Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAATCCCCATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCAAAGC  >  NC_000913/4591866‑4592052
                                                                                             |                                                                                             
CAATCCCCATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAG                                                                                               >  SRR4302532.5148255/1‑94 (MQ=60)
 AATCCCCATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGT                                                                                              >  SRR4302532.5768886/1‑94 (MQ=60)
  ATCCCCATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTC                                                                                             <  SRR4302532.2455097/94‑1 (MQ=60)
  ATCCCCATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTC                                                                                             <  SRR4302532.1653250/94‑1 (MQ=60)
     CCCATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCA                                                                                          <  SRR4302532.2159434/94‑1 (MQ=60)
       CATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGA                                                                                        >  SRR4302532.2154058/1‑94 (MQ=60)
        ATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCA                                                                                       >  SRR4302532.641468/1‑94 (MQ=60)
        ATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCA                                                                                       >  SRR4302532.641463/1‑94 (MQ=60)
        ATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCA                                                                                       >  SRR4302532.274930/1‑94 (MQ=60)
        ATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCA                                                                                       >  SRR4302532.6070340/1‑94 (MQ=60)
         TGCCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCAT                                                                                      <  SRR4302532.5795032/94‑1 (MQ=60)
           CCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCA                                                                                    <  SRR4302532.2049781/94‑1 (MQ=60)
           CCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCA                                                                                    <  SRR4302532.5094831/94‑1 (MQ=60)
            CGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAG                                                                                   <  SRR4302532.674849/94‑1 (MQ=60)
            CGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAG                                                                                   >  SRR4302532.1247692/1‑94 (MQ=60)
             GATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGG                                                                                  >  SRR4302532.4402548/1‑94 (MQ=60)
             GATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGG                                                                                  <  SRR4302532.5320811/94‑1 (MQ=60)
             GATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGG                                                                                  <  SRR4302532.5320810/94‑1 (MQ=60)
              ATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGC                                                                                 >  SRR4302532.2776458/1‑94 (MQ=60)
              ATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGC                                                                                 >  SRR4302532.4047009/1‑94 (MQ=60)
               TACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCG                                                                                <  SRR4302532.4031133/94‑1 (MQ=60)
               TACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCG                                                                                >  SRR4302532.5395378/1‑94 (MQ=60)
               TACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCG                                                                                <  SRR4302532.5394866/94‑1 (MQ=60)
               TACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCG                                                                                >  SRR4302532.5938814/1‑94 (MQ=60)
                ACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGT                                                                               <  SRR4302532.5461943/94‑1 (MQ=60)
                ACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGG                                                                               >  SRR4302532.1408678/1‑94 (MQ=60)
                 CGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTG                                                                              <  SRR4302532.2658546/94‑1 (MQ=60)
                 CGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTG                                                                              >  SRR4302532.2511479/1‑94 (MQ=60)
                 CGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTG                                                                              >  SRR4302532.2511478/1‑94 (MQ=60)
                  GCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGG                                                                             >  SRR4302532.3970588/1‑94 (MQ=60)
                   CACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAAAATCCCCACTCCCAGCATCAGGCGTGGG                                                                            >  SRR4302532.4205561/1‑94 (MQ=60)
                    ACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGC                                                                           <  SRR4302532.2238392/94‑1 (MQ=60)
                     CCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGCACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCC                                                                          >  SRR4302532.2819931/1‑94 (MQ=60)
                      CAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCT                                                                         <  SRR4302532.5384981/94‑1 (MQ=60)
                      CAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCT                                                                         >  SRR4302532.2790189/1‑94 (MQ=60)
                      CAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCT                                                                         >  SRR4302532.2573763/1‑94 (MQ=60)
                       AACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTT                                                                        <  SRR4302532.1742479/94‑1 (MQ=60)
                         CACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTA                                                                      <  SRR4302532.883260/94‑1 (MQ=60)
                         CACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTA                                                                      >  SRR4302532.2737272/1‑94 (MQ=60)
                          ACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTAC                                                                     <  SRR4302532.182481/94‑1 (MQ=60)
                           CGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACG                                                                    <  SRR4302532.5980679/94‑1 (MQ=60)
                           CGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACG                                                                    <  SRR4302532.2746252/94‑1 (MQ=60)
                             AACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGAT                                                                  >  SRR4302532.2681293/1‑94 (MQ=60)
                              ACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATC                                                                 <  SRR4302532.4122561/94‑1 (MQ=60)
                              ACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATC                                                                 <  SRR4302532.1582453/94‑1 (MQ=60)
                               CTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCC                                                                >  SRR4302532.3385850/1‑94 (MQ=60)
                                  CGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCTCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAAT                                                             >  SRR4302532.1006319/1‑94 (MQ=60)
                                   GTAAAGTTGTGCACCATGCCAGACATGGCCTGGAACAGTAACCAGAAGAACACCCCCAGTCCCAGCATCAGGCGTGGGCCTTTCCGATCCAATA                                                            <  SRR4302532.5734649/94‑1 (MQ=60)
                                    TAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAG                                                           >  SRR4302532.3840076/1‑94 (MQ=60)
                                    TAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAG                                                           >  SRR4302532.2111457/1‑94 (MQ=60)
                                      AAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTG                                                         <  SRR4302532.1603654/94‑1 (MQ=60)
                                      AAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTG                                                         >  SRR4302532.1420858/1‑94 (MQ=60)
                                        GTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGG                                                       <  SRR4302532.142267/94‑1 (MQ=60)
                                        GTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGG                                                       >  SRR4302532.5926337/1‑94 (MQ=60)
                                          TGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCC                                                     <  SRR4302532.2416834/94‑1 (MQ=60)
                                            TGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGC                                                   >  SRR4302532.6058004/1‑94 (MQ=60)
                                            TGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGC                                                   >  SRR4302532.5993651/1‑94 (MQ=60)
                                            TGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATACCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGC                                                   <  SRR4302532.5276857/94‑1 (MQ=60)
                                             GCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCA                                                  <  SRR4302532.3596480/94‑1 (MQ=60)
                                             GCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCA                                                  <  SRR4302532.2159758/94‑1 (MQ=60)
                                             CCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCCCTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCA                                                  <  SRR4302532.4648541/94‑1 (MQ=60)
                                              CACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAA                                                 >  SRR4302532.4009989/1‑94 (MQ=60)
                                               ACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAG                                                >  SRR4302532.6169538/1‑94 (MQ=60)
                                                CCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGG                                               <  SRR4302532.3021335/94‑1 (MQ=60)
                                                CCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGG                                               <  SRR4302532.2787123/94‑1 (MQ=60)
                                                  ATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAA                                             <  SRR4302532.834596/94‑1 (MQ=60)
                                                    GCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGT                                           >  SRR4302532.183264/1‑94 (MQ=60)
                                                    GCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGT                                           <  SRR4302532.3076216/94‑1 (MQ=60)
                                                     CCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTT                                          >  SRR4302532.1522000/1‑94 (MQ=60)
                                                     CCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTT                                          >  SRR4302532.3013309/1‑94 (MQ=60)
                                                     CCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTT                                          >  SRR4302532.444673/1‑94 (MQ=60)
                                                       CGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGC                                        <  SRR4302532.1743832/94‑1 (MQ=60)
                                                       AGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGC                                        >  SRR4302532.873818/1‑94 (MQ=60)
                                                       AGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGC                                        >  SRR4302532.873817/1‑94 (MQ=60)
                                                       AGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGC                                        >  SRR4302532.873816/1‑94 (MQ=60)
                                                       AGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGC                                        <  SRR4302532.5265944/94‑1 (MQ=60)
                                                       AGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCACGCGTGGGCCTTTACGATCCAATAGTGGTCCGCAAGGAAGTTGC                                        >  SRR4302532.1225096/1‑94 (MQ=60)
                                                       AGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGC                                        <  SRR4302532.3805592/94‑1 (MQ=60)
                                                       AGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGC                                        >  SRR4302532.2172549/1‑94 (MQ=60)
                                                       AGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGC                                        >  SRR4302532.4477006/1‑94 (MQ=60)
                                                         ACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAATTTGCGA                                      >  SRR4302532.647008/1‑94 (MQ=60)
                                                         ACATTGCCTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGC                                      <  SRR4302532.1193061/94‑1 (MQ=60)
                                                          CATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCA                                     >  SRR4302532.2233240/1‑94 (MQ=60)
                                                            TTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAAT                                   <  SRR4302532.4008440/94‑1 (MQ=60)
                                                                CTGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCG                               >  SRR4302532.1924634/1‑94 (MQ=60)
                                                                 TGGAACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACTATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGT                              <  SRR4302532.1189443/94‑1 (MQ=60)
                                                                  GGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTA                             <  SRR4302532.1831000/94‑1 (MQ=60)
                                                                   GAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAA                            <  SRR4302532.6069511/94‑1 (MQ=60)
                                                                    AACAGTGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAG                           <  SRR4302532.1148557/94‑1 (MQ=60)
                                                                     ACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGC                          <  SRR4302532.4165488/94‑1 (MQ=60)
                                                                      CAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCG                         >  SRR4302532.6213573/1‑94 (MQ=60)
                                                                       AGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGA                        >  SRR4302532.1188798/1‑94 (MQ=60)
                                                                         TGACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGG                      >  SRR4302532.2484046/1‑94 (MQ=60)
                                                                          GACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTG                     <  SRR4302532.173470/94‑1 (MQ=60)
                                                                          GACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTG                     <  SRR4302532.173469/94‑1 (MQ=60)
                                                                           ACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGA                    >  SRR4302532.3291494/1‑94 (MQ=60)
                                                                           ACCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGA                    >  SRR4302532.377890/1‑94 (MQ=60)
                                                                            CCAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAA                   >  SRR4302532.6025943/1‑94 (MQ=60)
                                                                             CAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAA                  <  SRR4302532.3975892/94‑1 (MQ=60)
                                                                             CAGAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAA                  <  SRR4302532.4169449/94‑1 (MQ=60)
                                                                               GAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCGTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAAC                <  SRR4302532.124113/94‑1 (MQ=60)
                                                                               GAAGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCACGTAAGCGAGTGAAAAC                <  SRR4302532.465754/94‑1 (MQ=60)
                                                                                AAGAACGTCCCCCCTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACA               <  SRR4302532.6007685/94‑1 (MQ=60)
                                                                                AAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACA               >  SRR4302532.2671158/1‑94 (MQ=60)
                                                                                 AGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGAAAAAACAC              <  SRR4302532.572465/94‑1 (MQ=60)
                                                                                 AGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACAC              >  SRR4302532.4164435/1‑94 (MQ=60)
                                                                                 AGAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACAC              >  SRR4302532.341028/1‑94 (MQ=60)
                                                                                  GAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACG             <  SRR4302532.830425/94‑1 (MQ=60)
                                                                                  GAACATCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACG             >  SRR4302532.5102847/1‑94 (MQ=60)
                                                                                   AACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGG            >  SRR4302532.77331/1‑94 (MQ=60)
                                                                                    ACACCCCCAGTCCCAGCATCAGGCGTGGCCCTTTCCGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGA           <  SRR4302532.5326946/94‑1 (MQ=60)
                                                                                     CATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAG          <  SRR4302532.1886992/94‑1 (MQ=60)
                                                                                     CATCCCCAGCCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAG          <  SRR4302532.1270528/94‑1 (MQ=60)
                                                                                     CACCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAG          <  SRR4302532.39234/94‑1 (MQ=60)
                                                                                       TCCCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAAAG        <  SRR4302532.4503930/94‑1 (MQ=60)
                                                                                        CCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGC       >  SRR4302532.2134222/1‑94 (MQ=60)
                                                                                        CCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGC       >  SRR4302532.1686271/1‑94 (MQ=60)
                                                                                         CCCACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCA      <  SRR4302532.5431835/94‑1 (MQ=60)
                                                                                          CCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCAA     <  SRR4302532.3408788/94‑1 (MQ=60)
                                                                                           CACTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCAAA    <  SRR4302532.5387052/94‑1 (MQ=60)
                                                                                            AGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCAAAG   <  SRR4302532.5173998/94‑1 (MQ=60)
                                                                                             GTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGGGCAAAGG  >  SRR4302532.1681855/1‑94 (MQ=60)
                                                                                             GTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCAAAGC  >  SRR4302532.3934992/1‑94 (MQ=60)
                                                                                             GTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCAAAGC  >  SRR4302532.5040869/1‑94 (MQ=60)
                                                                                             GTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCAAAGC  >  SRR4302532.1681853/1‑94 (MQ=60)
                                                                                             CTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCAAAGC  >  SRR4302532.4418745/1‑94 (MQ=60)
                                                                                             |                                                                                             
CAATCCCCATACCGATACGCACCAACACGAACTGCGTAAAGTTGTGCACCATGCCAGACATTGCCTGGAACAGTGACCAGAAGAACATCCCCAGTCCCAGCATCAGGCGTGGGCCTTTACGATCCAATAGTGGGCCGCAAGGAAGTTGCGCAATCCCGTAAGCGAGTGAAAACACGGAGAGCAAAGC  >  NC_000913/4591866‑4592052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑