Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGG  >  NC_000913/4005614‑4005797
                                                                                           |                                                                                            
GGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTT                                                                                            >  SRR4302532.1438492/1‑94 (MQ=60)
   TGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCT                                                                                         <  SRR4302532.2262776/94‑1 (MQ=60)
   TGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCT                                                                                         <  SRR4302532.5506236/94‑1 (MQ=60)
    GGGTTTCCAGATGCTACGTGGTGCACAGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTG                                                                                        <  SRR4302532.4566237/94‑1 (MQ=60)
    GGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTG                                                                                        >  SRR4302532.3623046/1‑94 (MQ=60)
     GGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGA                                                                                       <  SRR4302532.903162/94‑1 (MQ=60)
     GGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGA                                                                                       >  SRR4302532.1404507/1‑94 (MQ=60)
      GTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAA                                                                                      >  SRR4302532.1606058/1‑94 (MQ=60)
      GTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAA                                                                                      >  SRR4302532.5961459/1‑94 (MQ=60)
      GTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAA                                                                                      <  SRR4302532.5993433/94‑1 (MQ=60)
       TTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGTAAAGTGGGCGCAGTTTCCTGAAA                                                                                     >  SRR4302532.3611814/1‑94 (MQ=60)
        TACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAACAGTGGGCGCAGTTTCCTGAAAG                                                                                    >  SRR4302532.6005677/1‑94 (MQ=60)
        TACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAG                                                                                    >  SRR4302532.6005678/1‑94 (MQ=60)
        TACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAG                                                                                    >  SRR4302532.1638039/1‑94 (MQ=60)
        TACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAG                                                                                    <  SRR4302532.5186544/94‑1 (MQ=60)
        TACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAG                                                                                    <  SRR4302532.2605272/94‑1 (MQ=60)
          CCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGT                                                                                  <  SRR4302532.3525295/94‑1 (MQ=60)
          CCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGT                                                                                  <  SRR4302532.3523403/94‑1 (MQ=60)
           CAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTT                                                                                 <  SRR4302532.4692031/94‑1 (MQ=60)
            AGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTT                                                                                >  SRR4302532.3246250/1‑94 (MQ=60)
            AGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTT                                                                                <  SRR4302532.3860687/94‑1 (MQ=60)
             GATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTA                                                                               <  SRR4302532.1018177/94‑1 (MQ=60)
              ATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTAC                                                                              <  SRR4302532.3955566/94‑1 (MQ=60)
              ATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTAC                                                                              <  SRR4302532.3597477/94‑1 (MQ=60)
               TGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACT                                                                             >  SRR4302532.52562/1‑94 (MQ=60)
               TGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACT                                                                             >  SRR4302532.5746536/1‑94 (MQ=60)
                GCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTG                                                                            <  SRR4302532.5844573/94‑1 (MQ=60)
                GCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTG                                                                            <  SRR4302532.6348741/94‑1 (MQ=60)
                    CGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCA                                                                        <  SRR4302532.1757449/94‑1 (MQ=60)
                     GTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAA                                                                       >  SRR4302532.2826934/1‑94 (MQ=60)
                      TGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAAT                                                                      <  SRR4302532.5357906/94‑1 (MQ=60)
                      TGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAAT                                                                      <  SRR4302532.5357905/94‑1 (MQ=60)
                      TGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAAT                                                                      >  SRR4302532.3567453/1‑94 (MQ=60)
                      TGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAAT                                                                      >  SRR4302532.1185552/1‑94 (MQ=60)
                        GTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCT                                                                    <  SRR4302532.5124736/94‑1 (MQ=60)
                         TGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTC                                                                   <  SRR4302532.2048303/94‑1 (MQ=60)
                             CTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTA                                                               >  SRR4302532.2790624/1‑94 (MQ=60)
                              TGAAAAAAGAGGCGGTTTCTGCACCTGCGCGACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAA                                                              >  SRR4302532.4019282/1‑94 (MQ=60)
                              TGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAA                                                              >  SRR4302532.5025020/1‑94 (MQ=60)
                               GAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACCGACCAATCTCGCTAAT                                                             <  SRR4302532.4052487/94‑1 (MQ=60)
                               GAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAAT                                                             <  SRR4302532.5511093/94‑1 (MQ=60)
                               GAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAAT                                                             <  SRR4302532.711551/94‑1 (MQ=60)
                                 AAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCC                                                           <  SRR4302532.560563/94‑1 (MQ=60)
                                 AAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCC                                                           <  SRR4302532.3996278/94‑1 (MQ=60)
                                  AAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCG                                                          <  SRR4302532.2809403/94‑1 (MQ=60)
                                  AAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCACTCTCGCTAATCCA                                                          >  SRR4302532.2255417/1‑94 (MQ=60)
                                  AAAAGAGGCGGTTTCTGCACCTGCGCCACAGGGCGAGCTGGCGAAAAGTGGGCGCAGCTTCATGTAAGGGTTACTGACCAATCTCGCTGATCCG                                                          >  SRR4302532.5582698/1‑94 (MQ=60)
                                    AAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAA                                                        <  SRR4302532.2484138/94‑1 (MQ=60)
                                    AAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAA                                                        <  SRR4302532.5126567/94‑1 (MQ=60)
                                     AGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAA                                                       >  SRR4302532.2693057/1‑94 (MQ=60)
                                      GAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAG                                                      <  SRR4302532.1738692/94‑1 (MQ=60)
                                      GAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAG                                                      <  SRR4302532.5071646/94‑1 (MQ=60)
                                      GAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAG                                                      <  SRR4302532.3677538/94‑1 (MQ=60)
                                       AGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGC                                                     >  SRR4302532.189891/1‑94 (MQ=60)
                                       AGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGC                                                     >  SRR4302532.503592/1‑94 (MQ=60)
                                       AGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGC                                                     >  SRR4302532.503590/1‑94 (MQ=60)
                                        GGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCG                                                    >  SRR4302532.4506931/1‑94 (MQ=60)
                                          CGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGAT                                                  <  SRR4302532.6191634/94‑1 (MQ=60)
                                             TTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTAT                                               <  SRR4302532.183428/94‑1 (MQ=60)
                                             TTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTAT                                               <  SRR4302532.194706/94‑1 (MQ=60)
                                              TTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATC                                              >  SRR4302532.844060/1‑94 (MQ=60)
                                              TTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATC                                              >  SRR4302532.5011286/1‑94 (MQ=60)
                                               TCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCT                                             <  SRR4302532.6134237/94‑1 (MQ=60)
                                               TCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCT                                             <  SRR4302532.4796398/94‑1 (MQ=60)
                                               TCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCT                                             <  SRR4302532.4170744/94‑1 (MQ=60)
                                                  GCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACT                                          >  SRR4302532.3585775/1‑94 (MQ=60)
                                                  GCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACT                                          >  SRR4302532.1693913/1‑94 (MQ=60)
                                                   CACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTT                                         >  SRR4302532.362773/1‑94 (MQ=60)
                                                   CACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGAGCAATCTCGCGAATCCGAAAGCGATTATCTACTT                                         >  SRR4302532.3620117/1‑94 (MQ=60)
                                                   CACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTT                                         >  SRR4302532.3400230/1‑94 (MQ=60)
                                                    ACCTGCGCCACAGGTCGAGCTGGCGAACAGTTGGGGCAGTTTCATGAAAGGTTaagtgcccatcttcgctaatccggaagcgataagctacttg                                        >  SRR4302532.1220934/1‑53 (MQ=35)
                                                    ACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTT                                        >  SRR4302532.196101/1‑94 (MQ=60)
                                                    ACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTT                                        <  SRR4302532.2488120/94‑1 (MQ=60)
                                                    ACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTT                                        <  SRR4302532.5756576/94‑1 (MQ=60)
                                                    ACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTT                                        <  SRR4302532.214155/94‑1 (MQ=60)
                                                    ACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTT                                        >  SRR4302532.2598393/1‑94 (MQ=60)
                                                    ACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTT                                        <  SRR4302532.2872010/94‑1 (MQ=60)
                                                    ACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTT                                        >  SRR4302532.6193846/1‑94 (MQ=60)
                                                     CCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTG                                       <  SRR4302532.4894725/94‑1 (MQ=60)
                                                     CCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTG                                       <  SRR4302532.1882758/94‑1 (MQ=60)
                                                      CTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGG                                      >  SRR4302532.1704525/1‑94 (MQ=60)
                                                      CTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGG                                      >  SRR4302532.5286957/1‑94 (MQ=60)
                                                         CGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTC                                   <  SRR4302532.3289491/94‑1 (MQ=60)
                                                          GCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCG                                  >  SRR4302532.750023/1‑94 (MQ=60)
                                                            CACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGT                                <  SRR4302532.631316/94‑1 (MQ=60)
                                                             ACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTG                               <  SRR4302532.1159344/94‑1 (MQ=60)
                                                             ACAGGTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTG                               >  SRR4302532.4018095/1‑94 (MQ=60)
                                                               AGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTT                             >  SRR4302532.2974079/1‑94 (MQ=60)
                                                                 GTCGAGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCT                           <  SRR4302532.1279751/94‑1 (MQ=60)
                                                                   CGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCA                         >  SRR4302532.4162061/1‑94 (MQ=60)
                                                                     AGCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATT                       <  SRR4302532.1954373/94‑1 (MQ=60)
                                                                      GCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTG                      <  SRR4302532.5302350/94‑1 (MQ=60)
                                                                      GCTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACCTTGGCTCGGTGTTCTCATTG                      <  SRR4302532.599604/94‑1 (MQ=60)
                                                                       CTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTTATTGT                     >  SRR4302532.4917823/1‑94 (MQ=60)
                                                                       CTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGT                     >  SRR4302532.3770724/1‑94 (MQ=60)
                                                                       CTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGT                     >  SRR4302532.3770725/1‑94 (MQ=60)
                                                                       CTGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGT                     >  SRR4302532.5752935/1‑94 (MQ=60)
                                                                        TGGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTT                    <  SRR4302532.983639/94‑1 (MQ=60)
                                                                         GGCGAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTT                   <  SRR4302532.569408/94‑1 (MQ=60)
                                                                           CGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTATTCTCATTGTTTGT                 >  SRR4302532.3538951/1‑94 (MQ=60)
                                                                            GAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTC                <  SRR4302532.3451236/94‑1 (MQ=60)
                                                                            GAAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTC                <  SRR4302532.425409/94‑1 (MQ=60)
                                                                             AAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAAACCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCG               <  SRR4302532.3865580/94‑1 (MQ=60)
                                                                             AAAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCG               <  SRR4302532.5719370/94‑1 (MQ=60)
                                                                              AAAGTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGG              <  SRR4302532.3564647/94‑1 (MQ=60)
                                                                              AAAGGGGGCGCAGCTTCCTGAAAGGGTTACTGACCAATCTCGCTAATCCGACAGCTATTATCTACTTTGGCTTGGTGTTCTTATTGTTTGTCGG              >  SRR4302532.3497981/1‑94 (MQ=60)
                                                                                 GTGGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGA           >  SRR4302532.4768505/1‑94 (MQ=60)
                                                                                  TGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGAT          >  SRR4302532.4705605/1‑94 (MQ=60)
                                                                                   GGGCGCAGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATA         <  SRR4302532.2188899/94‑1 (MQ=60)
                                                                                      CGCATCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACG      <  SRR4302532.6171644/94‑1 (MQ=60)
                                                                                      CGCAGCTTCCTGAAAGCTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACG      <  SRR4302532.30355/94‑1 (MQ=60)
                                                                                         AGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTG   >  SRR4302532.3939369/1‑94 (MQ=60)
                                                                                         AGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGA‑TATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGG  <  SRR4302532.4009288/94‑1 (MQ=60)
                                                                                         AGCTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTG   <  SRR4302532.1541725/94‑1 (MQ=60)
                                                                                          GTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGG  <  SRR4302532.2144561/94‑1 (MQ=60)
                                                                                           |                                                                                            
GGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGG  >  NC_000913/4005614‑4005797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑