Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,166,935 2 bp→CG coding (312‑313/483 nt) b3023 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,166,9350GC100.0% 947.2 / NA 260L105V (CTT→GTT) b3023hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (133/127);  total (133/127)
*NC_0009133,166,9360CG100.0% 953.6 / NA 260Q104H (CAG→CAC) b3023hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (133/127);  total (133/127)

Only 100 of 264 total aligned reads displayed.

GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCC  >  NC_000913/3166848‑3167022
                                                                                       ||                                                                                      
  gCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCgg                                                                                  >  2:5109468/1‑93 (MQ=255)
  gCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCgg                                                                                  <  2:1133808/93‑1 (MQ=255)
   cTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCggg                                                                                 <  1:6046836/93‑1 (MQ=255)
    tttACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGCAATATCGTCCAGCTCGCCAACGtggctggc                                                                                >  1:218141/1‑93 (MQ=255)
    tttACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGc                                                                                <  1:5256681/93‑1 (MQ=255)
     ttACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGcc                                                                               <  1:3091035/93‑1 (MQ=255)
      tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCggggcc                                                                              >  2:4438450/1‑90 (MQ=255)
      tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCa                                                                              >  2:5058258/1‑93 (MQ=255)
      tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCa                                                                              <  1:1648905/93‑1 (MQ=255)
      tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCa                                                                              <  1:6420129/93‑1 (MQ=255)
       aCGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCAc                                                                             <  2:2381507/93‑1 (MQ=255)
       aCGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCAc                                                                             <  1:3303344/93‑1 (MQ=255)
        cGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACg                                                                            >  2:1204974/1‑93 (MQ=255)
        cGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACg                                                                            >  2:4778567/1‑93 (MQ=255)
           aTTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCa                                                                         >  2:4050105/1‑93 (MQ=255)
               tctcCCCGCTTGCAGCCAGCCAGTGGCTAATGATGCCCCATTCCGTGGGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAc                                                                     <  2:2108409/93‑1 (MQ=255)
                ctcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAGTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACg                                                                    <  1:4953418/93‑1 (MQ=255)
                ctcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACg                                                                    <  2:5328748/93‑1 (MQ=255)
                 tcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGt                                                                   <  1:1855940/93‑1 (MQ=255)
                 tcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGt                                                                   >  1:3821081/1‑93 (MQ=255)
                  cgccgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTc                                                                  >  1:3937274/1‑93 (MQ=255)
                     ctcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAc                                                               <  1:5131692/91‑1 (MQ=255)
                     cgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAc                                                               <  1:204163/93‑1 (MQ=255)
                     cgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAc                                                               <  2:4954826/93‑1 (MQ=255)
                     cgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAc                                                               <  1:4284895/93‑1 (MQ=255)
                      gcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAcc                                                              <  2:5196192/93‑1 (MQ=255)
                       cTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCg                                                             >  2:1467359/1‑93 (MQ=255)
                       cTTGCAGGCAGCCAGTGGCGAATGATGCACCATCCCGAGAGTGAAATATCGTCCAGCTCGCCAACGTAACGGGCCACGGCATAACGTCCACCg                                                             <  1:6640696/93‑1 (MQ=255)
                        ttGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCgg                                                            >  2:204568/1‑93 (MQ=255)
                        ttGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCgg                                                            <  1:137873/93‑1 (MQ=255)
                        ttGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCgg                                                            >  1:3692489/1‑93 (MQ=255)
                          gcaggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTa                                                          <  2:4533189/93‑1 (MQ=255)
                           caggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTaa                                                         <  2:5530887/93‑1 (MQ=255)
                            aggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAg                                                        <  2:2907507/93‑1 (MQ=255)
                            aggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAg                                                        <  2:5281841/93‑1 (MQ=255)
                               cagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTc                                                     >  2:2599259/1‑93 (MQ=255)
                               cagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTc                                                     <  1:6075078/93‑1 (MQ=255)
                                agCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCa                                                    >  1:2495101/1‑93 (MQ=255)
                                 gCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAc                                                   <  2:3112374/93‑1 (MQ=255)
                                 gCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAc                                                   <  2:602727/93‑1 (MQ=255)
                                  ccAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAcc                                                  >  1:265515/1‑93 (MQ=255)
                                  ccAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAcc                                                  <  2:2365421/93‑1 (MQ=255)
                                   cAGTGGCGAATGATGCACCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCa                                                 <  1:907782/93‑1 (MQ=255)
                                     gTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCAtt                                               >  1:497518/1‑93 (MQ=255)
                                       ggCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGc                                             >  2:3293993/1‑93 (MQ=255)
                                       ggCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGc                                             >  1:1699036/1‑93 (MQ=255)
                                         cGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTc                                           <  1:6206701/93‑1 (MQ=255)
                                          gAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAAGTCCACCGGGAAGGTCACCATTGCTca                                          >  2:178281/1‑93 (MQ=255)
                                           aaTGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTcac                                         <  1:338570/93‑1 (MQ=255)
                                             tgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCacac                                       <  2:3002994/93‑1 (MQ=255)
                                              gatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACAcc                                      <  2:333311/93‑1 (MQ=255)
                                                tgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCAt                                    >  1:2421256/1‑93 (MQ=255)
                                                tgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCAt                                    >  1:6334054/1‑93 (MQ=255)
                                                 gCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATa                                   >  1:1960985/1‑93 (MQ=255)
                                                  ccccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATaa                                  >  1:4023572/1‑93 (MQ=255)
                                                   cccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCTGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAc                                 >  2:3565024/1‑93 (MQ=255)
                                                    ccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACg                                >  1:4682107/1‑93 (MQ=255)
                                                     cATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGa                               >  1:2824065/1‑93 (MQ=255)
                                                     cATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGa                               >  2:4322466/1‑93 (MQ=255)
                                                      aTACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAt                              >  1:2246648/1‑93 (MQ=255)
                                                       tACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAtt                             >  2:5664320/1‑93 (MQ=255)
                                                       tACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAtt                             <  2:383597/93‑1 (MQ=255)
                                                        aCCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTa                            <  1:1599328/93‑1 (MQ=255)
                                                         ccGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAt                           >  2:191054/1‑93 (MQ=255)
                                                         ccGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAt                           >  1:5625706/1‑93 (MQ=255)
                                                          cGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATc                          >  2:3437443/1‑93 (MQ=255)
                                                          cGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATc                          >  1:836525/1‑93 (MQ=255)
                                                           gtgtgtGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCg                         >  1:3664471/1‑93 (MQ=255)
                                                           gtgtgtGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCg                         <  1:4495330/93‑1 (MQ=255)
                                                            tgtgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCgg                        <  2:4699111/93‑1 (MQ=255)
                                                             gtgtgAAATATGGTCCAGCTCGCCAACGTGGCGGGCCACTGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCggg                       <  1:55480/93‑1 (MQ=255)
                                                              tgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGa                      >  1:5447866/1‑93 (MQ=255)
                                                                tgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAAt                    <  2:2749554/93‑1 (MQ=255)
                                                                tgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAAt                    <  2:6651124/93‑1 (MQ=255)
                                                                tgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAAt                    <  2:620703/93‑1 (MQ=255)
                                                                tgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAAt                    <  1:6517217/93‑1 (MQ=255)
                                                                 gAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATc                   <  1:5933543/93‑1 (MQ=255)
                                                                 gAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATc                   <  1:5880625/93‑1 (MQ=255)
                                                                  aaaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCg                  >  2:2780691/1‑93 (MQ=255)
                                                                  aaaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCg                  <  2:1755600/93‑1 (MQ=255)
                                                                   aaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACTATAACGATTATCGGGAATCgg                 <  2:5474856/93‑1 (MQ=255)
                                                                     tatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGtt               <  1:2891445/93‑1 (MQ=255)
                                                                     tatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGtt               >  2:1502847/1‑93 (MQ=255)
                                                                     tatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGtt               <  2:3645541/93‑1 (MQ=255)
                                                                      atCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc              <  1:3445526/93‑1 (MQ=255)
                                                                      atCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc              <  2:4217543/93‑1 (MQ=255)
                                                                       tCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCg             <  2:4451174/93‑1 (MQ=255)
                                                                         gTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCt           <  1:2366823/93‑1 (MQ=255)
                                                                          tCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTa          <  2:1321032/93‑1 (MQ=255)
                                                                          tCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTa          >  1:3869037/1‑93 (MQ=255)
                                                                           ccAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTAACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTaa         <  2:5774869/93‑1 (MQ=255)
                                                                            cAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAc        <  2:5739493/93‑1 (MQ=255)
                                                                            cAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAc        <  2:199019/93‑1 (MQ=255)
                                                                            cAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAc        <  1:2459789/93‑1 (MQ=255)
                                                                            cAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAc        <  1:974272/93‑1 (MQ=255)
                                                                             aGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACg       >  2:4069245/1‑93 (MQ=255)
                                                                              gCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGc      >  2:4358999/1‑93 (MQ=255)
                                                                                tCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTg    <  1:5054582/93‑1 (MQ=255)
                                                                                 cGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGc   <  1:3194933/93‑1 (MQ=255)
                                                                                  gCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGcc  >  2:6241031/1‑93 (MQ=255)
                                                                                       ||                                                                                      
GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCC  >  NC_000913/3166848‑3167022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAATCGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑GCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCGC  >  NC_000913/3166842‑3167024
                                                                                                 |                                                                                         
GAATCGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑C                                                                                           >  SRR4302547.2885204/1‑94 (MQ=60)
     GGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGC                                                                                      >  SRR4302547.6177617/1‑94 (MQ=60)
      GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCG                                                                                     <  SRR4302547.1623781/94‑1 (MQ=60)
      GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCG                                                                                     <  SRR4302547.3235224/94‑1 (MQ=60)
      GTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATACCGTCCAGCTCGCCAA‑‑‑‑CGTGGCG                                                                                     <  SRR4302547.4310604/94‑1 (MQ=60)
       TGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGG                                                                                    <  SRR4302547.6154160/94‑1 (MQ=60)
         CTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGCAATATCGTCCAGCTCGCCAACGTGGCTGGC                                                                                      >  SRR4302547.222249/1‑94 (MQ=60)
         CTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGC                                                                                  <  SRR4302547.6172293/94‑1 (MQ=60)
          TTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCC                                                                                 <  SRR4302547.5364915/94‑1 (MQ=60)
           TTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCA                                                                                >  SRR4302547.289385/1‑94 (MQ=60)
           TTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCA                                                                                <  SRR4302547.3152333/94‑1 (MQ=60)
            TACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCAC                                                                               <  SRR4302547.1681458/94‑1 (MQ=60)
            TACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCAC                                                                               <  SRR4302547.6553971/94‑1 (MQ=60)
            TACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCCTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCAC                                                                               >  SRR4302547.1547480/1‑94 (MQ=60)
             ACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACG                                                                              <  SRR4302547.3369858/94‑1 (MQ=60)
              CGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGG                                                                             <  SRR4302547.3995372/94‑1 (MQ=60)
               GCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGC                                                                            <  SRR4302547.5736770/94‑1 (MQ=60)
                CATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACCGCA                                                                           >  SRR4302547.6061206/1‑94 (MQ=60)
                  TTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATA                                                                         >  SRR4302547.5066702/1‑94 (MQ=60)
                   TTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGacaaa                                                                        >  SRR4302547.3064990/1‑89 (MQ=60)
                   TTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAA                                                                        >  SRR4302547.635621/1‑94 (MQ=60)
                   TTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAA                                                                        <  SRR4302547.248725/94‑1 (MQ=60)
                      CTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAGTATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGT                                                                     <  SRR4302547.5055960/94‑1 (MQ=60)
                      CTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGT                                                                     >  SRR4302547.6182699/1‑94 (MQ=60)
                      CTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGT                                                                     >  SRR4302547.3898939/1‑94 (MQ=60)
                       TCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTC                                                                    <  SRR4302547.1892604/94‑1 (MQ=60)
                       TCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTC                                                                    >  SRR4302547.4017335/1‑94 (MQ=60)
                       TCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTC                                                                    >  SRR4302547.3442797/1‑94 (MQ=60)
                        CGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCC                                                                   >  SRR4302547.6451970/1‑94 (MQ=60)
                        CGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCC                                                                   <  SRR4302547.1786376/94‑1 (MQ=60)
                         GCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCA                                                                  >  SRR4302547.401357/1‑94 (MQ=60)
                         GCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCA                                                                  >  SRR4302547.882088/1‑94 (MQ=60)
                         GCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCA                                                                  <  SRR4302547.5495486/94‑1 (MQ=60)
                         GCCGCTTGCAGGCAGCCAGCGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCCTAACGTCCA                                                                  >  SRR4302547.2025892/1‑94 (MQ=60)
                          CCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACCGCATTACGTCCAC                                                                 >  SRR4302547.3899180/1‑94 (MQ=60)
                           CTCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACC                                                                <  SRR4302547.5237422/94‑1 (MQ=60)
                           CGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACC                                                                <  SRR4302547.207982/94‑1 (MQ=60)
                           CGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACC                                                                >  SRR4302547.2142652/1‑94 (MQ=60)
                           CGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACC                                                                <  SRR4302547.4372946/94‑1 (MQ=60)
                            GCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCG                                                               >  SRR4302547.3761472/1‑94 (MQ=60)
                            GCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCG                                                               <  SRR4302547.4346597/94‑1 (MQ=60)
                             CTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGG                                                              <  SRR4302547.2352493/94‑1 (MQ=60)
                             CTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGG                                                              >  SRR4302547.1951390/1‑94 (MQ=60)
                             CTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGG                                                              >  SRR4302547.3767874/1‑94 (MQ=60)
                             CTTGCAGGCAGCCAGTGGCGAATGATGCACCATCCCGAGAGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTAACGGGCCACGGCATAACGTCCACCGG                                                              <  SRR4302547.6778922/94‑1 (MQ=60)
                              TTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGT                                                             >  SRR4302547.167405/1‑94 (MQ=60)
                              TTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGT                                                             <  SRR4302547.140364/94‑1 (MQ=60)
                               TGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTA                                                            >  SRR4302547.3765662/1‑94 (MQ=60)
                                GCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAA                                                           <  SRR4302547.2280380/94‑1 (MQ=60)
                                 CAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCAACGGTAAG                                                          >  SRR4302547.776680/1‑94 (MQ=60)
                                  AGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGT                                                         >  SRR4302547.6305082/1‑94 (MQ=60)
                                  AGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGT                                                         >  SRR4302547.4897655/1‑94 (MQ=60)
                                     CAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCA                                                      <  SRR4302547.5136480/94‑1 (MQ=60)
                                     CAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCA                                                      >  SRR4302547.2545511/1‑94 (MQ=60)
                                     CAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCA                                                      <  SRR4302547.6201100/94‑1 (MQ=60)
                                      AGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAC                                                     >  SRR4302547.2489479/1‑94 (MQ=60)
                                       GCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACC                                                    >  SRR4302547.270481/1‑94 (MQ=60)
                                       GCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACC                                                    <  SRR4302547.2619649/94‑1 (MQ=60)
                                       GCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACC                                                    >  SRR4302547.5911576/1‑94 (MQ=60)
                                         CAGTGGCGAATGATGCACCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCAT                                                  <  SRR4302547.925280/94‑1 (MQ=60)
                                          AGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATT                                                 >  SRR4302547.506587/1‑94 (MQ=60)
                                           GTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTG                                                <  SRR4302547.2248712/94‑1 (MQ=60)
                                            TGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGC                                               >  SRR4302547.4296008/1‑94 (MQ=60)
                                            TGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGC                                               >  SRR4302547.1732434/1‑94 (MQ=60)
                                               CGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCA                                            <  SRR4302547.6335565/94‑1 (MQ=60)
                                                 AATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACA                                          <  SRR4302547.344864/94‑1 (MQ=60)
                                                 AATGATGCCACATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACA                                          <  SRR4302547.6749331/94‑1 (MQ=60)
                                                   TGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACC                                        >  SRR4302547.2513046/1‑94 (MQ=60)
                                                     ATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCAT                                      >  SRR4302547.3809704/1‑94 (MQ=60)
                                                     ATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCAT                                      >  SRR4302547.6465941/1‑94 (MQ=60)
                                                     ATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCAT                                      >  SRR4302547.2470267/1‑94 (MQ=60)
                                                     ATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCAT                                      <  SRR4302547.324765/94‑1 (MQ=60)
                                                      TGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATA                                     >  SRR4302547.1999918/1‑94 (MQ=60)
                                                       GCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAA                                    >  SRR4302547.4105318/1‑94 (MQ=60)
                                                        CCCCATACCGTGTGTGAAATATCGTCCAGCTCGCTAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAC                                   <  SRR4302547.4476303/94‑1 (MQ=60)
                                                        CCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAC                                   >  SRR4302547.3491536/1‑94 (MQ=60)
                                                        CCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAAC                                   >  SRR4302547.4738012/1‑94 (MQ=60)
                                                         CCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACG                                  >  SRR4302547.4779092/1‑94 (MQ=60)
                                                          CCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGA                                 >  SRR4302547.2880551/1‑94 (MQ=60)
                                                           CATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAT                                >  SRR4302547.2291984/1‑94 (MQ=60)
                                                           CATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAT                                <  SRR4302547.5602536/94‑1 (MQ=60)
                                                            ATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGGAAGTTCACCATTGCTCACACCATAACGATT                               >  SRR4302547.3334217/1‑94 (MQ=60)
                                                             TACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTA                              <  SRR4302547.221118/94‑1 (MQ=60)
                                                              ACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAT                             <  SRR4302547.1631059/94‑1 (MQ=60)
                                                              ACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAT                             >  SRR4302547.5741803/1‑94 (MQ=60)
                                                               CCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATC                            >  SRR4302547.852496/1‑94 (MQ=60)
                                                               CCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATC                            <  SRR4302547.555273/94‑1 (MQ=60)
                                                                CGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCG                           >  SRR4302547.1950278/1‑94 (MQ=60)
                                                                CGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCG                           >  SRR4302547.3739223/1‑94 (MQ=60)
                                                                 GTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGG                          <  SRR4302547.4588173/94‑1 (MQ=60)
                                                                 GTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGG                          <  SRR4302547.3944020/94‑1 (MQ=60)
                                                                  TGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGG                         <  SRR4302547.6091517/94‑1 (MQ=60)
                                                                   GTGTGAAATATGGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACTGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGA                        <  SRR4302547.56525/94‑1 (MQ=60)
                                                                   GTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGA                        >  SRR4302547.5560440/1‑94 (MQ=60)
                                                                    TGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAA                       >  SRR4302547.2450381/1‑94 (MQ=60)
                                                                     GTGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACAGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAAT                      <  SRR4302547.2447753/94‑1 (MQ=60)
                                                                      TGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATC                     <  SRR4302547.6652904/94‑1 (MQ=60)
                                                                      TGAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATC                     >  SRR4302547.5285845/1‑94 (MQ=60)
                                                                       GAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCG                    <  SRR4302547.6056577/94‑1 (MQ=60)
                                                                       GAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCG                    <  SRR4302547.2891496/94‑1 (MQ=60)
                                                                       GAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCG                    <  SRR4302547.3636211/94‑1 (MQ=60)
                                                                       GAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCG                    <  SRR4302547.6002383/94‑1 (MQ=60)
                                                                       GAAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCG                    >  SRR4302547.968267/1‑94 (MQ=60)
                                                                        AAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGG                   >  SRR4302547.5232247/1‑94 (MQ=60)
                                                                        AAATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGG                   <  SRR4302547.6752162/94‑1 (MQ=60)
                                                                         AATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGT                  <  SRR4302547.2681049/94‑1 (MQ=60)
                                                                          ATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTT                 <  SRR4302547.937392/94‑1 (MQ=60)
                                                                          ATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTT                 >  SRR4302547.280562/1‑94 (MQ=60)
                                                                          ATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCCGGAAGTTCACCATTGCTCCCACCATAACGATTATTGGGAATCGGTT                 >  SRR4302547.5877555/1‑94 (MQ=60)
                                                                          ATATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCCGGCCTCAGCATAACGTCCACCGGGAAGTCCTCCATTGCTCACACCATAACGATTATacggcatccgtt                 >  SRR4302547.3404098/1‑82 (MQ=43)
                                                                           TATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTC                <  SRR4302547.1647620/94‑1 (MQ=60)
                                                                           TATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTC                >  SRR4302547.6560011/1‑94 (MQ=60)
                                                                           TATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTC                <  SRR4302547.2949115/94‑1 (MQ=60)
                                                                           TATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTC                <  SRR4302547.3655671/94‑1 (MQ=60)
                                                                           TATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTC                <  SRR4302547.1780386/94‑1 (MQ=60)
                                                                           TATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTC                <  SRR4302547.3991266/94‑1 (MQ=60)
                                                                           TATCGTCCAGCTCACCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGCGAATCGGTTC                >  SRR4302547.5095473/1‑94 (MQ=60)
                                                                            ATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCG               <  SRR4302547.3515768/94‑1 (MQ=60)
                                                                            ATCGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCG               <  SRR4302547.516007/94‑1 (MQ=60)
                                                                              CGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCT             <  SRR4302547.6003260/94‑1 (MQ=60)
                                                                              CGTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCT             >  SRR4302547.844122/1‑94 (MQ=60)
                                                                               GTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTA            >  SRR4302547.3947801/1‑94 (MQ=60)
                                                                               GTCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTA            <  SRR4302547.2414795/94‑1 (MQ=60)
                                                                                TCCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAA           <  SRR4302547.3357056/94‑1 (MQ=60)
                                                                                 CCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAC          >  SRR4302547.4893814/1‑94 (MQ=60)
                                                                                 CCAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAC          >  SRR4302547.3140815/1‑94 (MQ=60)
                                                                                  CAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACG         <  SRR4302547.993211/94‑1 (MQ=60)
                                                                                  CAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACG         <  SRR4302547.5484891/94‑1 (MQ=60)
                                                                                  CAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACG         <  SRR4302547.2509499/94‑1 (MQ=60)
                                                                                  CAGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACG         <  SRR4302547.3057036/94‑1 (MQ=60)
                                                                                   AGCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGC        >  SRR4302547.1710624/1‑94 (MQ=60)
                                                                                    GCTCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCT       <  SRR4302547.4768214/94‑1 (MQ=60)
                                                                                      TCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGC     >  SRR4302547.6518973/1‑94 (MQ=60)
                                                                                      TCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGC     <  SRR4302547.5158923/94‑1 (MQ=60)
                                                                                      TCGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAAAGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCCGC     >  SRR4302547.6475983/1‑94 (MQ=60)
                                                                                       CGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCC    <  SRR4302547.3258596/94‑1 (MQ=60)
                                                                                       CGCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCC    >  SRR4302547.2840206/1‑94 (MQ=60)
                                                                                        GCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCG   >  SRR4302547.2311363/1‑94 (MQ=60)
                                                                                        GCCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCAG   >  SRR4302547.1798199/1‑94 (MQ=60)
                                                                                         CCAA‑‑‑‑CGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCGC  >  SRR4302547.4503868/1‑94 (MQ=60)
                                                                                                 |                                                                                         
GAATCGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAA‑‑‑‑GCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCGC  >  NC_000913/3166842‑3167024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑