Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,822,501 (C)6→7 intergenic (‑132/+13) ygaD ← / ← mltB hypothetical protein/membrane‑bound lytic murein transglycosylase B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,822,4951.C99.1% 770.5 / ‑1.2 213intergenic (‑126/+19)ygaD/mltBhypothetical protein/membrane‑bound lytic murein transglycosylase B
Reads supporting (aligned to +/- strand):  ref base . (2/0);  new base C (113/98);  total (115/98)
Fisher's exact test for biased strand distribution p-value = 5.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01

Only 100 of 247 total aligned reads displayed.

CAAGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTG  >  NC_000913/2822403‑2822582
                                                                                             |                                                                                        
  aGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGcc                                                                                        >  2:1340647/1‑93 (MQ=255)
  aGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGcc                                                                                        >  1:5978633/1‑93 (MQ=255)
  aGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGcc                                                                                        <  1:4700544/93‑1 (MQ=255)
  aGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGcc                                                                                        >  2:3778770/1‑93 (MQ=255)
   gATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGccc                                                                                      >  1:1125196/1‑93 (MQ=255)
    aTAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGcccc                                                                                     <  2:2591139/93‑1 (MQ=255)
     tAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGccccc                                                                                    >  1:728280/1‑93 (MQ=255)
     tAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGccccc                                                                                    >  1:2969809/1‑93 (MQ=255)
     tAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGccccc                                                                                    <  2:191165/93‑1 (MQ=255)
      aGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGcccccc                                                                                   >  2:2457788/1‑93 (MQ=255)
         aCTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGccccccctc                                                                                >  1:1913484/1‑90 (MQ=255)
               gTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTaa                                                                           >  1:3084171/1‑93 (MQ=255)
                tCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTaaa                                                                          <  2:4366427/93‑1 (MQ=255)
                 cAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAAt                                                                         <  2:5935920/93‑1 (MQ=255)
                   ggAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAg                                                                       >  1:3033372/1‑93 (MQ=255)
                   ggAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATGAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAg                                                                       <  2:334799/93‑1 (MQ=255)
                    gAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGc                                                                      <  1:580209/93‑1 (MQ=255)
                     aaGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCt                                                                     <  2:1705402/93‑1 (MQ=255)
                      aGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTa                                                                    <  2:5621527/93‑1 (MQ=255)
                       gATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTAc                                                                   <  2:2046573/93‑1 (MQ=255)
                       gATGGTGTGGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCGCGCCTCCCCTGTTGTAAATAGCtcc                                                                   >  1:986280/1‑91 (MQ=255)
                         tGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTg                                                                 <  1:3919410/93‑1 (MQ=255)
                          ggTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGt                                                                <  1:2164446/93‑1 (MQ=255)
                           gtgtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTa                                                               >  1:4268564/1‑93 (MQ=255)
                            tgtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTAc                                                              <  2:3128876/93‑1 (MQ=255)
                            tgtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTAc                                                              <  2:3649205/93‑1 (MQ=255)
                             gtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACt                                                             >  1:6330788/1‑93 (MQ=255)
                             gtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACt                                                             >  2:5303717/1‑93 (MQ=255)
                               tGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTcg                                                           >  2:5044945/1‑93 (MQ=255)
                               tGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTcg                                                           >  1:2326130/1‑93 (MQ=255)
                                ggCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTcgc                                                          >  1:5886564/1‑93 (MQ=255)
                                ggCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTcgc                                                          <  1:5002166/93‑1 (MQ=255)
                                ggCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTcgc                                                          >  2:4412228/1‑93 (MQ=255)
                                 gCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTcgcg                                                         >  1:2041868/1‑93 (MQ=255)
                                 gCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTcgcg                                                         <  2:2976852/93‑1 (MQ=255)
                                   gTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgcc                                                       >  1:5320214/1‑93 (MQ=255)
                                    ttGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgcca                                                      <  2:6034261/93‑1 (MQ=255)
                                    ttGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgcca                                                      <  1:3480410/93‑1 (MQ=255)
                                    ttGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgcca                                                      >  2:149551/1‑93 (MQ=255)
                                     tGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccag                                                     >  1:4407363/1‑93 (MQ=255)
                                     tGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccag                                                     >  1:3760138/1‑93 (MQ=255)
                                      gCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagc                                                    >  1:660825/1‑93 (MQ=255)
                                      gCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagc                                                    <  2:5757727/93‑1 (MQ=255)
                                      gCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagc                                                    <  2:4507721/93‑1 (MQ=255)
                                       cAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagcg                                                   >  1:5533715/1‑93 (MQ=255)
                                       cAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagcg                                                   <  2:5179112/93‑1 (MQ=255)
                                       cAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagcg                                                   <  2:6412156/93‑1 (MQ=255)
                                        aaTTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgc                                                  <  1:3326078/93‑1 (MQ=255)
                                         aTTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgcc                                                 >  1:5139821/1‑93 (MQ=255)
                                         aTTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgcc                                                 >  1:3647648/1‑93 (MQ=255)
                                         aTTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgcc                                                 >  1:3224345/1‑93 (MQ=255)
                                          ttttACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgcca                                                <  2:327445/93‑1 (MQ=255)
                                           tttACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCAc                                               >  2:2519383/1‑93 (MQ=255)
                                           tttACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCAc                                               >  2:126389/1‑93 (MQ=255)
                                              aCGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGc                                            >  1:4858631/1‑93 (MQ=255)
                                               cGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCt                                           >  2:1540521/1‑93 (MQ=255)
                                               cGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCt                                           <  1:2850352/93‑1 (MQ=255)
                                               cGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCt                                           <  2:842734/93‑1 (MQ=255)
                                                gaggagGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCtt                                          <  1:2931870/93‑1 (MQ=255)
                                                 aggaggATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTg                                         >  2:88114/1‑93 (MQ=255)
                                                  ggaggaTTGAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGt                                        >  1:6475687/1‑93 (MQ=255)
                                                  ggaggaTTCAGAAAAAAGCTTATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTgc                                        >  2:6337775/1‑92 (MQ=255)
                                                   gaggaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTc                                       >  1:6559537/1‑93 (MQ=255)
                                                   gaggaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTc                                       >  1:4367856/1‑93 (MQ=255)
                                                     ggaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCt                                     <  2:6532011/93‑1 (MQ=255)
                                                     ggaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCt                                     <  2:1433615/93‑1 (MQ=255)
                                                      gaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTa                                    >  1:3364181/1‑93 (MQ=255)
                                                       aTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTaa                                   <  2:5773992/93‑1 (MQ=255)
                                                       aTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTaa                                   >  1:3689024/1‑93 (MQ=255)
                                                        ttCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAc                                  <  2:218926/93‑1 (MQ=255)
                                                        ttCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAc                                  >  1:133814/1‑93 (MQ=255)
                                                         tCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACt                                 <  2:3203937/93‑1 (MQ=255)
                                                            gAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGcc                              >  2:2868436/1‑93 (MQ=255)
                                                             aaaaaaGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCa                             <  1:3883448/93‑1 (MQ=255)
                                                             aaaaaaGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCa                             <  1:5432818/93‑1 (MQ=255)
                                                              aaaaaGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAg                            >  1:927400/1‑93 (MQ=255)
                                                              aaaaaGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAg                            <  1:1677059/93‑1 (MQ=255)
                                                                  aGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCg                        >  2:2019509/1‑93 (MQ=255)
                                                                   gCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGc                       <  1:4746441/93‑1 (MQ=255)
                                                                      gATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCAt                    <  1:1258754/93‑1 (MQ=255)
                                                                      gATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCAt                    <  2:4062097/93‑1 (MQ=255)
                                                                       aTTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCAtt                   <  2:4191734/93‑1 (MQ=255)
                                                                       aTTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGAACGCCAtt                   >  2:3397009/1‑93 (MQ=255)
                                                                             cAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTaa             <  2:3264978/93‑1 (MQ=255)
                                                                              agagGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt            >  2:5650149/1‑93 (MQ=255)
                                                                              agagGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt            <  2:3034300/93‑1 (MQ=255)
                                                                              agagGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt            >  1:1613026/1‑93 (MQ=255)
                                                                              agagGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt            <  1:2604780/93‑1 (MQ=255)
                                                                              agagGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt            >  2:4594116/1‑93 (MQ=255)
                                                                               gagGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATg           <  1:2809188/93‑1 (MQ=255)
                                                                               gagGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATg           >  1:4146999/1‑93 (MQ=255)
                                                                                agGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATgg          <  1:14155/93‑1 (MQ=255)
                                                                                agGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATgg          >  2:6140069/1‑93 (MQ=255)
                                                                                  ggAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGt        <  1:494639/93‑1 (MQ=255)
                                                                                   gAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTg       <  2:2313068/93‑1 (MQ=255)
                                                                                    aaGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCCTTGCGTAATGGGTGc      >  1:610754/1‑93 (MQ=255)
                                                                                    aaGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGc      >  2:727861/1‑93 (MQ=255)
                                                                                        tCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCtgtg  >  2:6088946/1‑93 (MQ=255)
                                                                                        tCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCtgtg  >  1:1043978/1‑93 (MQ=255)
                                                                                        tCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGCGCtgtg  >  1:2138702/1‑93 (MQ=255)
                                                                                             |                                                                                        
CAAGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTG  >  NC_000913/2822403‑2822582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGGT  >  NC_000913/2822408‑2822594
                                                                                                |                                                                                             
TAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCC                                                                                               >  SRR4302547.2915996/1‑94 (MQ=60)
  GCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCct                                                                                             >  SRR4302547.4782192/1‑92 (MQ=60)
   CACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCctc                                                                                            >  SRR4302547.1951340/1‑91 (MQ=60)
     CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGACAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTT                                                                                           <  SRR4302547.5517086/94‑1 (MQ=60)
     CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTT                                                                                           <  SRR4302547.4412568/94‑1 (MQ=60)
     CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTT                                                                                           <  SRR4302547.4264560/94‑1 (MQ=60)
     CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTT                                                                                           >  SRR4302547.4560332/1‑94 (MQ=60)
     CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTT                                                                                           >  SRR4302547.5977809/1‑94 (MQ=60)
     CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTT                                                                                           >  SRR4302547.4894350/1‑94 (MQ=60)
         CGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAA                                                                                       >  SRR4302547.3145388/1‑94 (MQ=60)
          GTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAA                                                                                      <  SRR4302547.5133565/94‑1 (MQ=60)
          GTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAA                                                                                      >  SRR4302547.347958/1‑94 (MQ=60)
           TCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAAT                                                                                     <  SRR4302547.3429407/94‑1 (MQ=60)
           TCAGGAAGATGGTGGTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAAT                                                                                     <  SRR4302547.402718/94‑1 (MQ=60)
             AGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAG                                                                                   <  SRR4302547.6228912/94‑1 (MQ=60)
             AGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAG                                                                                   >  SRR4302547.3093695/1‑94 (MQ=60)
             AGAAAGATGGTGTGGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAG                                                                                   <  SRR4302547.3932632/94‑1 (MQ=60)
               GAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCT                                                                                 <  SRR4302547.3003632/94‑1 (MQ=60)
               GAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCT                                                                                 <  SRR4302547.590619/94‑1 (MQ=60)
                AAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTA                                                                                <  SRR4302547.770073/94‑1 (MQ=60)
                 AGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTAC                                                                               >  SRR4302547.3846700/1‑94 (MQ=60)
                 AGATGGTGTGGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCGCGCCTCCCCTGTTGTAAATAGCTCC                                                                               >  SRR4302547.1005472/1‑94 (MQ=60)
                   ATGGTGTTGGCGGTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCCCGCCCCCCCTCCTGTAAATAGCTACTG                                                                             >  SRR4302547.594731/1‑94 (MQ=60)
                    TGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGT                                                                            <  SRR4302547.3999106/94‑1 (MQ=60)
                     GGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTA                                                                           >  SRR4302547.5776260/1‑94 (MQ=60)
                     GGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTA                                                                           <  SRR4302547.2207728/94‑1 (MQ=60)
                     GGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTA                                                                           >  SRR4302547.4356126/1‑94 (MQ=60)
                       TGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACT                                                                         >  SRR4302547.6462540/1‑94 (MQ=60)
                       TGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACT                                                                         <  SRR4302547.6358658/94‑1 (MQ=60)
                       TGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACT                                                                         <  SRR4302547.1565702/94‑1 (MQ=60)
                         TTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCG                                                                       >  SRR4302547.2373272/1‑94 (MQ=60)
                          TGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGC                                                                      >  SRR4302547.6008441/1‑94 (MQ=60)
                           GGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCG                                                                     >  SRR4302547.2082597/1‑94 (MQ=60)
                           GGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCG                                                                     <  SRR4302547.1931645/94‑1 (MQ=60)
                           GGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCG                                                                     <  SRR4302547.5105570/94‑1 (MQ=60)
                           GGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCGCCCTCTTGTAAATAGCTACTGTACTCGCG                                                                     >  SRR4302547.3445043/1‑94 (MQ=60)
                            GCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGC                                                                    >  SRR4302547.4413788/1‑94 (MQ=60)
                             CGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCC                                                                   >  SRR4302547.5429903/1‑94 (MQ=60)
                             CGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCC                                                                   >  SRR4302547.2896067/1‑94 (MQ=60)
                               TTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAG                                                                 <  SRR4302547.3551408/94‑1 (MQ=60)
                               TTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAG                                                                 >  SRR4302547.4498188/1‑94 (MQ=60)
                               TTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAG                                                                 >  SRR4302547.3836857/1‑94 (MQ=60)
                               TTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAG                                                                 >  SRR4302547.4153571/1‑94 (MQ=60)
                                TGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGC                                                                >  SRR4302547.672991/1‑94 (MQ=60)
                                TGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGC                                                                <  SRR4302547.191997/94‑1 (MQ=60)
                                 GCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCG                                                               >  SRR4302547.5647924/1‑94 (MQ=60)
                                   AATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCC                                                             >  SRR4302547.5245704/1‑94 (MQ=60)
                                   AATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCC                                                             >  SRR4302547.3722045/1‑94 (MQ=60)
                                   AATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCC                                                             <  SRR4302547.3393284/94‑1 (MQ=60)
                                   AATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCC                                                             >  SRR4302547.3288683/1‑94 (MQ=60)
                                    ATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCA                                                            >  SRR4302547.659863/1‑94 (MQ=60)
                                    ATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCA                                                            >  SRR4302547.3320158/1‑94 (MQ=60)
                                     TTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCAC                                                           >  SRR4302547.4605277/1‑94 (MQ=60)
                                      TTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACG                                                          <  SRR4302547.3671742/94‑1 (MQ=60)
                                       TTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGG                                                         >  SRR4302547.697835/1‑94 (MQ=60)
                                       TTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGG                                                         >  SRR4302547.6711295/1‑94 (MQ=60)
                                       TTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGG                                                         >  SRR4302547.1645492/1‑94 (MQ=60)
                                        TACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGC                                                        >  SRR4302547.4959295/1‑94 (MQ=60)
                                         ACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCT                                                       <  SRR4302547.1127547/94‑1 (MQ=60)
                                         ACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCT                                                       <  SRR4302547.3094452/94‑1 (MQ=60)
                                          CGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTT                                                      <  SRR4302547.2907290/94‑1 (MQ=60)
                                           GAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTG                                                     >  SRR4302547.5182986/1‑94 (MQ=60)
                                           GAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTG                                                     <  SRR4302547.2990305/94‑1 (MQ=60)
                                           GAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTG                                                     <  SRR4302547.3758690/94‑1 (MQ=60)
                                            AGGAGGATTGAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGT                                                    >  SRR4302547.6610520/1‑94 (MQ=60)
                                            AGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGT                                                    >  SRR4302547.4938983/1‑94 (MQ=60)
                                            AGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGT                                                    >  SRR4302547.5094140/1‑94 (MQ=60)
                                             GGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTC                                                   >  SRR4302547.4457566/1‑94 (MQ=60)
                                             GGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTC                                                   >  SRR4302547.6696127/1‑94 (MQ=60)
                                             GGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTC                                                   >  SRR4302547.6750381/1‑94 (MQ=60)
                                              GAGAATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGGGCCAGCGCCACGGCTTGTCC                                                  <  SRR4302547.2430719/94‑1 (MQ=60)
                                               AGGATTCAGAAAAAAGCTGATTAGCCAGAGGGCAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCT                                                 >  SRR4302547.1553779/1‑94 (MQ=60)
                                               AGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCT                                                 >  SRR4302547.4981467/1‑94 (MQ=60)
                                               AGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCT                                                 >  SRR4302547.2109271/1‑94 (MQ=60)
                                               AGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCT                                                 >  SRR4302547.1287354/1‑94 (MQ=60)
                                                GGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTA                                                >  SRR4302547.3432489/1‑94 (MQ=60)
                                                 GATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAA                                               <  SRR4302547.1195619/94‑1 (MQ=60)
                                                 GATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAA                                               >  SRR4302547.3764334/1‑94 (MQ=60)
                                                 GATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAA                                               <  SRR4302547.3235784/94‑1 (MQ=60)
                                                  ATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAC                                              >  SRR4302547.2359418/1‑94 (MQ=60)
                                                  ATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAC                                              >  SRR4302547.136234/1‑94 (MQ=60)
                                                  ATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAC                                              <  SRR4302547.1365011/94‑1 (MQ=60)
                                                   TTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACT                                             <  SRR4302547.372178/94‑1 (MQ=60)
                                                   TTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACT                                             >  SRR4302547.2711968/1‑94 (MQ=60)
                                                   TTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTG                                            >  SRR4302547.2186449/1‑94 (MQ=60)
                                                    TCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTG                                            <  SRR4302547.3997114/94‑1 (MQ=60)
                                                      AGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCC                                          >  SRR4302547.6692424/1‑94 (MQ=60)
                                                       GAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCA                                         >  SRR4302547.1010189/1‑94 (MQ=60)
                                                        AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG                                        <  SRR4302547.5545124/94‑1 (MQ=60)
                                                        AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG                                        >  SRR4302547.945311/1‑94 (MQ=60)
                                                        AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG                                        <  SRR4302547.6072327/94‑1 (MQ=60)
                                                        AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG                                        <  SRR4302547.2051572/94‑1 (MQ=60)
                                                        AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG                                        <  SRR4302547.5019054/94‑1 (MQ=60)
                                                        AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG                                        >  SRR4302547.4820095/1‑94 (MQ=60)
                                                        AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG                                        <  SRR4302547.3962447/94‑1 (MQ=60)
                                                         AAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGA                                       <  SRR4302547.1710097/94‑1 (MQ=60)
                                                          AAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGAC                                      <  SRR4302547.5563953/94‑1 (MQ=60)
                                                           AAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACC                                     <  SRR4302547.5510640/94‑1 (MQ=60)
                                                           AAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACC                                     >  SRR4302547.1373149/1‑94 (MQ=60)
                                                           AAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACC                                     >  SRR4302547.3320206/1‑94 (MQ=60)
                                                             AGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGC                                   >  SRR4302547.3129382/1‑94 (MQ=60)
                                                             AGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGC                                   >  SRR4302547.6428606/1‑94 (MQ=60)
                                                              GCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCC                                  <  SRR4302547.4844801/94‑1 (MQ=60)
                                                              GCTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTATACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCC                                  <  SRR4302547.5845829/94‑1 (MQ=60)
                                                               CTGATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGGCACGGCTTGTCCTAACTGCCCGACCGGCA                                 >  SRR4302547.3780938/1‑94 (MQ=60)
                                                                 GATTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATT                               <  SRR4302547.1284129/94‑1 (MQ=60)
                                                                   TTAGCCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGC                             >  SRR4302547.6057132/1‑94 (MQ=60)
                                                                       CCAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAA                         <  SRR4302547.5296977/94‑1 (MQ=60)
                                                                        CAGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAT                        >  SRR4302547.1644969/1‑94 (MQ=60)
                                                                         AGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATG                       <  SRR4302547.3031676/94‑1 (MQ=60)
                                                                         AGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATG                       >  SRR4302547.2929530/1‑94 (MQ=60)
                                                                         AGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATG                       <  SRR4302547.2657279/94‑1 (MQ=60)
                                                                         AGAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATG                       >  SRR4302547.4231433/1‑94 (MQ=60)
                                                                          GAGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGG                      <  SRR4302547.2865401/94‑1 (MQ=60)
                                                                           AGGGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGG                     <  SRR4302547.14414/94‑1 (MQ=60)
                                                                             GGAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTG                   <  SRR4302547.503664/94‑1 (MQ=60)
                                                                              GAAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCCTTGCGTAATGGGTGC                  >  SRR4302547.622095/1‑94 (MQ=60)
                                                                               AAGCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAAACCGCCATTGCGCAATGGGTGCT                 >  SRR4302547.4490357/1‑94 (MQ=60)
                                                                                 GCTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGG               >  SRR4302547.2271423/1‑94 (MQ=60)
                                                                                  CTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTG              >  SRR4302547.1064586/1‑94 (MQ=60)
                                                                                  CTCACGCCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGCGCTGTG              >  SRR4302547.2181345/1‑94 (MQ=60)
                                                                                     ccgcCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTT           <  SRR4302547.269025/90‑1 (MQ=60)
                                                                                      cgcCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTG          <  SRR4302547.2600580/91‑1 (MQ=60)
                                                                                      cgcCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTG          <  SRR4302547.4126474/91‑1 (MQ=60)
                                                                                       gcCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGT         >  SRR4302547.4566329/3‑94 (MQ=60)
                                                                                       gcCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGT         >  SRR4302547.1766940/3‑94 (MQ=60)
                                                                                       gcCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGT         <  SRR4302547.1234668/92‑1 (MQ=60)
                                                                                       gcCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGT         >  SRR4302547.1362359/3‑94 (MQ=60)
                                                                                       gcCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGG         >  SRR4302547.132470/3‑94 (MQ=60)
                                                                                       CCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTA        >  SRR4302547.6130003/1‑94 (MQ=60)
                                                                                       CCCCCCCTCGTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTA        >  SRR4302547.6608693/1‑94 (MQ=60)
                                                                                         CCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAA       >  SRR4302547.1710781/1‑94 (MQ=60)
                                                                                         CCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAA       >  SRR4302547.4448310/1‑94 (MQ=60)
                                                                                         CCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTACTAACTGCCAGACCGCCATTGCGTAATGGGCGCTGTGGTTGTAA       >  SRR4302547.2794872/1‑94 (MQ=60)
                                                                                          CCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAAC      <  SRR4302547.3373949/94‑1 (MQ=60)
                                                                                          CCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAAC      <  SRR4302547.540501/94‑1 (MQ=60)
                                                                                          CCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAAC      <  SRR4302547.1902478/94‑1 (MQ=60)
                                                                                            CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACG     >  SRR4302547.2086895/1‑94 (MQ=60)
                                                                                            CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGGCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGATGTAACG     >  SRR4302547.5131684/1‑94 (MQ=60)
                                                                                            CCCCGCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACG     <  SRR4302547.1225356/94‑1 (MQ=60)
                                                                                               CCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGG   <  SRR4302547.1148200/94‑1 (MQ=60)
                                                                                               CCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGG   >  SRR4302547.4351621/1‑94 (MQ=60)
                                                                                               CCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGG   <  SRR4302547.6179869/94‑1 (MQ=60)
                                                                                                CTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGGT  >  SRR4302547.5122656/1‑94 (MQ=60)
                                                                                                CTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGGG  >  SRR4302547.3957095/1‑94 (MQ=60)
                                                                                                |                                                                                             
TAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCCCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGGT  >  NC_000913/2822408‑2822594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: