Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,051,650 |
A→G |
intergenic (‑300/‑15) |
b1980 ← / → shiA |
hypothetical protein/putative transport protein, shikimate |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,051,650 | 0 | A | G | 83.1%
| 507.0
/ 93.2
| 207 | intergenic (‑300/‑15) | b1980/shiA | hypothetical protein/putative transport protein, shikimate |
| Reads supporting (aligned to +/- strand): ref base A (22/13); new base G (92/80); total (114/93) |
| Fisher's exact test for biased strand distribution p-value = 3.54e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01 |
Only 100 of 209 total aligned reads displayed.
AGATGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAG > NC_000913/2051558‑2051740
|
aTGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCa > 1:4058108/1‑93 (MQ=255)
aTGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACa < 1:1924617/93‑1 (MQ=255)
tGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCaa < 2:225018/93‑1 (MQ=255)
gcgcTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCaaa > 2:6319208/1‑93 (MQ=255)
gcTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACa < 2:3360650/93‑1 (MQ=255)
gcTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACa < 1:5609112/93‑1 (MQ=255)
ctctGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAg > 2:2151000/1‑93 (MQ=255)
ctctGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAg < 2:2066295/93‑1 (MQ=255)
tctGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAgg < 1:6347441/93‑1 (MQ=255)
tctGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAga > 2:2417413/1‑92 (MQ=255)
ctGTCGAGGGAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCACACTAATTATAAAAAGACAGTGCAAACAGGa < 2:3734245/93‑1 (MQ=255)
ctGTAGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGACAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGa < 2:3452632/93‑1 (MQ=255)
gTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAATCAGGATc < 1:2262810/93‑1 (MQ=255)
tCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCa < 2:2992467/93‑1 (MQ=255)
tCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCa > 1:4355712/1‑93 (MQ=255)
cGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCAt < 1:4725531/93‑1 (MQ=255)
gAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCAtt > 2:4251014/1‑93 (MQ=255)
gAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCAtt < 2:6565391/93‑1 (MQ=255)
aGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTa > 2:2595079/1‑93 (MQ=255)
aGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTa > 2:2799733/1‑93 (MQ=255)
aGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTa > 1:6610515/1‑93 (MQ=255)
ggTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTAt > 2:3844577/1‑93 (MQ=255)
ggTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTAt < 1:2353850/93‑1 (MQ=255)
gTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATg > 2:6055204/1‑93 (MQ=255)
tAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATgg < 2:4487370/93‑1 (MQ=255)
gTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGAc > 2:6171567/1‑93 (MQ=255)
tctcATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACt > 1:4943219/1‑93 (MQ=255)
tctcATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACt > 2:2529962/1‑93 (MQ=255)
tctcATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACt > 2:1517602/1‑93 (MQ=255)
tcATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTcc > 1:5809995/1‑93 (MQ=255)
tcATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTcc < 2:1135514/93‑1 (MQ=255)
tcATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTcc > 2:642686/1‑93 (MQ=255)
aTAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCAc > 1:1067661/1‑93 (MQ=255)
tAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACg > 2:4582735/1‑93 (MQ=255)
ggTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTc < 2:5869723/93‑1 (MQ=255)
ggTTCGTTTATAGATCGACGGCAATGGGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTc > 1:2084059/1‑93 (MQ=255)
gTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCa < 2:4187427/93‑1 (MQ=255)
tttATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTcc < 2:2682153/93‑1 (MQ=255)
ttATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCa < 1:1015189/93‑1 (MQ=255)
ataGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACt > 1:2570682/1‑93 (MQ=255)
aTCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTc > 1:2595118/1‑93 (MQ=255)
tCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTcc > 2:1860719/1‑93 (MQ=255)
cGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTccc < 1:1955640/93‑1 (MQ=255)
aCGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGa < 2:6283572/93‑1 (MQ=255)
aCGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGa < 1:6466120/93‑1 (MQ=255)
cGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGAt > 1:1062939/1‑93 (MQ=255)
ggCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATg > 1:1282450/1‑93 (MQ=255)
ggCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATg < 1:3583626/93‑1 (MQ=255)
gCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGa > 2:3282194/1‑93 (MQ=255)
cAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGaa < 1:1806346/93‑1 (MQ=255)
aaTGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAg < 1:734546/93‑1 (MQ=255)
aaTGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCAACGCTCATCTCCACTCGTCCCGATGAAg > 1:3956991/1‑93 (MQ=255)
tgtgAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCATACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAgcg > 2:3952516/1‑91 (MQ=255)
tgtgAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAggg > 2:1337577/1‑93 (MQ=255)
tgtgAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAggg > 1:4919539/1‑93 (MQ=255)
gtgAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGa < 2:760138/93‑1 (MQ=255)
gtgAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGa > 1:5504803/1‑93 (MQ=255)
gtgAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGa < 1:6266780/93‑1 (MQ=255)
gAGTTACCTTTTCCATACTAATTATAAAAAGGCAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACg > 2:1441476/1‑93 (MQ=255)
gTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCt > 1:1427203/1‑93 (MQ=255)
ttACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCtt > 1:1661881/1‑93 (MQ=255)
ttACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCtt < 1:251452/93‑1 (MQ=255)
aCCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTc > 2:3153999/1‑93 (MQ=255)
ccTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCg > 2:1394038/1‑93 (MQ=255)
cTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGt > 2:2947318/1‑93 (MQ=255)
cTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGt > 1:3383457/1‑93 (MQ=255)
tttCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTa < 1:3355138/93‑1 (MQ=255)
ccATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGt > 2:3634789/1‑93 (MQ=255)
ccATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGt < 1:3269919/93‑1 (MQ=255)
ccATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGt > 1:2159106/1‑93 (MQ=255)
cATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTc > 1:2793534/1‑93 (MQ=255)
cATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTc > 2:824843/1‑93 (MQ=255)
cATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTc < 1:2897660/93‑1 (MQ=255)
aTACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTcg < 1:1779122/93‑1 (MQ=255)
tACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTcgc > 2:489034/1‑93 (MQ=255)
aCTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTcgcg > 1:1521316/1‑93 (MQ=255)
cTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCgcgc > 1:5318236/1‑93 (MQ=255)
aaTTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGccc < 2:744325/93‑1 (MQ=255)
aaTTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGccc < 2:4454480/93‑1 (MQ=255)
aTTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCCCTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcg < 1:5674631/93‑1 (MQ=255)
ttATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcga > 1:3082045/1‑93 (MQ=255)
ttATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcga < 2:4110023/93‑1 (MQ=255)
tataAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcgac > 1:4023176/1‑93 (MQ=255)
tataAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcgac > 1:3181292/1‑93 (MQ=255)
ataAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcgacg > 2:1479134/1‑93 (MQ=255)
ataAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcgacg > 1:5255017/1‑93 (MQ=255)
ataAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcgacg > 2:6239198/1‑93 (MQ=255)
aaaaaGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAg < 1:4429187/93‑1 (MQ=255)
aaaaaGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAg < 1:6136062/93‑1 (MQ=255)
aaaaGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGTGc < 1:4226571/93‑1 (MQ=255)
aaaaGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGc > 1:614750/1‑93 (MQ=255)
aaaGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCt < 1:1337577/93‑1 (MQ=255)
aaaGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCt > 1:3985972/1‑93 (MQ=255)
aaaGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCt > 1:4782489/1‑93 (MQ=255)
aaaGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCt < 2:2178178/93‑1 (MQ=255)
aaaGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCt < 1:3818168/93‑1 (MQ=255)
aaaGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCt < 1:4647933/93‑1 (MQ=255)
aCAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTGAGTCGCGCCCGACGAGCTGCGt > 2:6445784/1‑93 (MQ=255)
aGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTa < 2:167109/93‑1 (MQ=255)
gTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAg > 2:3893568/1‑93 (MQ=255)
|
AGATGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAG > NC_000913/2051558‑2051740
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGATGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCA > NC_000913/2051557‑2051743
|
CAGATGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTA < SRR4302547.1392658/94‑1 (MQ=60)
GATGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCGATACTAATTATAAAAAGACAGTACA > SRR4302547.4534427/1‑94 (MQ=60)
GATGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCA > SRR4302547.4140518/1‑94 (MQ=60)
ATGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAA < SRR4302547.1962745/94‑1 (MQ=60)
GCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAG < SRR4302547.5832624/94‑1 (MQ=60)
GCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAG < SRR4302547.5724855/94‑1 (MQ=60)
CTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGG > SRR4302547.2047441/1‑94 (MQ=60)
TCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGA < SRR4302547.6479679/94‑1 (MQ=60)
CTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGAT > SRR4302547.2715011/1‑94 (MQ=60)
TGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATC < SRR4302547.573265/94‑1 (MQ=60)
GTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAATCAGGATCA < SRR4302547.2308536/94‑1 (MQ=60)
GTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCA > SRR4302547.4445184/1‑94 (MQ=60)
TCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCAT < SRR4302547.234569/94‑1 (MQ=60)
CGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATT < SRR4302547.4823432/94‑1 (MQ=60)
GAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTA < SRR4302547.1061354/94‑1 (MQ=60)
GAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTA > SRR4302547.6748111/1‑94 (MQ=60)
GGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATG < SRR4302547.2401551/94‑1 (MQ=60)
GGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATG > SRR4302547.4063602/1‑94 (MQ=60)
GTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGG < SRR4302547.3301759/94‑1 (MQ=60)
GTAGTCTCATAAGGTTCGGTTATAGATCGACGGCCATGAGAGTTACCTTTTCCCTACTAATTATAAAAAGACAGTACAAACACGATCACTATGG > SRR4302547.606636/1‑94 (MQ=60)
GTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACT > SRR4302547.5045594/1‑94 (MQ=60)
TCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTC < SRR4302547.2218807/94‑1 (MQ=60)
TCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTC > SRR4302547.2044370/1‑94 (MQ=60)
CTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCC > SRR4302547.2605570/1‑94 (MQ=60)
CTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCC > SRR4302547.5930193/1‑94 (MQ=60)
CATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCAC < SRR4302547.4770136/94‑1 (MQ=60)
CATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCAC > SRR4302547.1088917/1‑94 (MQ=60)
ATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACG > SRR4302547.5035356/1‑94 (MQ=60)
ATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACG < SRR4302547.5960367/94‑1 (MQ=60)
TAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGC < SRR4302547.1750420/94‑1 (MQ=60)
AAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCT > SRR4302547.5439224/1‑94 (MQ=60)
AGGTTCGTTTATAGATCGACGGCAATGGGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTC > SRR4302547.2125613/1‑94 (MQ=60)
GTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCAT > SRR4302547.5374771/1‑94 (MQ=60)
GTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCC < SRR4302547.1823521/94‑1 (MQ=60)
TTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCAC < SRR4302547.1035067/94‑1 (MQ=60)
TATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACT > SRR4302547.2622591/1‑94 (MQ=60)
AGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGT > SRR4302547.6753540/1‑94 (MQ=60)
GATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTC > SRR4302547.2647445/1‑94 (MQ=60)
ATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCC < SRR4302547.4105416/94‑1 (MQ=60)
TCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCC > SRR4302547.4907008/1‑94 (MQ=60)
CGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCA < SRR4302547.1994445/94‑1 (MQ=60)
CGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCA < SRR4302547.6265645/94‑1 (MQ=60)
GCGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGTCTCCACGCTCATCTCCACTCGTCCCGAT < SRR4302547.4289997/94‑1 (MQ=60)
ACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGAT > SRR4302547.4460861/1‑94 (MQ=60)
ACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGAT > SRR4302547.1084090/1‑94 (MQ=60)
ACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGAT < SRR4302547.6600762/94‑1 (MQ=60)
ACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGAT < SRR4302547.4495245/94‑1 (MQ=60)
CGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATG > SRR4302547.1308290/1‑94 (MQ=60)
CGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATG < SRR4302547.2643628/94‑1 (MQ=60)
GGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGA < SRR4302547.3656743/94‑1 (MQ=60)
GGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGA > SRR4302547.4330370/1‑94 (MQ=60)
CAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAG < SRR4302547.3785000/94‑1 (MQ=60)
CAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAG > SRR4302547.198838/1‑94 (MQ=60)
CAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAG < SRR4302547.1392764/94‑1 (MQ=60)
CAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAG < SRR4302547.1842048/94‑1 (MQ=60)
CAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCAACGCTCATCTCCACTCGTCCCGATGAAG > SRR4302547.4037485/1‑94 (MQ=60)
AATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGG < SRR4302547.748277/94‑1 (MQ=60)
ATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGG > SRR4302547.5021429/1‑94 (MQ=60)
TGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGA > SRR4302547.5618460/1‑94 (MQ=60)
GTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGAC > SRR4302547.6708652/1‑94 (MQ=60)
GTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGAC < SRR4302547.6396956/94‑1 (MQ=60)
GTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGAC > SRR4302547.5906179/1‑94 (MQ=60)
TGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACG < SRR4302547.4852939/94‑1 (MQ=60)
TGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACG < SRR4302547.3180418/94‑1 (MQ=60)
AGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCT > SRR4302547.1455758/1‑94 (MQ=60)
GTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTT > SRR4302547.1230253/1‑94 (MQ=60)
GTTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTT > SRR4302547.1694647/1‑94 (MQ=60)
TTACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTT < SRR4302547.256157/94‑1 (MQ=60)
ACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCG > SRR4302547.1486754/1‑94 (MQ=60)
ACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCG > SRR4302547.6306257/1‑94 (MQ=60)
ACCTTTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCG > SRR4302547.1007382/1‑94 (MQ=60)
CCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGT > SRR4302547.3452231/1‑94 (MQ=60)
TTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAA > SRR4302547.2129465/1‑94 (MQ=60)
TTTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAA < SRR4302547.3423188/94‑1 (MQ=60)
TTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAA < SRR4302547.3027374/94‑1 (MQ=60)
TTCCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAG < SRR4302547.130591/94‑1 (MQ=60)
TCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGT > SRR4302547.2202258/1‑94 (MQ=60)
CCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTC > SRR4302547.3982017/1‑94 (MQ=60)
CCATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTC > SRR4302547.2849471/1‑94 (MQ=60)
CCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTC < SRR4302547.3335373/94‑1 (MQ=60)
CATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCG < SRR4302547.2955444/94‑1 (MQ=60)
ATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGC < SRR4302547.1814388/94‑1 (MQ=60)
ATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGC < SRR4302547.326841/94‑1 (MQ=60)
ATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGC > SRR4302547.6471739/1‑94 (MQ=60)
ATACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATCAAGAGACGCTTTCGTTAAGTCGC > SRR4302547.3380991/1‑94 (MQ=60)
TACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCG > SRR4302547.1551609/1‑94 (MQ=60)
TACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCG < SRR4302547.1682872/94‑1 (MQ=60)
ACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGC > SRR4302547.1899635/1‑94 (MQ=60)
ACTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGC > SRR4302547.5427899/1‑94 (MQ=60)
CTAATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCC > SRR4302547.1087764/1‑94 (MQ=60)
AATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCcaccg > SRR4302547.93841/1‑89 (MQ=60)
AATTATAAAAAGAAAGTGCAAAAAGGATCATTATGGACTCCACGCTCACCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCG < SRR4302547.3572738/94‑1 (MQ=60)
ATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCCCTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGA < SRR4302547.5791799/94‑1 (MQ=60)
ATTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGA > SRR4302547.3143231/1‑94 (MQ=60)
TTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCGCGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGAC < SRR4302547.2453920/94‑1 (MQ=60)
TTATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGAC > SRR4302547.4104918/1‑94 (MQ=60)
TTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGAC > SRR4302547.3244692/1‑94 (MQ=60)
TATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACG > SRR4302547.5363213/1‑94 (MQ=60)
ATAAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGA > SRR4302547.3450484/1‑94 (MQ=60)
AAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGC < SRR4302547.4520710/94‑1 (MQ=60)
AAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGC > SRR4302547.626140/1‑94 (MQ=60)
AAAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGC < SRR4302547.6263350/94‑1 (MQ=60)
AAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGtgcg < SRR4302547.4312945/94‑5 (MQ=60)
AAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCT > SRR4302547.4067019/1‑94 (MQ=60)
AAAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCT > SRR4302547.4881534/1‑94 (MQ=60)
AAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTG < SRR4302547.3895969/94‑1 (MQ=60)
AAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTG > SRR4302547.5054410/1‑94 (MQ=60)
AAAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTG < SRR4302547.1364461/94‑1 (MQ=60)
AAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTG < SRR4302547.4744215/94‑1 (MQ=60)
AAGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGC > SRR4302547.6507986/1‑94 (MQ=60)
AGACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCG > SRR4302547.4104193/1‑94 (MQ=60)
ACAGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTT > SRR4302547.5619029/1‑94 (MQ=60)
ACAGTGCAAACAGGATCATTATGGACTCCACGCTAATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTT > SRR4302547.2861455/1‑94 (MQ=60)
AGTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAG > SRR4302547.4862649/1‑94 (MQ=60)
GTGCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGG < SRR4302547.5137036/94‑1 (MQ=60)
GCAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCA < SRR4302547.2806564/94‑1 (MQ=60)
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CAGATGCGCTCTGTCGAGGTAGTCTCATAAGGTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCA > NC_000913/2051557‑2051743
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
