Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTCGACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAGCGGAAG  >  NC_000913/4148449‑4148635
                                                                                             |                                                                                             
TTCGACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGT                                                                                               >  SRR4302532.5111697/1‑94 (MQ=60)
TTCGACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGC                                                                                               >  SRR4302532.3055723/1‑94 (MQ=60)
TTCGACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGC                                                                                               >  SRR4302532.6241588/1‑94 (MQ=60)
  CGACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAG                                                                                             <  SRR4302532.5060247/94‑1 (MQ=60)
  CGACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAG                                                                                             >  SRR4302532.4973508/1‑94 (MQ=60)
  CGACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAG                                                                                             >  SRR4302532.6321077/1‑94 (MQ=60)
   GACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGT                                                                                            <  SRR4302532.2371439/94‑1 (MQ=60)
   GACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGT                                                                                            >  SRR4302532.5822779/1‑94 (MQ=60)
     CCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGA                                                                                          >  SRR4302532.6243461/1‑94 (MQ=60)
           TTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGAC                                                                                    <  SRR4302532.5446309/94‑1 (MQ=60)
            TTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACG                                                                                   <  SRR4302532.4517727/94‑1 (MQ=60)
             TGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCCTCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGAATCGACGC                                                                                  >  SRR4302532.4465514/1‑94 (MQ=60)
             TGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGC                                                                                  >  SRR4302532.5073355/1‑94 (MQ=60)
             TGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGGTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGC                                                                                  >  SRR4302532.4293719/1‑94 (MQ=60)
              GCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCC                                                                                 <  SRR4302532.782278/94‑1 (MQ=60)
                AGCGCCGTACGTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGC                                                                               <  SRR4302532.1502368/94‑1 (MQ=60)
                  CGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCG                                                                             >  SRR4302532.1364433/1‑94 (MQ=60)
                  CGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCG                                                                             <  SRR4302532.2835314/94‑1 (MQ=60)
                   GCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGG                                                                            >  SRR4302532.2195212/1‑94 (MQ=60)
                   GCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGG                                                                            <  SRR4302532.5405319/94‑1 (MQ=60)
                     CGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTT                                                                          >  SRR4302532.2510829/1‑94 (MQ=60)
                      GTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTG                                                                         <  SRR4302532.1210293/94‑1 (MQ=60)
                      GTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTG                                                                         >  SRR4302532.3010759/1‑94 (MQ=60)
                      GTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTG                                                                         <  SRR4302532.4223366/94‑1 (MQ=60)
                      GTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTG                                                                         >  SRR4302532.2192660/1‑94 (MQ=60)
                       TACCTGGACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGGCGCCCGTTGG                                                                        >  SRR4302532.4951900/1‑94 (MQ=60)
                       TACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGG                                                                        >  SRR4302532.4048069/1‑94 (MQ=60)
                       TACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGG                                                                        <  SRR4302532.1200475/94‑1 (MQ=60)
                        ACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGG                                                                       >  SRR4302532.3569706/1‑94 (MQ=60)
                        ACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGG                                                                       <  SRR4302532.5133000/94‑1 (MQ=60)
                         CCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGC                                                                      >  SRR4302532.5354504/1‑94 (MQ=60)
                          CTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCG                                                                     >  SRR4302532.3455231/1‑94 (MQ=60)
                          CTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCG                                                                     >  SRR4302532.4681318/1‑94 (MQ=60)
                          CTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCG                                                                     >  SRR4302532.4505802/1‑94 (MQ=60)
                          CTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCG                                                                     <  SRR4302532.5008783/94‑1 (MQ=60)
                           TGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGA                                                                    >  SRR4302532.1665674/1‑94 (MQ=60)
                            GCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGAC                                                                   <  SRR4302532.6310770/94‑1 (MQ=60)
                            GCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGAC                                                                   <  SRR4302532.4123559/94‑1 (MQ=60)
                              ACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGT                                                                 >  SRR4302532.1378870/1‑94 (MQ=60)
                              ACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGT                                                                 >  SRR4302532.5133128/1‑94 (MQ=60)
                               CCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTT                                                                <  SRR4302532.1319220/94‑1 (MQ=60)
                               CCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTT                                                                <  SRR4302532.5762900/94‑1 (MQ=60)
                                CCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTT                                                               <  SRR4302532.2863998/94‑1 (MQ=60)
                                 CAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTC                                                              >  SRR4302532.3441088/1‑94 (MQ=60)
                                  CGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCG                                                             <  SRR4302532.2238013/94‑1 (MQ=60)
                                   GCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGAGTAGTGACTCGACGGCGCCGGGTGGGCGccgggtcgg                                                            >  SRR4302532.973963/1‑85 (MQ=60)
                                     CAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCG                                                          >  SRR4302532.196952/1‑94 (MQ=60)
                                      AGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGG                                                         >  SRR4302532.4465834/1‑94 (MQ=60)
                                      AGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGG                                                         >  SRR4302532.4657621/1‑94 (MQ=60)
                                      AGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGGTCGGCGACGTTTCtcccg                                                         >  SRR4302532.5332255/1‑89 (MQ=60)
                                         GGGGGAGCATCAGACGGTTTTGCGTGCAGGCGAAGATCCACGTAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACG                                                      <  SRR4302532.3165802/94‑1 (MQ=60)
                                         CGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACG                                                      <  SRR4302532.2891152/94‑1 (MQ=60)
                                         CGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACG                                                      >  SRR4302532.1381514/1‑94 (MQ=60)
                                          GGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGG                                                     >  SRR4302532.4390813/1‑94 (MQ=60)
                                           GGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTG                                                    >  SRR4302532.5993852/1‑94 (MQ=60)
                                           GGGAGCATCAGACGGTTGTGCGTCCAGGCGAAGATCCACGGAATAGCGCGTAGTGACTCGACGCCGGCGGGTGGGCGACGGTTCGCCCGACGTG                                                    >  SRR4302532.4818264/1‑94 (MQ=60)
                                               GCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACC                                                >  SRR4302532.4350637/1‑94 (MQ=60)
                                                CATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCC                                               <  SRR4302532.4057114/94‑1 (MQ=60)
                                                CATCAGACGGGTTTGCGTCCAGGCGAAGATCCACCGAATGGCGCGTGGTGACTCGACGCCGCCGGGTGGGCGACTGTTCGCCGCACGCGAACCC                                               >  SRR4302532.5722969/1‑94 (MQ=60)
                                                 ATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCA                                              >  SRR4302532.6262876/1‑94 (MQ=60)
                                                  TCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAA                                             >  SRR4302532.5576073/1‑94 (MQ=60)
                                                  TCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAA                                             >  SRR4302532.5576074/1‑94 (MQ=60)
                                                   CAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAAC                                            <  SRR4302532.3252845/94‑1 (MQ=60)
                                                   CAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAAC                                            >  SRR4302532.146508/1‑94 (MQ=60)
                                                   CAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTTGGCGACGTTTCGCCGGACGTGGACCCAAC                                            >  SRR4302532.5744067/1‑94 (MQ=60)
                                                   CAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAAC                                            <  SRR4302532.4362392/94‑1 (MQ=60)
                                                    AGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGCCGTGAACCCAACG                                           >  SRR4302532.3272086/1‑94 (MQ=60)
                                                    AGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACG                                           <  SRR4302532.1547347/94‑1 (MQ=60)
                                                     GACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGG                                          >  SRR4302532.3080746/1‑94 (MQ=60)
                                                      ACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGC                                         <  SRR4302532.5792716/94‑1 (MQ=60)
                                                       CGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCA                                        <  SRR4302532.3257256/94‑1 (MQ=60)
                                                        GGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGCCGTGAACCCAACGGCAG                                       >  SRR4302532.5088447/1‑94 (MQ=60)
                                                        GGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAG                                       <  SRR4302532.646515/94‑1 (MQ=60)
                                                        GGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAG                                       >  SRR4302532.2691287/1‑94 (MQ=60)
                                                         GTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGT                                      >  SRR4302532.2728226/1‑94 (MQ=60)
                                                         GTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGAAGCCGCCGGGTGGGCGACGTTTTGCCGGACGTGCACCCAACGGCAGT                                      >  SRR4302532.3272243/1‑94 (MQ=60)
                                                          TTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTT                                     <  SRR4302532.5755767/94‑1 (MQ=60)
                                                                GTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCA                               <  SRR4302532.3522700/94‑1 (MQ=60)
                                                                GTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTCCCCA                               >  SRR4302532.5463181/1‑94 (MQ=60)
                                                                GTCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCA                               >  SRR4302532.3556047/1‑94 (MQ=60)
                                                                GGCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCA                               <  SRR4302532.3522699/94‑1 (MQ=60)
                                                                 TCCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAG                              <  SRR4302532.1765360/94‑1 (MQ=60)
                                                                  CCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGT                             >  SRR4302532.426662/1‑94 (MQ=60)
                                                                  CCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTGTGCCCAGT                             >  SRR4302532.470301/1‑94 (MQ=60)
                                                                  CCAGGCGAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGT                             >  SRR4302532.1280576/1‑94 (MQ=60)
                                                                    AGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTC                           >  SRR4302532.1198481/1‑94 (MQ=60)
                                                                        GAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGT                       >  SRR4302532.2356341/1‑94 (MQ=60)
                                                                        GAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGT                       >  SRR4302532.378374/1‑94 (MQ=60)
                                                                        GAAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGT                       <  SRR4302532.1806892/94‑1 (MQ=60)
                                                                         AAGATCTACGGAATGGCGCTCAGTGACTCGAAGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTT                      <  SRR4302532.292615/94‑1 (MQ=60)
                                                                         AAGATCCACGGGATGGCGCGCAGTGCCGCGACGCCGCCGGTTGGGCGACGTTACGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTT                      <  SRR4302532.1923468/94‑1 (MQ=60)
                                                                         AAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTT                      <  SRR4302532.292614/94‑1 (MQ=60)
                                                                         AAGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTT                      >  SRR4302532.2707868/1‑94 (MQ=60)
                                                                          AGATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTC                     >  SRR4302532.3764546/1‑94 (MQ=60)
                                                                           GATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCC                    <  SRR4302532.230419/94‑1 (MQ=60)
                                                                           GATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGCCGTGAACCCAACGGCAGTTTGCTCAGTTCTTGTTCC                    >  SRR4302532.4727967/1‑94 (MQ=60)
                                                                           GATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCC                    <  SRR4302532.2880285/94‑1 (MQ=60)
                                                                           GATCCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCC                    <  SRR4302532.5602775/94‑1 (MQ=60)
                                                                              CCACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGC                 <  SRR4302532.4794965/94‑1 (MQ=60)
                                                                               CACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCG                <  SRR4302532.3936679/94‑1 (MQ=60)
                                                                                CCGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGT               <  SRR4302532.215623/94‑1 (MQ=60)
                                                                                ACGGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGT               >  SRR4302532.1538299/1‑94 (MQ=60)
                                                                                 CGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTA              >  SRR4302532.2203885/1‑94 (MQ=60)
                                                                                  GGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAG             >  SRR4302532.1275092/1‑94 (MQ=60)
                                                                                  GGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAG             <  SRR4302532.6297156/94‑1 (MQ=60)
                                                                                  GGAATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAG             >  SRR4302532.1839884/1‑94 (MQ=60)
                                                                                   GAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGC            <  SRR4302532.2306865/94‑1 (MQ=60)
                                                                                    AATGGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCG           <  SRR4302532.331173/94‑1 (MQ=60)
                                                                                       GGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAG        <  SRR4302532.440774/94‑1 (MQ=60)
                                                                                       GGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAG        <  SRR4302532.6078003/94‑1 (MQ=60)
                                                                                       GGCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAG        <  SRR4302532.956774/94‑1 (MQ=60)
                                                                                        GCGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAGC       <  SRR4302532.349446/94‑1 (MQ=60)
                                                                                         CGCGCAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAGCG      >  SRR4302532.5755696/1‑94 (MQ=60)
                                                                                           CGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAGCGGA    <  SRR4302532.5788662/94‑1 (MQ=60)
                                                                                           CGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAGCGGA    >  SRR4302532.4313278/1‑94 (MQ=60)
                                                                                             CAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAGCGGAAG  >  SRR4302532.2960092/1‑94 (MQ=60)
                                                                                             |                                                                                             
TTCGACCACTTTTTGCAGCGCCGTACCTGCACCCAGCCAGGCGGGGAGCATCAGACGGTTTTGCGTCCAGGCGAAGATCCACGGAATGGCGCGTAGTGACTCGACGCCGCCGGTTGGGCGACGTTTCGCCGGACGTGAACCCAACGGCAGTTTGCCCAGTTCTTGTTCCGGCGTAGCGGAGCGGAAG  >  NC_000913/4148449‑4148635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑