (MQ=60)
            GCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTC                                                                                  >  SRR4302532.1492830/1‑94 (MQ=60)
            GCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTC                                                                                  >  SRR4302532.5570290/1‑94 (MQ=60)
             CCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCA                                                                                 >  SRR4302532.5704526/1‑94 (MQ=60)
              CACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCAT                                                                                <  SRR4302532.5137192/94‑1 (MQ=60)
               CCCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATC                                                                               <  SRR4302532.3813981/94‑1 (MQ=60)
               ACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATC                                                                               <  SRR4302532.3406091/94‑1 (MQ=60)
               ACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATC                                                                               <  SRR4302532.3406092/94‑1 (MQ=60)
               ACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATC                                                                               <  SRR4302532.2826476/94‑1 (MQ=60)
                CCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCA                                                                              <  SRR4302532.3775389/94‑1 (MQ=60)
                CCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCA                                                                              <  SRR4302532.779875/94‑1 (MQ=60)
                 CAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAG                                                                             >  SRR4302532.1017811/1‑94 (MQ=60)
                 CAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAG                                                                             >  SRR4302532.6084187/1‑94 (MQ=60)
                 CAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAG                                                                             >  SRR4302532.5753069/1‑94 (MQ=60)
                 CAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAG                                                                             <  SRR4302532.2055729/94‑1 (MQ=60)
                 CAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAG                                                                             <  SRR4302532.2865341/94‑1 (MQ=60)
                  AATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGC                                                                            <  SRR4302532.969256/94‑1 (MQ=60)
                   ATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCA                                                                           <  SRR4302532.2770389/94‑1 (MQ=60)
                     CAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACC                                                                         <  SRR4302532.5213968/94‑1 (MQ=60)
                     CAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACC                                                                         <  SRR4302532.5763807/94‑1 (MQ=60)
                     CAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACC                                                                         >  SRR4302532.1519717/1‑94 (MQ=60)
                       GCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCAC                                                                       <  SRR4302532.879345/94‑1 (MQ=60)
                        CACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACC                                                                      <  SRR4302532.5053584/94‑1 (MQ=60)
                             CAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAA                                                                 <  SRR4302532.5795151/94‑1 (MQ=60)
                              AGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACAATAAAG                                                                >  SRR4302532.2810634/1‑94 (MQ=60)
                              AGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAG                                                                >  SRR4302532.5811660/1‑94 (MQ=60)
                              AGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTCAATCAGCGTTTTTAAATAGGACCACTGGCGGGAAATGCTCATCAGCACCACCATAACG                                                                >  SRR4302532.2780018/1‑94 (MQ=60)
                               GAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGA                                                               >  SRR4302532.1151488/1‑94 (MQ=60)
                               GAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGA                                                               <  SRR4302532.6008159/94‑1 (MQ=60)
                               GAGACTGCCAGCATAAAAATGTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGCCGGCAAATGCTCATCAGCACCACCATAAAGA                                                               <  SRR4302532.6008160/94‑1 (MQ=60)
                                AGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAA                                                              >  SRR4302532.6130652/1‑94 (MQ=60)
                                AGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGACCCACCTTAAAGAA                                                              >  SRR4302532.4568204/1‑94 (MQ=60)
                                 GACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAA                                                             >  SRR4302532.5576355/1‑94 (MQ=60)
                                   CTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAA                                                           >  SRR4302532.1847985/1‑94 (MQ=60)
                                   CTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAA                                                           <  SRR4302532.4974621/94‑1 (MQ=60)
                                   CTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAA                                                           >  SRR4302532.2185957/1‑94 (MQ=60)
                                    TGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAAC                                                          <  SRR4302532.5336735/94‑1 (MQ=60)
                                    TGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAAC                                                          <  SRR4302532.5485610/94‑1 (MQ=60)
                                     GCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACG                                                         <  SRR4302532.2168287/94‑1 (MQ=60)
                                     GCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACG                                                         <  SRR4302532.2168048/94‑1 (MQ=60)
                                     GCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACG                                                         <  SRR4302532.562877/94‑1 (MQ=60)
                                       CAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGAC                                                       <  SRR4302532.1250346/94‑1 (MQ=60)
                                         GCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCA                                                     >  SRR4302532.6355487/1‑94 (MQ=60)
                                          CATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAG                                                    <  SRR4302532.2846748/94‑1 (MQ=60)
                                           ATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGA                                                   >  SRR4302532.4168506/1‑94 (MQ=60)
                                            TAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGAT                                                  <  SRR4302532.5306071/94‑1 (MQ=60)
                                               AAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCAC                                               <  SRR4302532.6268580/94‑1 (MQ=60)
                                                AATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACG                                              <  SRR4302532.3924938/94‑1 (MQ=60)
                                                AATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACG                                              <  SRR4302532.2372152/94‑1 (MQ=60)
                                                AATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACG                                              <  SRR4302532.2372153/94‑1 (MQ=60)
                                                 ATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGC                                             >  SRR4302532.3846194/1‑94 (MQ=60)
                                                 ATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGC                                             <  SRR4302532.2082818/94‑1 (MQ=60)
                                                 ATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGC                                             >  SRR4302532.2712094/1‑94 (MQ=60)
                                                 ATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGC                                             <  SRR4302532.4723633/94‑1 (MQ=60)
                                                  TTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCG                                            >  SRR4302532.5624519/1‑94 (MQ=60)
                                                    TTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGAT                                          <  SRR4302532.374058/94‑1 (MQ=60)
                                                    TTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGAT                                          >  SRR4302532.1668317/1‑94 (MQ=60)
                                                     TCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATG                                         <  SRR4302532.3148476/94‑1 (MQ=60)
                                                      CTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGC                                        >  SRR4302532.3020844/1‑94 (MQ=60)
                                                      CTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGAGATGC                                        >  SRR4302532.185160/1‑94 (MQ=60)
                                                       TGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCG                                       >  SRR4302532.5932116/1‑94 (MQ=60)
                                                         GGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTC                                     <  SRR4302532.373185/94‑1 (MQ=60)
                                                            CGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGG                                  >  SRR4302532.6130171/1‑94 (MQ=60)
                                                            CGTCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGG                                  >  SRR4302532.6130172/1‑94 (MQ=60)
                                                              TCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGAT                                >  SRR4302532.4968361/1‑94 (MQ=60)
                                                              TCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGAT                                <  SRR4302532.2394388/94‑1 (MQ=60)
                                                              TCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGAT                                <  SRR4302532.3509687/94‑1 (MQ=60)
                                                              TCTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGAT                                <  SRR4302532.427168/94‑1 (MQ=60)
                                                               CTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATT                               >  SRR4302532.5115002/1‑94 (MQ=60)
                                                               CTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATT                               >  SRR4302532.3471754/1‑94 (MQ=60)
                                                               CTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATT                               >  SRR4302532.254231/1‑94 (MQ=60)
                                                               CTGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATT                               >  SRR4302532.254230/1‑94 (MQ=60)
                                                                TGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTT                              >  SRR4302532.5260074/1‑94 (MQ=60)
                                                                TGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTT                              >  SRR4302532.6304963/1‑94 (MQ=60)
                                                                TGAATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTT                              >  SRR4302532.2907066/1‑94 (MQ=60)
                                                                  AATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCA                            <  SRR4302532.5911682/94‑1 (MQ=60)
                                                                   ATCAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCAT                           >  SRR4302532.2875989/1‑94 (MQ=60)
                                                                     CAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCG                         >  SRR4302532.2756177/1‑94 (MQ=60)
                                                                     CAGCGTTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCG                         <  SRR4302532.5800543/94‑1 (MQ=60)
                                                                         GTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGG                     >  SRR4302532.6059157/1‑94 (MQ=60)
                                                                          TTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGG                    >  SRR4302532.4984510/1‑94 (MQ=60)
                                                                          TTTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGG                    <  SRR4302532.6215069/94‑1 (MQ=60)
                                                                           TTTTAAATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGC                   <  SRR4302532.4488159/94‑1 (MQ=60)
                                                                           TTTTAAAAAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGC                   >  SRR4302532.6184253/1‑94 (MQ=60)
                                                                            TTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGgc                  >  SRR4302532.3826724/1‑92 (MQ=60)
                                                                             TTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCAC                 >  SRR4302532.178656/1‑94 (MQ=60)
                                                                               AAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGT               >  SRR4302532.384705/1‑94 (MQ=60)
                                                                                AATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTA              >  SRR4302532.3941444/1‑94 (MQ=60)
                                                                                 ATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATGGGCGGGCACGGAG             >  SRR4302532.2538765/1‑94 (MQ=60)
                                                                                 ATAGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAG             <  SRR4302532.1397410/94‑1 (MQ=60)
                                                                                   AGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTA           <  SRR4302532.6015312/94‑1 (MQ=60)
                                                                                   AGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTA           <  SRR4302532.2142545/94‑1 (MQ=60)
                                                                                   AGGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTA           <  SRR4302532.782316/94‑1 (MQ=60)
                                                                                    GGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAA          >  SRR4302532.4727012/1‑94 (MQ=60)
                                                                                    GGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAA          <  SRR4302532.2158244/94‑1 (MQ=60)
                                                                                    GGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAA          >  SRR4302532.4179188/1‑94 (MQ=60)
                                                                                    GGACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAA          >  SRR4302532.831676/1‑94 (MQ=60)
                                                                                      ACCACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAAT        <  SRR4302532.5070306/94‑1 (MQ=60)
                                                                                      ACCACTGACGGCAAATGCTCATAAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAAT        <  SRR4302532.6088155/94‑1 (MQ=60)
                                                                                        CACTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCA      >  SRR4302532.4386495/1‑94 (MQ=60)
                                                                                          CTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAAACAAC    >  SRR4302532.5198792/1‑94 (MQ=60)
                                                                                          CTGACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAAC    <  SRR4302532.5098200/94‑1 (MQ=60)
                                                                                            GGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGgacgaaatcaaact  >  SRR4302532.1688827/1‑80 (MQ=60)
                                                                                            GACGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTT  <  SRR4302532.1324004/94‑1 (MQ=60)
                                                                                             |                                                                                            
CAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTCTGTGGCGTCTGAATCAGCGTTTTTAAATAGGACCACTGGCGGCAAATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTT  >  NC_000913/4001524‑4001709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑