Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTGGTAATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTG  >  NC_000913/4059958‑4060144
                                                                                             |                                                                                             
ATTGGTAATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCG                                                                                               <  SRR4302532.3403671/94‑1 (MQ=60)
   GGTAATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGT                                                                                            >  SRR4302532.297439/1‑94 (MQ=60)
    GTAATGCTATGTCGGTAAACTCATTTGTCACTACAGTGGGGTTTTTTCTGTCTATTTATGTTGCCGATAAACTACCGCGCAGATAAACCATGTC                                                                                           >  SRR4302532.1385929/1‑94 (MQ=60)
    GTAATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTC                                                                                           <  SRR4302532.3151636/94‑1 (MQ=60)
    GTAATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTC                                                                                           >  SRR4302532.1452809/1‑94 (MQ=60)
     TAATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCA                                                                                          >  SRR4302532.2999698/1‑94 (MQ=60)
      AATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCAT                                                                                         <  SRR4302532.2857969/94‑1 (MQ=60)
       ATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATT                                                                                        <  SRR4302532.2864107/94‑1 (MQ=60)
       ATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATT                                                                                        >  SRR4302532.1118684/1‑94 (MQ=60)
        TGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTC                                                                                       >  SRR4302532.4369317/1‑94 (MQ=60)
         GCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCT                                                                                      <  SRR4302532.6048205/94‑1 (MQ=60)
          CTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTC                                                                                     <  SRR4302532.5102986/94‑1 (MQ=60)
           TATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCA                                                                                    >  SRR4302532.5696512/1‑94 (MQ=60)
            ATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCAC                                                                                   >  SRR4302532.4959077/1‑94 (MQ=60)
            ATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCAC                                                                                   <  SRR4302532.2415745/94‑1 (MQ=60)
            ATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCAC                                                                                   >  SRR4302532.1653500/1‑94 (MQ=60)
             TGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACT                                                                                  <  SRR4302532.5008906/94‑1 (MQ=60)
                CGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCAT                                                                               >  SRR4302532.1720599/1‑94 (MQ=60)
                 GGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATT                                                                              >  SRR4302532.5939350/1‑94 (MQ=60)
                  GTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTG                                                                             >  SRR4302532.5546182/1‑94 (MQ=60)
                   TAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGC                                                                            <  SRR4302532.390397/94‑1 (MQ=60)
                    AAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCG                                                                           <  SRR4302532.4366078/94‑1 (MQ=60)
                     AACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGA                                                                          <  SRR4302532.5138312/94‑1 (MQ=60)
                      ACTCATTTGTCACCACCGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGAC                                                                         <  SRR4302532.2410043/94‑1 (MQ=60)
                      ACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGAC                                                                         <  SRR4302532.470771/94‑1 (MQ=60)
                      ACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGAC                                                                         <  SRR4302532.2120066/94‑1 (MQ=60)
                      ACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGAC                                                                         <  SRR4302532.2410041/94‑1 (MQ=60)
                      ACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGAC                                                                         <  SRR4302532.1926632/94‑1 (MQ=60)
                         CATTTGTCACCACAGTGTGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGG                                                                      <  SRR4302532.1283299/94‑1 (MQ=60)
                         CATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGG                                                                      <  SRR4302532.2916878/94‑1 (MQ=60)
                         CATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGG                                                                      <  SRR4302532.6088864/94‑1 (MQ=60)
                          ATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGA                                                                     >  SRR4302532.4757558/1‑94 (MQ=60)
                          ATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGA                                                                     >  SRR4302532.1353175/1‑94 (MQ=60)
                          ATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGA                                                                     <  SRR4302532.1771822/94‑1 (MQ=60)
                          ATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGA                                                                     <  SRR4302532.3994237/94‑1 (MQ=60)
                           TTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGAT                                                                    >  SRR4302532.2885040/1‑94 (MQ=60)
                            TTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGTCAGGATT                                                                   <  SRR4302532.6259861/94‑1 (MQ=60)
                            TTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATT                                                                   >  SRR4302532.6148788/1‑94 (MQ=60)
                              GTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTAC                                                                 <  SRR4302532.3844405/94‑1 (MQ=60)
                              GTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTAC                                                                 >  SRR4302532.727643/1‑94 (MQ=60)
                              GTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATCGCGACAGGATTAC                                                                 >  SRR4302532.4312241/1‑94 (MQ=60)
                               TCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACT                                                                <  SRR4302532.3672075/94‑1 (MQ=60)
                               TCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACT                                                                <  SRR4302532.2606414/94‑1 (MQ=60)
                                CACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTG                                                               <  SRR4302532.938900/94‑1 (MQ=60)
                                CACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTG                                                               >  SRR4302532.2262188/1‑94 (MQ=60)
                                 ACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGG                                                              <  SRR4302532.578525/94‑1 (MQ=60)
                                 ACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGG                                                              >  SRR4302532.5632056/1‑94 (MQ=60)
                                   CACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGT                                                            >  SRR4302532.2976536/1‑94 (MQ=60)
                                     CAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGT                                                          >  SRR4302532.476241/1‑94 (MQ=60)
                                      AGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTT                                                         <  SRR4302532.3504227/94‑1 (MQ=60)
                                       GTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTT                                                        >  SRR4302532.3555664/1‑94 (MQ=60)
                                       GTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTT                                                        <  SRR4302532.2059831/94‑1 (MQ=60)
                                       GTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTT                                                        >  SRR4302532.3333201/1‑94 (MQ=60)
                                       GTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTT                                                        >  SRR4302532.3874627/1‑94 (MQ=60)
                                       GTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTT                                                        <  SRR4302532.1589469/94‑1 (MQ=60)
                                        TGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTA                                                       <  SRR4302532.153163/94‑1 (MQ=60)
                                        TGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTA                                                       <  SRR4302532.4279367/94‑1 (MQ=60)
                                          GGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATT                                                     >  SRR4302532.3502092/1‑94 (MQ=60)
                                          GGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATT                                                     >  SRR4302532.5863603/1‑94 (MQ=60)
                                           TCTTTTTTCTATCTATTTATTTTGCCGATAAACTATCGCGCATGTACACCGTTTCATTCTCCCGCATTGCGACAGGATTACTGTGTGTTTATTT                                                    <  SRR4302532.2429089/94‑1 (MQ=50)
                                            CTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTG                                                   >  SRR4302532.2571320/1‑94 (MQ=60)
                                            CTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTG                                                   >  SRR4302532.386845/1‑94 (MQ=60)
                                              TTTTTCTTGCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGAC                                                 <  SRR4302532.972776/94‑1 (MQ=60)
                                              TTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGAC                                                 <  SRR4302532.1898466/94‑1 (MQ=60)
                                              TTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGAC                                                 >  SRR4302532.1672696/1‑94 (MQ=60)
                                              TTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGAC                                                 <  SRR4302532.5160318/94‑1 (MQ=60)
                                              TTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGAC                                                 <  SRR4302532.2501338/94‑1 (MQ=60)
                                               ttccgatcttcgggATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACG                                                <  SRR4302532.4712979/80‑1 (MQ=60)
                                               TTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACG                                                >  SRR4302532.4494438/1‑94 (MQ=60)
                                                TTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGA                                               <  SRR4302532.617539/94‑1 (MQ=60)
                                                 TTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGAC                                              <  SRR4302532.3088501/94‑1 (MQ=60)
                                                  TCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACA                                             <  SRR4302532.5340127/94‑1 (MQ=60)
                                                  TCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACA                                             <  SRR4302532.5340128/94‑1 (MQ=60)
                                                   CTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAA                                            <  SRR4302532.3643724/94‑1 (MQ=60)
                                                    TGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAAT                                           >  SRR4302532.2619254/1‑94 (MQ=60)
                                                    TGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAAT                                           <  SRR4302532.215874/94‑1 (MQ=60)
                                                    TGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAAT                                           >  SRR4302532.1819287/1‑94 (MQ=60)
                                                    TGTCTATTTATTTTGCCGACAAACTACCGCGCAGATCCACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAAT                                           <  SRR4302532.1587567/94‑1 (MQ=60)
                                                       CTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCC                                        <  SRR4302532.4456552/94‑1 (MQ=60)
                                                       CTATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCC                                        <  SRR4302532.5804867/94‑1 (MQ=60)
                                                       CTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCC                                        >  SRR4302532.1990228/1‑94 (MQ=60)
                                                       CTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCC                                        >  SRR4302532.1418218/1‑94 (MQ=60)
                                                        TATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCG                                       >  SRR4302532.5455133/1‑94 (MQ=60)
                                                        TATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGGTTATTTGACGACAATGCCG                                       >  SRR4302532.551048/1‑94 (MQ=60)
                                                        TATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCG                                       <  SRR4302532.4504795/94‑1 (MQ=60)
                                                         ATTTATTTTGCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGG                                      <  SRR4302532.4783595/94‑1 (MQ=60)
                                                         ATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGG                                      >  SRR4302532.3879398/1‑94 (MQ=60)
                                                           TTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGG                                    <  SRR4302532.4652104/94‑1 (MQ=60)
                                                            TATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGT                                   >  SRR4302532.3909369/1‑94 (MQ=60)
                                                               TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATT                                >  SRR4302532.5315996/1‑94 (MQ=60)
                                                                  GCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGG                             <  SRR4302532.6210393/94‑1 (MQ=60)
                                                                  GCCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGG                             <  SRR4302532.1036798/94‑1 (MQ=60)
                                                                  GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGG                             <  SRR4302532.4791770/94‑1 (MQ=60)
                                                                   CCGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGG                            <  SRR4302532.1251403/94‑1 (MQ=60)
                                                                   CCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGG                            <  SRR4302532.6108876/94‑1 (MQ=60)
                                                                    CGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGC                           >  SRR4302532.943069/1‑94 (MQ=60)
                                                                    CGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGC                           >  SRR4302532.5136776/1‑94 (MQ=60)
                                                                    CGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGC                           >  SRR4302532.6201630/1‑94 (MQ=60)
                                                                    CGATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGC                           >  SRR4302532.5997668/1‑94 (MQ=60)
                                                                     GATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCA                          >  SRR4302532.5315120/1‑94 (MQ=60)
                                                                      ATAAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCAT                         >  SRR4302532.3956732/1‑94 (MQ=60)
                                                                        AAACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCC                       >  SRR4302532.3024424/1‑94 (MQ=60)
                                                                        AAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTGCTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCC                       <  SRR4302532.6130019/94‑1 (MQ=60)
                                                                         AACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCT                      >  SRR4302532.5284265/1‑94 (MQ=60)
                                                                          ACTACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTC                     >  SRR4302532.763921/1‑94 (MQ=60)
                                                                          ACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTC                     <  SRR4302532.733878/94‑1 (MQ=60)
                                                                           CTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCT                    >  SRR4302532.670773/1‑94 (MQ=60)
                                                                           CTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCT                    <  SRR4302532.283771/94‑1 (MQ=60)
                                                                            TACCGCTCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTT                   <  SRR4302532.5592452/94‑1 (MQ=60)
                                                                            TACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTT                   <  SRR4302532.1056932/94‑1 (MQ=60)
                                                                             ACCGCGCAGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTT                  <  SRR4302532.4088116/94‑1 (MQ=60)
                                                                              CCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTG                 <  SRR4302532.627679/94‑1 (MQ=60)
                                                                                GCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTC               <  SRR4302532.6210678/94‑1 (MQ=60)
                                                                                  GCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTG             <  SRR4302532.3659577/94‑1 (MQ=60)
                                                                                   CAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGG            >  SRR4302532.3294379/1‑94 (MQ=60)
                                                                                    AGATACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGG           >  SRR4302532.2777743/1‑94 (MQ=60)
                                                                                    AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGG           <  SRR4302532.712672/94‑1 (MQ=60)
                                                                                    AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGGATTGGGGCATCCTCTTTGTCTGGC           >  SRR4302532.3708839/1‑94 (MQ=60)
                                                                                     GATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGGATTGGGGCGTCCTCTTTGTCTGGGC          >  SRR4302532.5738833/1‑94 (MQ=60)
                                                                                      ATACACCATGTCATTCTCACTCATTGCGACAGGATTACCGGGTGTTTATTTGACGACAATGCCGGGGGATTGGGGCATCCTCTTCGTCTGGGCG         >  SRR4302532.5671558/1‑94 (MQ=60)
                                                                                        ACACCGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCT       <  SRR4302532.4873198/94‑1 (MQ=60)
                                                                                            CGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTT   >  SRR4302532.2452348/1‑94 (MQ=60)
                                                                                            CGTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTG   >  SRR4302532.5001810/1‑94 (MQ=60)
                                                                                            CATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGAGTTGGGGCATCCTCTTTGTCTGGGCGCTATTT   >  SRR4302532.6288915/1‑94 (MQ=60)
                                                                                             GTGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTG  <  SRR4302532.103865/94‑1 (MQ=60)
                                                                                             ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTG  >  SRR4302532.4268369/1‑94 (MQ=60)
                                                                                             ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTG  >  SRR4302532.5436644/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATTGGTAATGCTATGTCGGTAAACTCATTTGTCACCACAGTGGGCTTTTTTCTGTCTATTTATTTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTG  >  NC_000913/4059958‑4060144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑