Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,117,911 |
A→G |
V462A (GTA→GCA) |
yghK ← |
putative permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,117,911 | 0 | A | G | 86.0%
| 478.7
/ 60.5
| 185 | V462A (GTA→GCA) | yghK | putative permease |
| Reads supporting (aligned to +/- strand): ref base A (12/14); new base G (103/56); total (115/70) |
| Fisher's exact test for biased strand distribution p-value = 8.26e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.50e-01 |
Only 100 of 210 total aligned reads displayed.
GCAGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGAA > NC_000913/3117819‑3118000
|
gggTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATgcgc > 1:3508019/1‑93 (MQ=255)
gggTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATgcgc > 2:4637402/1‑93 (MQ=255)
gggTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATgcgc > 1:5335630/1‑93 (MQ=255)
gggTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGc > 1:48471/1‑93 (MQ=255)
ggTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGcc > 2:3019421/1‑93 (MQ=255)
gtgtCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACATAACAGGGCGTTAGAGGAGGTTTCCGAGCCGGTAAGGAATGCGccc < 2:4308726/93‑1 (MQ=255)
tgtCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCcca < 2:4979540/93‑1 (MQ=255)
tgtCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCcca < 1:1053742/93‑1 (MQ=255)
tgtCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCcca < 1:3198754/93‑1 (MQ=255)
gtCAGAGACGTTGATTTGCTGCGCCATGATCGATTGCAGTGAACCAAACGGGGCGTTGGAGGAGGTGTCGGAGCCGGTAAGGAATGCGCccag < 1:2162501/93‑1 (MQ=255)
tCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCccagc < 2:6369354/93‑1 (MQ=255)
agagACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCccagcca < 2:6175286/93‑1 (MQ=255)
agagACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCccagcca < 2:5324027/93‑1 (MQ=255)
gagaCGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCccagccag > 1:4581023/1‑93 (MQ=255)
gagaCGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCccagccag > 1:1946769/1‑93 (MQ=255)
gagaCGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCccagccag > 1:6326688/1‑93 (MQ=255)
gagaCGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCccagccac > 1:5109502/1‑92 (MQ=255)
agaCGTTGATTTGCTGCCCCGTGGTCGATTGCAGTGAGCCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCcagccagc < 2:4119925/93‑1 (MQ=255)
aCGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACAAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCg < 2:5129812/93‑1 (MQ=255)
cGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCga < 2:2199119/93‑1 (MQ=255)
cGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCga > 1:3271572/1‑93 (MQ=255)
gTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCgag > 1:1362143/1‑93 (MQ=255)
gTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCgag > 2:6530046/1‑93 (MQ=255)
ttGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCgaga > 2:806408/1‑93 (MQ=255)
aTTTGCGGCCCCGTGGTCGATTGCAGTAAACCAACCAGGGCTTTAGAGGAGGGGCCGGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAAc < 2:163795/93‑1 (MQ=255)
gctgcGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTg > 1:282140/1‑93 (MQ=255)
gctgcGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTg < 2:4370877/93‑1 (MQ=255)
tgcGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTgag > 1:4816926/1‑93 (MQ=255)
tgcGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTgag > 2:6006134/1‑93 (MQ=255)
gcgcCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTgaga > 2:56375/1‑93 (MQ=255)
cgcTGTGGTCGATTGCAGTGACCCAAACGGGGCGTGAGAGGGGGTTTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGagaa < 2:4881890/93‑1 (MQ=25)
cgcCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGagaa < 1:4331234/93‑1 (MQ=255)
cgcCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAAAGGTGagaa < 1:6458721/93‑1 (MQ=255)
gcCGTGGTCGATTGCGGTGAACCAAACGGGCCGTTAGAGGAGGTGCCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGagaag < 2:1066363/93‑1 (MQ=255)
gcCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGagaag > 1:2467079/1‑93 (MQ=255)
gcCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGagaag > 2:1820786/1‑93 (MQ=255)
ccGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGagaaga > 1:5425625/1‑93 (MQ=255)
ccGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGagaaga > 1:4008096/1‑93 (MQ=255)
cGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAgaagaa > 1:4138334/1‑93 (MQ=255)
cGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAgaagaa > 1:6253446/1‑93 (MQ=255)
gTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAAc > 1:823964/1‑93 (MQ=255)
gTGGTCGATTGCAGGAACCCAAACGGGCCGTTAGAGGAGGTGCCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAAc < 2:158886/93‑1 (MQ=255)
tggtggATTGCAGTGACCAAAACAGGGCGTGAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACg < 1:912833/93‑1 (MQ=255)
tGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACg > 2:5793108/1‑93 (MQ=255)
ggTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACgg > 1:1136135/1‑93 (MQ=255)
gATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAAc > 1:968672/1‑93 (MQ=255)
aTTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACa > 1:4198091/1‑93 (MQ=255)
aTTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACa > 1:1672233/1‑93 (MQ=255)
aTTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACa > 2:2969266/1‑93 (MQ=255)
ttGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACAt > 1:5193632/1‑93 (MQ=255)
ttGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACAt > 1:2380302/1‑93 (MQ=255)
tGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATc > 1:3098814/1‑93 (MQ=255)
tGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATc > 1:1900505/1‑93 (MQ=255)
gCAGTGAACCAAACAGGGCTTTAGAGGGGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCa < 2:5524842/93‑1 (MQ=255)
gCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTTCGAGCCGGTAAGGAATGCGCCCAGGCAGCCGAGAAACGGTGAGAAGAACGAGAACATCa > 2:3287418/1‑93 (MQ=255)
gCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCa > 1:603504/1‑93 (MQ=255)
cAGTGACCAAAACGGGCCGTTAGAGGAGGTGCCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCAc < 1:6403471/93‑1 (MQ=25)
cAGTGACCAAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCAc < 1:5454606/93‑1 (MQ=21)
aGTGAACAAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACg < 2:2067492/93‑1 (MQ=255)
gTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGc > 2:2630515/1‑93 (MQ=255)
taacccAAAGGGGGCGTGAGGGGGGGTCTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGcc < 2:1451131/89‑1 (MQ=21)
gaacccAAACGGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGcc < 2:3814939/89‑1 (MQ=255)
aaCCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTg > 2:2898088/1‑93 (MQ=255)
aaCCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTg > 2:3443462/1‑93 (MQ=255)
ccAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTa > 2:124541/1‑93 (MQ=255)
ccAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGCAAGGAATGCGCCCAGCCAGCCGAGACACGGTGAGAAGAACGAGCACATCACGCCTGTa > 1:1810166/1‑93 (MQ=25)
cAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGGATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTAc > 2:2540602/1‑93 (MQ=255)
cAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTAc > 1:4662038/1‑93 (MQ=255)
aaaaAGGGTGTTAGGGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTAcc < 1:1958748/93‑1 (MQ=25)
aaCAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCt > 2:87799/1‑93 (MQ=255)
aaCAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCt > 2:6010800/1‑93 (MQ=255)
aGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGcc > 2:1872976/1‑93 (MQ=255)
aGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGcc > 2:84538/1‑93 (MQ=255)
gggtttAGAGGAGGTGTCCGAGCCGTTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAg < 2:2712080/89‑1 (MQ=37)
gTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTAc > 2:3614032/1‑93 (MQ=255)
gTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTAc > 2:5038465/1‑93 (MQ=255)
gaggagGTGCCGGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTAccagc < 2:5394554/93‑1 (MQ=255)
aggaggTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATGACGCCTGTACCTGCCAGTAccagcg > 1:5513416/1‑93 (MQ=255)
aggaggTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTAccagcg > 1:4464902/1‑93 (MQ=255)
ggaggTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTAccagcgc > 1:2752082/1‑93 (MQ=255)
gaggTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTAccagcgcc > 2:6222839/1‑93 (MQ=255)
gaggTACCCGACCCGTTAAGAAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAAAACATCACGCCTGTACCTGCCAGTAccagcgcc < 1:3803865/93‑1 (MQ=255)
aggTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTAccagcgcca > 2:3359855/1‑93 (MQ=255)
ggTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTAccagcgccag > 1:3610822/1‑93 (MQ=255)
gcccGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCgt < 2:5235195/91‑1 (MQ=255)
gcggAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCgtg < 2:4475702/90‑1 (MQ=255)
cGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCgtggt < 1:4498722/93‑1 (MQ=255)
cGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCgtggt < 2:657629/93‑1 (MQ=255)
cGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCgtggt < 1:6149973/93‑1 (MQ=255)
gAGCGGGAAAGGAAGGCGCCCAGCCGGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCgtggtg < 2:2399610/93‑1 (MQ=255)
gAGCCGGTAAGGAATCCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTCCCTGCCAGTACCAGCGCCAGCgtggtg < 2:4213903/93‑1 (MQ=255)
gAGCCGGTAAGAAATCCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCgtggtg < 1:3579091/93‑1 (MQ=255)
cgggTAAGGAATGCGCACGGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGAc < 1:743423/91‑1 (MQ=255)
cGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGACCGAGAACATCACGCTTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACa < 2:5914295/93‑1 (MQ=255)
cGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCGGCGCCAGCGTGGTGGACa > 1:5908432/1‑93 (MQ=255)
cGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACa > 2:2813028/1‑93 (MQ=255)
aGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCa > 2:3707345/1‑93 (MQ=255)
aGGAAGCCGCCCAGCCAGCCAAGAAACGGTGAGAAGAACGAGACCATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCa < 2:1503600/93‑1 (MQ=255)
ggAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAg > 2:4701764/1‑93 (MQ=255)
gAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGa > 1:5409170/1‑93 (MQ=255)
|
GCAGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGAA > NC_000913/3117819‑3118000
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCAGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGAATAGT > NC_000913/3117819‑3118004
|
GCAGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGC < SRR4302547.3724144/94‑1 (MQ=60)
GCAGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGC > SRR4302547.2799964/1‑94 (MQ=60)
GCAGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGC > SRR4302547.1960041/1‑94 (MQ=60)
CAGGGTGTAAGAGACGTTGTTTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCG < SRR4302547.6253598/94‑1 (MQ=60)
AGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGC > SRR4302547.3579617/1‑94 (MQ=60)
AGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGC > SRR4302547.5580512/1‑94 (MQ=60)
AGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGC > SRR4302547.237020/1‑94 (MQ=60)
AGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGC > SRR4302547.5445572/1‑94 (MQ=60)
AGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGC > SRR4302547.49374/1‑94 (MQ=60)
GGGTGTCAGAGACGTTGATTTGCTGCGCGGTGTTCGATGGCAGTGAACCAAACAGGGGGTTAGAGGGGGTGTCGGAGCCGGTAAGGAATACGCC < SRR4302547.6127275/94‑1 (MQ=60)
GGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCC > SRR4302547.6420953/1‑94 (MQ=60)
GGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCC < SRR4302547.5167476/94‑1 (MQ=60)
TGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAG < SRR4302547.1074679/94‑1 (MQ=60)
TGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAG < SRR4302547.3262523/94‑1 (MQ=60)
TGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAG < SRR4302547.605996/94‑1 (MQ=60)
GTCAGAGACGTTGATTTGCTGCGCCATGATCGATTGCAGTGAACCAAACGGGGCGTTGGAGGAGGTGTCGGAGCCGGTAAGGAATGCGCCCAGC < SRR4302547.2205728/94‑1 (MQ=60)
AGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAG > SRR4302547.1985365/1‑94 (MQ=60)
AGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAG > SRR4302547.6458251/1‑94 (MQ=60)
AGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAG > SRR4302547.4675826/1‑94 (MQ=60)
AGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAC > SRR4302547.5214797/1‑94 (MQ=60)
AGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCC > SRR4302547.6379524/1‑94 (MQ=60)
ACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGA > SRR4302547.4943313/1‑94 (MQ=60)
ACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGA > SRR4302547.3337073/1‑94 (MQ=60)
CTTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAG < SRR4302547.1269630/94‑1 (MQ=60)
CGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAG > SRR4302547.1389474/1‑94 (MQ=60)
CGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAG > SRR4302547.4786899/1‑94 (MQ=60)
GTTGATTTGCTGCGCGGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGA < SRR4302547.3898047/94‑1 (MQ=60)
TTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAA > SRR4302547.5526463/1‑94 (MQ=60)
ttttttcctcCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGGGGACGTTTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAA < SRR4302547.1120802/84‑1 (MQ=60)
TATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAAC < SRR4302547.6229220/94‑1 (MQ=60)
GATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAAC < SRR4302547.803541/94‑1 (MQ=60)
attgcCTGCGCCGTGGTCGATTGCAGTGACCAAAACAGGGCTTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACG < SRR4302547.2798408/89‑1 (MQ=60)
TTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGG > SRR4302547.974569/1‑94 (MQ=60)
TTCCTGCGCAGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGT < SRR4302547.4257200/94‑1 (MQ=60)
TGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTG > SRR4302547.287383/1‑94 (MQ=60)
TGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTG > SRR4302547.875170/1‑94 (MQ=60)
CTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAG > SRR4302547.4916750/1‑94 (MQ=60)
CTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAG > SRR4302547.4561943/1‑94 (MQ=60)
ccccgtgttcgtttgaattaacCCAAACGGGGCTTTAGAGGAGGTGCCGGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAATGGTGAGAAG < SRR4302547.6593230/72‑1 (MQ=48)
CGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAG < SRR4302547.4420352/94‑1 (MQ=60)
CGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAG > SRR4302547.2516948/1‑94 (MQ=60)
CGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAAAGGTGAGAAG < SRR4302547.6593234/94‑1 (MQ=60)
GCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGA > SRR4302547.5537828/1‑94 (MQ=60)
GCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGA > SRR4302547.4089559/1‑94 (MQ=60)
GCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTAAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGA < SRR4302547.2443279/94‑1 (MQ=60)
CCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAA > SRR4302547.6383350/1‑94 (MQ=60)
CCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAA > SRR4302547.4222535/1‑94 (MQ=60)
CGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAAC > SRR4302547.839688/1‑94 (MQ=60)
GTGGTCGTTTGCATTGACCCAAACGGGGCGTAAGAGGGGTCGGCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACG < SRR4302547.4878954/94‑1 (MQ=46)
GTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACG > SRR4302547.5442077/1‑94 (MQ=60)
TGGTGGATTGCAGTGACCAAAACAGGGCGTGAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGA < SRR4302547.930434/94‑1 (MQ=60)
TGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGG > SRR4302547.1159076/1‑94 (MQ=60)
gtgCGATTGCAGTGAACCAAACGGGGCATAAGGGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGG < SRR4302547.2433084/91‑1 (MQ=60)
GGTCGATTGCAGTGAACCAAACGGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGG < SRR4302547.4681928/94‑1 (MQ=60)
GGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAG > SRR4302547.990614/1‑94 (MQ=60)
GGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAG > SRR4302547.3612811/1‑94 (MQ=60)
GTGGATTGCAGAGACCAAAACAGGGCGTGAGAGGAGGGGCCGGAGCGGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGA < SRR4302547.4169469/94‑1 (MQ=42)
GTCGATTGCAGTGACCAAAACAGGGCGTTAGAGGAGGTGCCGGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGA < SRR4302547.3670756/94‑1 (MQ=60)
CGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAAC > SRR4302547.987476/1‑94 (MQ=60)
CGATTGCAGTGAACAAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGTTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAAC < SRR4302547.5453413/94‑1 (MQ=60)
GATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACA > SRR4302547.4283700/1‑94 (MQ=60)
GATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACA > SRR4302547.1705176/1‑94 (MQ=60)
GATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACA > SRR4302547.1939831/1‑94 (MQ=60)
ATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACAT > SRR4302547.2428527/1‑94 (MQ=60)
ATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACAT > SRR4302547.5300524/1‑94 (MQ=60)
ttgcaggaacccaccCAGGGCGTAAGAGGAGGTGCCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATC < SRR4302547.6072014/79‑1 (MQ=60)
TTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATC > SRR4302547.3160204/1‑94 (MQ=60)
TTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATC > SRR4302547.1938108/1‑94 (MQ=60)
TGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCA > SRR4302547.614701/1‑94 (MQ=60)
GCAGTGAACAAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCAC < SRR4302547.207086/94‑1 (MQ=60)
CAGTGACCAAAACGGGCCGTTAGAGGAGGTGCCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACG < SRR4302547.6537033/94‑1 (MQ=60)
CAGTGACCAAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACG < SRR4302547.5567313/94‑1 (MQ=60)
AGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGC > SRR4302547.2562352/1‑94 (MQ=60)
GTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCC > SRR4302547.4599321/1‑94 (MQ=60)
acaaaagggggcgttggtgggggggtcgGAGCCGGTAGGGAAGGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTA < SRR4302547.1997232/66‑1 (MQ=60)
ACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGCAAGGAATGCGCCCAGCCAGCCGAGACACGGTGAGAAGAACGAGCACATCACGCCTGTA > SRR4302547.1845931/1‑94 (MQ=60)
CCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTAC > SRR4302547.4758590/1‑94 (MQ=60)
aagcgggggttaagagggggtggcgGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCT < SRR4302547.5616246/69‑1 (MQ=60)
aaacggggtttaagaggggttgccgGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCT < SRR4302547.1528975/69‑1 (MQ=60)
AAAAAGGGTGTTAGGGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCT < SRR4302547.1997633/94‑1 (MQ=60)
acaAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTG < SRR4302547.3393957/91‑1 (MQ=60)
AACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTG > SRR4302547.5265925/1‑94 (MQ=60)
AACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTG > SRR4302547.5099782/1‑94 (MQ=60)
ACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGC > SRR4302547.5970686/1‑94 (MQ=60)
AGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCA > SRR4302547.5556118/1‑94 (MQ=60)
AGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACAGCACGCCTGTACCTGCCA > SRR4302547.3796032/1‑94 (MQ=60)
GGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAG > SRR4302547.3167110/1‑94 (MQ=60)
CGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTAC > SRR4302547.111017/1‑94 (MQ=60)
tagaggggcgcccgGAGCCGGTAAGGAACGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAG < SRR4302547.5144454/80‑1 (MQ=60)
GAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATGACGCCTGTACCTGCCAGTACCAGCG > SRR4302547.5627236/1‑94 (MQ=60)
GAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCG > SRR4302547.1470319/1‑94 (MQ=60)
GAGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCG > SRR4302547.4557154/1‑94 (MQ=60)
ggggggtggCCGAGCGGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGC < SRR4302547.1930185/85‑1 (MQ=60)
AGGAGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGC > SRR4302547.2807263/1‑94 (MQ=60)
gggtggccgGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCA < SRR4302547.3050353/85‑1 (MQ=60)
AGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAG > SRR4302547.6496437/1‑94 (MQ=60)
AGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAG > SRR4302547.3684475/1‑94 (MQ=60)
AGGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAG > SRR4302547.4424387/1‑94 (MQ=60)
GGTGTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGC > SRR4302547.3019379/1‑94 (MQ=60)
GTCCGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTG > SRR4302547.1986071/1‑94 (MQ=60)
CGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTG < SRR4302547.6277567/94‑1 (MQ=60)
CGAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTG < SRR4302547.4591648/94‑1 (MQ=60)
CGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTG < SRR4302547.4183310/94‑1 (MQ=60)
GAGCCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGG > SRR4302547.671599/1‑94 (MQ=60)
GAGCCGGTAAGAAATCCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGG < SRR4302547.3652098/94‑1 (MQ=60)
CGGGTAAGGAATGCGCACGGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACA < SRR4302547.757415/94‑1 (MQ=60)
CCGGTAAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCGGCGCCAGCGTGGTGGACA > SRR4302547.6030789/1‑94 (MQ=60)
CGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACAT < SRR4302547.3980547/94‑1 (MQ=60)
AAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCA > SRR4302547.4314169/1‑94 (MQ=60)
AAGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCA > SRR4302547.2847657/1‑94 (MQ=60)
AGGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAG > SRR4302547.6377772/1‑94 (MQ=60)
GGAATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGA > SRR4302547.5521009/1‑94 (MQ=60)
GAATCCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGAA < SRR4302547.3269670/94‑1 (MQ=60)
GAATCCCCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCCCGCCTGTCCCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGAA < SRR4302547.1718009/94‑1 (MQ=60)
ATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGAATA > SRR4302547.2282089/1‑94 (MQ=60)
ATGCGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCACCGTGGTGGACATGCCAGAATA < SRR4302547.6532006/94‑1 (MQ=60)
GCGCCCAGCCAGCCGAGAAACGGTGAGAAGGACGAGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGAATAGT > SRR4302547.932828/1‑94 (MQ=60)
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GCAGGGTGTCAGAGACGTTGATTTGCTGCGCCGTGGTCGATTGCAGTGAACCAAACAGGGCGTTAGAGGAGGTGTCCGAGCCGGTAAGGAATACGCCCAGCCAGCCGAGAAACGGTGAGAAGAACGGGAACATCACGCCTGTACCTGCCAGTACCAGCGCCAGCGTGGTGGACATGCCAGAATAGT > NC_000913/3117819‑3118004
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
