Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,822,501 |
(C)6→7 |
intergenic (‑132/+13) |
ygaD ← / ← mltB |
hypothetical protein/membrane‑bound lytic murein transglycosylase B |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,822,495 | 1 | . | C | 99.1%
| 770.5
/ ‑1.2
| 213 | intergenic (‑126/+19) | ygaD/mltB | hypothetical protein/membrane‑bound lytic murein transglycosylase B |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base C (113/98); total (115/98) |
| Fisher's exact test for biased strand distribution p-value = 5.01e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 |
Only 100 of 247 total aligned reads displayed.
CAAGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑CC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTG > NC_000913/2822403‑2822582
|
aGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc > 2:1340647/1‑93 (MQ=255)
aGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc > 1:5978633/1‑93 (MQ=255)
aGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc < 1:4700544/93‑1 (MQ=255)
aGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc > 2:3778770/1‑93 (MQ=255)
gATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc‑c > 1:1125196/1‑93 (MQ=255)
aTAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc‑cc < 2:2591139/93‑1 (MQ=255)
tAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc‑ccc > 1:728280/1‑93 (MQ=255)
tAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc‑ccc > 1:2969809/1‑93 (MQ=255)
tAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc‑ccc < 2:191165/93‑1 (MQ=255)
aGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc‑cccc > 2:2457788/1‑93 (MQ=255)
aCTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑cc‑ccccctc > 1:1913484/1‑90 (MQ=255)
gTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTaa > 1:3084171/1‑93 (MQ=255)
tCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTaaa < 2:4366427/93‑1 (MQ=255)
cAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAAt < 2:5935920/93‑1 (MQ=255)
ggAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAg > 1:3033372/1‑93 (MQ=255)
ggAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATGAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAg < 2:334799/93‑1 (MQ=255)
gAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGc < 1:580209/93‑1 (MQ=255)
aaGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCt < 2:1705402/93‑1 (MQ=255)
aGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTa < 2:5621527/93‑1 (MQ=255)
gATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTAc < 2:2046573/93‑1 (MQ=255)
gATGGTGTGGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCGCG‑CCTCCCCTGTTGTAAATAGCtcc > 1:986280/1‑91 (MQ=255)
tGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTg < 1:3919410/93‑1 (MQ=255)
ggTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGt < 1:2164446/93‑1 (MQ=255)
gtgtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTa > 1:4268564/1‑93 (MQ=255)
tgtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTAc < 2:3128876/93‑1 (MQ=255)
tgtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTAc < 2:3649205/93‑1 (MQ=255)
gtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACt > 1:6330788/1‑93 (MQ=255)
gtTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACt > 2:5303717/1‑93 (MQ=255)
tGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTcg > 2:5044945/1‑93 (MQ=255)
tGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTcg > 1:2326130/1‑93 (MQ=255)
ggCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTcgc > 1:5886564/1‑93 (MQ=255)
ggCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTcgc < 1:5002166/93‑1 (MQ=255)
ggCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTcgc > 2:4412228/1‑93 (MQ=255)
gCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTcgcg > 1:2041868/1‑93 (MQ=255)
gCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTcgcg < 2:2976852/93‑1 (MQ=255)
gTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgcc > 1:5320214/1‑93 (MQ=255)
ttGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgcca < 2:6034261/93‑1 (MQ=255)
ttGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgcca < 1:3480410/93‑1 (MQ=255)
ttGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgcca > 2:149551/1‑93 (MQ=255)
tGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccag > 1:4407363/1‑93 (MQ=255)
tGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccag > 1:3760138/1‑93 (MQ=255)
gCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagc > 1:660825/1‑93 (MQ=255)
gCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagc < 2:5757727/93‑1 (MQ=255)
gCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagc < 2:4507721/93‑1 (MQ=255)
cAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagcg > 1:5533715/1‑93 (MQ=255)
cAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagcg < 2:5179112/93‑1 (MQ=255)
cAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagcg < 2:6412156/93‑1 (MQ=255)
aaTTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgc < 1:3326078/93‑1 (MQ=255)
aTTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgcc > 1:5139821/1‑93 (MQ=255)
aTTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgcc > 1:3647648/1‑93 (MQ=255)
aTTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgcc > 1:3224345/1‑93 (MQ=255)
ttttACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCgcgccagcgcca < 2:327445/93‑1 (MQ=255)
tttACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCAc > 2:2519383/1‑93 (MQ=255)
tttACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCAc > 2:126389/1‑93 (MQ=255)
aCGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGc > 1:4858631/1‑93 (MQ=255)
cGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCt > 2:1540521/1‑93 (MQ=255)
cGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCt < 1:2850352/93‑1 (MQ=255)
cGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCt < 2:842734/93‑1 (MQ=255)
gaggagGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCtt < 1:2931870/93‑1 (MQ=255)
aggaggATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTg > 2:88114/1‑93 (MQ=255)
ggaggaTTGAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGt > 1:6475687/1‑93 (MQ=255)
ggaggaTTCAGAAAAAAGCTTATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTgc > 2:6337775/1‑92 (MQ=255)
gaggaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTc > 1:6559537/1‑93 (MQ=255)
gaggaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTc > 1:4367856/1‑93 (MQ=255)
ggaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCt < 2:6532011/93‑1 (MQ=255)
ggaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCt < 2:1433615/93‑1 (MQ=255)
gaTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTa > 1:3364181/1‑93 (MQ=255)
aTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTaa < 2:5773992/93‑1 (MQ=255)
aTTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTaa > 1:3689024/1‑93 (MQ=255)
ttCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAc < 2:218926/93‑1 (MQ=255)
ttCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAc > 1:133814/1‑93 (MQ=255)
tCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACt < 2:3203937/93‑1 (MQ=255)
gAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGcc > 2:2868436/1‑93 (MQ=255)
aaaaaaGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCa < 1:3883448/93‑1 (MQ=255)
aaaaaaGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCa < 1:5432818/93‑1 (MQ=255)
aaaaaGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAg > 1:927400/1‑93 (MQ=255)
aaaaaGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAg < 1:1677059/93‑1 (MQ=255)
aGCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCg > 2:2019509/1‑93 (MQ=255)
gCTGATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGc < 1:4746441/93‑1 (MQ=255)
gATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCAt < 1:1258754/93‑1 (MQ=255)
gATTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCAt < 2:4062097/93‑1 (MQ=255)
aTTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCAtt < 2:4191734/93‑1 (MQ=255)
aTTAGCCAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGAACGCCAtt > 2:3397009/1‑93 (MQ=255)
cAGAGGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTaa < 2:3264978/93‑1 (MQ=255)
agagGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt > 2:5650149/1‑93 (MQ=255)
agagGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt < 2:3034300/93‑1 (MQ=255)
agagGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt > 1:1613026/1‑93 (MQ=255)
agagGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt < 1:2604780/93‑1 (MQ=255)
agagGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAt > 2:4594116/1‑93 (MQ=255)
gagGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATg < 1:2809188/93‑1 (MQ=255)
gagGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATg > 1:4146999/1‑93 (MQ=255)
agGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATgg < 1:14155/93‑1 (MQ=255)
agGGAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATgg > 2:6140069/1‑93 (MQ=255)
ggAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGt < 1:494639/93‑1 (MQ=255)
gAAGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTg < 2:2313068/93‑1 (MQ=255)
aaGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCCTTGCGTAATGGGTGc > 1:610754/1‑93 (MQ=255)
aaGCTCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGc > 2:727861/1‑93 (MQ=255)
tCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCtgtg > 2:6088946/1‑93 (MQ=255)
tCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCtgtg > 1:1043978/1‑93 (MQ=255)
tCACGCCC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGCGCtgtg > 1:2138702/1‑93 (MQ=255)
|
CAAGATAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑CC‑CCCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTG > NC_000913/2822403‑2822582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑CC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGGT > NC_000913/2822408‑2822594
|
TAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑CC‑C‑CCC > SRR4302547.2915996/1‑94 (MQ=60)
GCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑CC‑C‑CCCct > SRR4302547.4782192/1‑92 (MQ=60)
CACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑CC‑C‑CCCctc > SRR4302547.1951340/1‑91 (MQ=60)
CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGACAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTT < SRR4302547.5517086/94‑1 (MQ=60)
CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTT < SRR4302547.4412568/94‑1 (MQ=60)
CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTT < SRR4302547.4264560/94‑1 (MQ=60)
CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTT > SRR4302547.4560332/1‑94 (MQ=60)
CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTT > SRR4302547.5977809/1‑94 (MQ=60)
CTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTT > SRR4302547.4894350/1‑94 (MQ=60)
CGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAA > SRR4302547.3145388/1‑94 (MQ=60)
GTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAA < SRR4302547.5133565/94‑1 (MQ=60)
GTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAA > SRR4302547.347958/1‑94 (MQ=60)
TCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAAT < SRR4302547.3429407/94‑1 (MQ=60)
TCAGGAAGATGGTGGTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAAT < SRR4302547.402718/94‑1 (MQ=60)
AGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAG < SRR4302547.6228912/94‑1 (MQ=60)
AGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAG > SRR4302547.3093695/1‑94 (MQ=60)
AGAAAGATGGTGTGGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAG < SRR4302547.3932632/94‑1 (MQ=60)
GAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCT < SRR4302547.3003632/94‑1 (MQ=60)
GAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCT < SRR4302547.590619/94‑1 (MQ=60)
AAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTA < SRR4302547.770073/94‑1 (MQ=60)
AGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTAC > SRR4302547.3846700/1‑94 (MQ=60)
AGATGGTGTGGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCGCG‑CCTC‑CCCTGTTGTAAATAGCTCC > SRR4302547.1005472/1‑94 (MQ=60)
ATGGTGTTGGCGGTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCCCGCCC‑C‑CCCTCCTGTAAATAGCTACTG > SRR4302547.594731/1‑94 (MQ=60)
TGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGT < SRR4302547.3999106/94‑1 (MQ=60)
GGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTA > SRR4302547.5776260/1‑94 (MQ=60)
GGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTA < SRR4302547.2207728/94‑1 (MQ=60)
GGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTA > SRR4302547.4356126/1‑94 (MQ=60)
TGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACT > SRR4302547.6462540/1‑94 (MQ=60)
TGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACT < SRR4302547.6358658/94‑1 (MQ=60)
TGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACT < SRR4302547.1565702/94‑1 (MQ=60)
TTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCG > SRR4302547.2373272/1‑94 (MQ=60)
TGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGC > SRR4302547.6008441/1‑94 (MQ=60)
GGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCG > SRR4302547.2082597/1‑94 (MQ=60)
GGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCG < SRR4302547.1931645/94‑1 (MQ=60)
GGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCG < SRR4302547.5105570/94‑1 (MQ=60)
GGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑CC‑CGCCCTCTTGTAAATAGCTACTGTACTCGCG > SRR4302547.3445043/1‑94 (MQ=60)
GCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGC > SRR4302547.4413788/1‑94 (MQ=60)
CGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCC > SRR4302547.5429903/1‑94 (MQ=60)
CGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCC > SRR4302547.2896067/1‑94 (MQ=60)
TTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAG < SRR4302547.3551408/94‑1 (MQ=60)
TTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAG > SRR4302547.4498188/1‑94 (MQ=60)
TTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAG > SRR4302547.3836857/1‑94 (MQ=60)
TTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAG > SRR4302547.4153571/1‑94 (MQ=60)
TGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGC > SRR4302547.672991/1‑94 (MQ=60)
TGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGC < SRR4302547.191997/94‑1 (MQ=60)
GCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCG > SRR4302547.5647924/1‑94 (MQ=60)
AATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCC > SRR4302547.5245704/1‑94 (MQ=60)
AATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCC > SRR4302547.3722045/1‑94 (MQ=60)
AATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCC < SRR4302547.3393284/94‑1 (MQ=60)
AATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCC > SRR4302547.3288683/1‑94 (MQ=60)
ATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCA > SRR4302547.659863/1‑94 (MQ=60)
ATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCA > SRR4302547.3320158/1‑94 (MQ=60)
TTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCAC > SRR4302547.4605277/1‑94 (MQ=60)
TTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACG < SRR4302547.3671742/94‑1 (MQ=60)
TTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGG > SRR4302547.697835/1‑94 (MQ=60)
TTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGG > SRR4302547.6711295/1‑94 (MQ=60)
TTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGG > SRR4302547.1645492/1‑94 (MQ=60)
TACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGC > SRR4302547.4959295/1‑94 (MQ=60)
ACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCT < SRR4302547.1127547/94‑1 (MQ=60)
ACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCT < SRR4302547.3094452/94‑1 (MQ=60)
CGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTT < SRR4302547.2907290/94‑1 (MQ=60)
GAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTG > SRR4302547.5182986/1‑94 (MQ=60)
GAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTG < SRR4302547.2990305/94‑1 (MQ=60)
GAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTG < SRR4302547.3758690/94‑1 (MQ=60)
AGGAGGATTGAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGT > SRR4302547.6610520/1‑94 (MQ=60)
AGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGT > SRR4302547.4938983/1‑94 (MQ=60)
AGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGT > SRR4302547.5094140/1‑94 (MQ=60)
GGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTC > SRR4302547.4457566/1‑94 (MQ=60)
GGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTC > SRR4302547.6696127/1‑94 (MQ=60)
GGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTC > SRR4302547.6750381/1‑94 (MQ=60)
GAGAATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGGGCCAGCGCCACGGCTTGTCC < SRR4302547.2430719/94‑1 (MQ=60)
AGGATTCAGAAAAAAGCTGATTAGCCAGAGGGCAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCT > SRR4302547.1553779/1‑94 (MQ=60)
AGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCT > SRR4302547.4981467/1‑94 (MQ=60)
AGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCT > SRR4302547.2109271/1‑94 (MQ=60)
AGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCT > SRR4302547.1287354/1‑94 (MQ=60)
GGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTA > SRR4302547.3432489/1‑94 (MQ=60)
GATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAA < SRR4302547.1195619/94‑1 (MQ=60)
GATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAA > SRR4302547.3764334/1‑94 (MQ=60)
GATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAA < SRR4302547.3235784/94‑1 (MQ=60)
ATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAC > SRR4302547.2359418/1‑94 (MQ=60)
ATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAC > SRR4302547.136234/1‑94 (MQ=60)
ATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAAC < SRR4302547.1365011/94‑1 (MQ=60)
TTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACT < SRR4302547.372178/94‑1 (MQ=60)
TTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACT > SRR4302547.2711968/1‑94 (MQ=60)
TTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑CC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTG > SRR4302547.2186449/1‑94 (MQ=60)
TCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTG < SRR4302547.3997114/94‑1 (MQ=60)
AGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCC > SRR4302547.6692424/1‑94 (MQ=60)
GAAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCA > SRR4302547.1010189/1‑94 (MQ=60)
AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG < SRR4302547.5545124/94‑1 (MQ=60)
AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG > SRR4302547.945311/1‑94 (MQ=60)
AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG < SRR4302547.6072327/94‑1 (MQ=60)
AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG < SRR4302547.2051572/94‑1 (MQ=60)
AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG < SRR4302547.5019054/94‑1 (MQ=60)
AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG > SRR4302547.4820095/1‑94 (MQ=60)
AAAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAG < SRR4302547.3962447/94‑1 (MQ=60)
AAAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGA < SRR4302547.1710097/94‑1 (MQ=60)
AAAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGAC < SRR4302547.5563953/94‑1 (MQ=60)
AAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACC < SRR4302547.5510640/94‑1 (MQ=60)
AAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACC > SRR4302547.1373149/1‑94 (MQ=60)
AAAGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACC > SRR4302547.3320206/1‑94 (MQ=60)
AGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGC > SRR4302547.3129382/1‑94 (MQ=60)
AGCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGC > SRR4302547.6428606/1‑94 (MQ=60)
GCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCC < SRR4302547.4844801/94‑1 (MQ=60)
GCTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTATACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCC < SRR4302547.5845829/94‑1 (MQ=60)
CTGATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGGCACGGCTTGTCCTAACTGCCCGACCGGCA > SRR4302547.3780938/1‑94 (MQ=60)
GATTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATT < SRR4302547.1284129/94‑1 (MQ=60)
TTAGCCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGC > SRR4302547.6057132/1‑94 (MQ=60)
CCAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAA < SRR4302547.5296977/94‑1 (MQ=60)
CAGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAAT > SRR4302547.1644969/1‑94 (MQ=60)
AGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATG < SRR4302547.3031676/94‑1 (MQ=60)
AGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATG > SRR4302547.2929530/1‑94 (MQ=60)
AGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATG < SRR4302547.2657279/94‑1 (MQ=60)
AGAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATG > SRR4302547.4231433/1‑94 (MQ=60)
GAGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGG < SRR4302547.2865401/94‑1 (MQ=60)
AGGGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGG < SRR4302547.14414/94‑1 (MQ=60)
GGAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTG < SRR4302547.503664/94‑1 (MQ=60)
GAAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCCTTGCGTAATGGGTGC > SRR4302547.622095/1‑94 (MQ=60)
AAGCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAAACCGCCATTGCGCAATGGGTGCT > SRR4302547.4490357/1‑94 (MQ=60)
GCTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGG > SRR4302547.2271423/1‑94 (MQ=60)
CTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTG > SRR4302547.1064586/1‑94 (MQ=60)
CTCACGCCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGCGCTGTG > SRR4302547.2181345/1‑94 (MQ=60)
ccgcCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTT < SRR4302547.269025/90‑1 (MQ=60)
cgcCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTG < SRR4302547.2600580/91‑1 (MQ=60)
cgcCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTG < SRR4302547.4126474/91‑1 (MQ=60)
gcCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGT > SRR4302547.4566329/3‑94 (MQ=60)
gcCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGT > SRR4302547.1766940/3‑94 (MQ=60)
gcCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGT < SRR4302547.1234668/92‑1 (MQ=60)
gcCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGT > SRR4302547.1362359/3‑94 (MQ=60)
gcCC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGG > SRR4302547.132470/3‑94 (MQ=60)
C‑CC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTA > SRR4302547.6130003/1‑94 (MQ=60)
C‑CC‑C‑CCCTCGTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTA > SRR4302547.6608693/1‑94 (MQ=60)
CC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAA > SRR4302547.1710781/1‑94 (MQ=60)
CC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAA > SRR4302547.4448310/1‑94 (MQ=60)
CC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTACTAACTGCCAGACCGCCATTGCGTAATGGGCGCTGTGGTTGTAA > SRR4302547.2794872/1‑94 (MQ=60)
C‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAAC < SRR4302547.3373949/94‑1 (MQ=60)
C‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAAC < SRR4302547.540501/94‑1 (MQ=60)
C‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAAC < SRR4302547.1902478/94‑1 (MQ=60)
C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACG > SRR4302547.2086895/1‑94 (MQ=60)
C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGGCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGATGTAACG > SRR4302547.5131684/1‑94 (MQ=60)
C‑CCCGCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACG < SRR4302547.1225356/94‑1 (MQ=60)
CCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGG < SRR4302547.1148200/94‑1 (MQ=60)
CCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGG > SRR4302547.4351621/1‑94 (MQ=60)
CCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGG < SRR4302547.6179869/94‑1 (MQ=60)
CTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGGT > SRR4302547.5122656/1‑94 (MQ=60)
CTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGGG > SRR4302547.3957095/1‑94 (MQ=60)
|
TAGCACTTTCGTCAGGAAGATGGTGTTGGCGTTGCAATTTTACGAGGAGGATTCAGAAAAAAGCTGATTAGCCAGAGGGAAGCTCACG‑CC‑C‑CCCTCTTGTAAATAGCTACTGTACTCGCGCCAGCGCCACGGCTTGTCCTAACTGCCAGACCGCCATTGCGTAATGGGTGCTGTGGTTGTAACGGGT > NC_000913/2822408‑2822594
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |