Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,710,827 |
T→C |
V12A (GTC→GCC) |
ydgR → |
putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,710,827 | 0 | T | C | 83.1%
| 436.2
/ 83.2
| 183 | V12A (GTC→GCC) | ydgR | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base T (19/12); new base C (78/74); total (97/86) |
| Fisher's exact test for biased strand distribution p-value = 3.31e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.78e-01 |
Only 100 of 188 total aligned reads displayed.
ATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGA > NC_000913/1710737‑1710918
|
ataCATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCa > 1:5595546/1‑93 (MQ=255)
aTAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGttt > 1:3026522/1‑93 (MQ=255)
tAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTg < 2:4362433/93‑1 (MQ=255)
aCGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGaa < 2:2556363/93‑1 (MQ=255)
aCGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGaa < 1:2731471/93‑1 (MQ=255)
gcgAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACg > 2:6083106/1‑93 (MQ=255)
gcgAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACg > 2:1951510/1‑93 (MQ=255)
cgAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGc > 2:1104986/1‑93 (MQ=255)
gagaAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCt > 1:6352133/1‑93 (MQ=255)
agaAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCtt < 1:869794/93‑1 (MQ=255)
agaAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCtt > 2:3068055/1‑93 (MQ=255)
gaAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCttt > 2:1591090/1‑93 (MQ=255)
aaaGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTc > 1:4401967/1‑93 (MQ=255)
aGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCaa > 1:3373690/1‑93 (MQ=255)
aGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCaa < 1:4369072/93‑1 (MQ=255)
gCACCCCCGTTAATATGGTATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCaaa < 1:3101622/93‑1 (MQ=255)
gCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCaaa < 1:3916125/93‑1 (MQ=255)
aCCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAaaca < 2:5053333/93‑1 (MQ=255)
aCCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAaaca < 2:354481/93‑1 (MQ=255)
cccccGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAaacaa < 1:2413163/93‑1 (MQ=255)
cccGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAAcc > 2:3414470/1‑93 (MQ=255)
ccGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCg > 2:1290052/1‑93 (MQ=255)
cGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGa < 2:6244768/93‑1 (MQ=255)
cGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGa > 1:6275843/1‑93 (MQ=255)
gTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGaa < 2:1247206/93‑1 (MQ=255)
gTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGaa < 1:3099429/93‑1 (MQ=255)
gTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGaa < 1:3919163/93‑1 (MQ=255)
ttAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAg > 1:3554918/1‑93 (MQ=255)
ttAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAg > 2:2805809/1‑93 (MQ=255)
ttAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAg > 1:2953670/1‑93 (MQ=255)
ttAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAg < 2:3529152/93‑1 (MQ=255)
aaTATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGc < 2:3185791/93‑1 (MQ=255)
tatGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGt > 2:4886736/1‑93 (MQ=255)
atGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAATCCAACTGAAAGCGCCAGTTTGAACGCTTTAAAACAACCGAAGGCGtt < 2:3173711/93‑1 (MQ=255)
atGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGtt > 1:5123425/1‑93 (MQ=255)
atGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGtt > 2:1044814/1‑93 (MQ=255)
tGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTc > 1:350628/1‑93 (MQ=255)
tGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTc > 2:5484170/1‑93 (MQ=255)
gggATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCt > 1:1117097/1‑93 (MQ=255)
ggATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTa > 2:4805979/1‑93 (MQ=255)
aTGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTAtc > 2:1506140/1‑93 (MQ=255)
tAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCa < 2:2287689/93‑1 (MQ=255)
tAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCa > 2:5633909/1‑93 (MQ=255)
tAAAAAAAGAGGTAAAAGTGCCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCa < 1:4869637/93‑1 (MQ=255)
gaaaaaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCa < 1:6194531/92‑1 (MQ=255)
aaaaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAtc < 2:4981063/93‑1 (MQ=255)
aaaaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAtc > 1:3308344/1‑93 (MQ=255)
aaaaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAtc > 2:5367930/1‑93 (MQ=255)
aaaaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAtc > 1:1877842/1‑93 (MQ=255)
aaaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAtct < 2:2403261/93‑1 (MQ=255)
aaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAtcttc > 2:3769909/1‑93 (MQ=255)
aaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAtcttc > 2:5878687/1‑93 (MQ=255)
aaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAtcttct > 1:2818662/1‑93 (MQ=255)
gagGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCg > 2:421463/1‑93 (MQ=255)
agGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGa < 1:1926560/93‑1 (MQ=255)
ggTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGAt < 1:505875/93‑1 (MQ=255)
tAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTg > 1:1595/1‑93 (MQ=255)
aaaaGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGa < 2:6501562/93‑1 (MQ=255)
aaaaGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGATTTCAAACAACCTAAGGCGTTCTATCTCATCTTCTCGATTgt > 2:3118486/1‑92 (MQ=255)
aaaGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAg < 1:6627978/93‑1 (MQ=255)
aaGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGt < 2:837514/93‑1 (MQ=255)
aaGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGt > 1:1656707/1‑93 (MQ=255)
aGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGtt < 1:6202277/93‑1 (MQ=255)
gtgtCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTa > 2:4066699/1‑93 (MQ=255)
gtgtCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTa < 2:4671989/93‑1 (MQ=255)
gtgtCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTa < 2:4132028/93‑1 (MQ=255)
tgtCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTAt > 1:5926136/1‑93 (MQ=255)
gtCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATg > 2:3336479/1‑93 (MQ=255)
gtCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATg > 2:2156480/1‑93 (MQ=255)
tCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATgg > 1:1761106/1‑93 (MQ=255)
tCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATgg < 2:3668625/93‑1 (MQ=255)
tCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATgg > 1:4837010/1‑93 (MQ=255)
ccACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATggg > 2:2562221/1‑93 (MQ=255)
cACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGa > 1:1973200/1‑93 (MQ=255)
aCTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGaa > 2:5592612/1‑93 (MQ=255)
aCTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGGTCTATCTCATCTTCTCGATTGAGTTATGGGaa < 1:649306/93‑1 (MQ=255)
cTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAAc > 2:744078/1‑93 (MQ=255)
cTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAAc < 1:1294919/93‑1 (MQ=255)
gCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGt < 2:1551303/93‑1 (MQ=255)
cAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGtt < 2:1682500/93‑1 (MQ=255)
accaaaaaccaaCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTg < 2:2916165/93‑1 (MQ=255)
caaaatccaaCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCGCATCTTCTCGATTGAGTTATGGGAACGTTTTGGt < 2:1321632/93‑1 (MQ=255)
aaaaccaaCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGtta > 1:2362605/1‑93 (MQ=255)
aaaccaaCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTTGttat < 1:4327572/93‑1 (MQ=255)
aaccaaCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGttatt < 1:4722616/93‑1 (MQ=255)
ccaaCTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTAc > 1:5469797/1‑93 (MQ=255)
ccaaCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTAc > 1:4507882/1‑93 (MQ=255)
ccaaCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTAc < 2:5738241/93‑1 (MQ=255)
caaCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACg < 1:4070797/93‑1 (MQ=255)
aaCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTActg > 1:3639631/1‑91 (MQ=255)
aCTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGc > 1:1046957/1‑93 (MQ=255)
aGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACaa > 2:2124201/1‑93 (MQ=255)
aGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACaa > 2:5773183/1‑93 (MQ=255)
aGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACaa > 1:5292760/1‑93 (MQ=255)
gcgcCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAg < 1:3224941/93‑1 (MQ=255)
gcgcCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAg > 1:3847449/1‑93 (MQ=255)
gcgcCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAg > 2:3653539/1‑93 (MQ=255)
gcgcCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAg < 1:1000118/93‑1 (MQ=255)
cGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAgg < 2:4027723/93‑1 (MQ=255)
gTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGa > 2:5451489/1‑93 (MQ=255)
|
ATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGA > NC_000913/1710737‑1710918
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGA > NC_000913/1710736‑1710918
|
TATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCA > SRR4302547.5710981/1‑94 (MQ=60)
TACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGT > SRR4302547.377927/1‑94 (MQ=60)
ACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTT > SRR4302547.6422999/1‑94 (MQ=60)
CATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTT > SRR4302547.3086701/1‑94 (MQ=60)
TAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGA > SRR4302547.1171487/1‑94 (MQ=60)
AACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAA < SRR4302547.1390480/94‑1 (MQ=60)
ACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAAC < SRR4302547.2786297/94‑1 (MQ=60)
CGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCT > SRR4302547.6484507/1‑94 (MQ=60)
GAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTT > SRR4302547.5706735/1‑94 (MQ=60)
AGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTT < SRR4302547.886459/94‑1 (MQ=60)
GAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTC > SRR4302547.4492618/1‑94 (MQ=60)
AAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAA > SRR4302547.3442224/1‑94 (MQ=60)
AGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAA < SRR4302547.6623515/94‑1 (MQ=60)
AGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAA < SRR4302547.4458829/94‑1 (MQ=60)
GCACCCCCGTTAATATGGTATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAAC < SRR4302547.3163045/94‑1 (MQ=60)
GCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAAC < SRR4302547.3995752/94‑1 (MQ=60)
CACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACA < SRR4302547.5550984/94‑1 (MQ=60)
CCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAAC > SRR4302547.4664884/1‑94 (MQ=60)
CCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAAC > SRR4302547.2432566/1‑94 (MQ=60)
CCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAAC < SRR4302547.2462022/94‑1 (MQ=60)
CCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAAC > SRR4302547.5228298/1‑94 (MQ=60)
CCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACC < SRR4302547.685488/94‑1 (MQ=60)
CCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACC < SRR4302547.1743380/94‑1 (MQ=60)
CCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGA > SRR4302547.2846951/1‑94 (MQ=60)
CCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGA > SRR4302547.6406225/1‑94 (MQ=60)
GTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAG > SRR4302547.3627464/1‑94 (MQ=60)
GTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAG < SRR4302547.3998852/94‑1 (MQ=60)
GTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAG > SRR4302547.3012466/1‑94 (MQ=60)
GTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAG < SRR4302547.3160828/94‑1 (MQ=60)
TAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGC > SRR4302547.1634967/1‑94 (MQ=60)
ATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGT > SRR4302547.1885904/1‑94 (MQ=60)
TATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTT > SRR4302547.5228993/1‑94 (MQ=60)
ATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTC > SRR4302547.357138/1‑94 (MQ=60)
TGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCT > SRR4302547.1139593/1‑94 (MQ=60)
GATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATC < SRR4302547.3201513/94‑1 (MQ=60)
ATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCT > SRR4302547.3999810/1‑94 (MQ=60)
TAAAAAAAGAGGTAAAAGTGCCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAT < SRR4302547.4970549/94‑1 (MQ=60)
GAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAT < SRR4302547.6323118/94‑1 (MQ=60)
AAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATC > SRR4302547.3375051/1‑94 (MQ=60)
AAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATC > SRR4302547.1914943/1‑94 (MQ=60)
AAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCT < SRR4302547.3379808/94‑1 (MQ=60)
AAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCT > SRR4302547.2875047/1‑94 (MQ=60)
AAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCT > SRR4302547.6261148/1‑94 (MQ=60)
AGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGAT > SRR4302547.3357038/1‑94 (MQ=60)
AGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGAT < SRR4302547.1964732/94‑1 (MQ=60)
GGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATT < SRR4302547.515063/94‑1 (MQ=60)
GGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATT < SRR4302547.6376177/94‑1 (MQ=60)
GTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTG > SRR4302547.1619/1‑94 (MQ=60)
TAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGA < SRR4302547.937297/94‑1 (MQ=60)
TAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGATCTATCTCATCTTCTCGATTGG > SRR4302547.3623504/1‑94 (MQ=60)
AAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGT < SRR4302547.6765950/94‑1 (MQ=60)
AAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGT > SRR4302547.1689384/1‑94 (MQ=60)
AAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTT > SRR4302547.194424/1‑94 (MQ=60)
AAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTT < SRR4302547.4923348/94‑1 (MQ=60)
AAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTT < SRR4302547.3082578/94‑1 (MQ=60)
AAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTT < SRR4302547.3477677/94‑1 (MQ=60)
AGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTA < SRR4302547.6331049/94‑1 (MQ=60)
GTGTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTAT > SRR4302547.6048990/1‑94 (MQ=60)
GTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGG > SRR4302547.4937277/1‑94 (MQ=60)
GTCCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGG > SRR4302547.1796023/1‑94 (MQ=60)
CCACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGA > SRR4302547.2012373/1‑94 (MQ=60)
CACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAA > SRR4302547.4556489/1‑94 (MQ=60)
ACTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGGTCTATCTCATCTTCTCGATTGAGTTATGGGAAC < SRR4302547.661272/94‑1 (MQ=60)
CTGCAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACG < SRR4302547.1320987/94‑1 (MQ=60)
CAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGGACGTTT > SRR4302547.2119572/1‑94 (MQ=60)
CAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTT < SRR4302547.4432219/94‑1 (MQ=60)
CAAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTT > SRR4302547.2878119/1‑94 (MQ=60)
AAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTT < SRR4302547.5838180/94‑1 (MQ=60)
AAACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTT < SRR4302547.4475857/94‑1 (MQ=60)
AACCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTG > SRR4302547.5036166/1‑94 (MQ=60)
CCAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGT < SRR4302547.2622008/94‑1 (MQ=60)
CAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTT < SRR4302547.3712395/94‑1 (MQ=60)
CAAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCTTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTT < SRR4302547.5270756/94‑1 (MQ=60)
AAAAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTA > SRR4302547.2410502/1‑94 (MQ=60)
AAACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTTGTTATT < SRR4302547.4416638/94‑1 (MQ=60)
AACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTA < SRR4302547.4820405/94‑1 (MQ=60)
ACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTAC > SRR4302547.5582796/1‑94 (MQ=60)
ACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTAC > SRR4302547.4601005/1‑94 (MQ=60)
ACCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTAC < SRR4302547.110681/94‑1 (MQ=60)
CCAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACG > SRR4302547.3939396/1‑94 (MQ=60)
CAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGG < SRR4302547.6679286/94‑1 (MQ=60)
CAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACTG > SRR4302547.3713862/1‑94 (MQ=60)
CAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGG < SRR4302547.4153494/94‑1 (MQ=60)
CAACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGG > SRR4302547.3154117/1‑94 (MQ=60)
AACTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGC > SRR4302547.1067662/1‑94 (MQ=60)
CTGAAAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCT > SRR4302547.4278877/1‑94 (MQ=60)
AAGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAA > SRR4302547.5401951/1‑94 (MQ=60)
AGCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAG > SRR4302547.3925778/1‑94 (MQ=60)
GCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGG < SRR4302547.1019616/94‑1 (MQ=60)
GCGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGG < SRR4302547.3289297/94‑1 (MQ=60)
CGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGA > SRR4302547.561795/1‑94 (MQ=60)
CGCCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGA < SRR4302547.4477136/94‑1 (MQ=60)
|
TATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGA > NC_000913/1710736‑1710918
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
