Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,249,311 |
G→A |
S216S (TCG→TCA) |
yqjG → |
putative transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,249,311 | 0 | G | A | 84.4%
| 706.3
/ 96.7
| 262 | S216S (TCG→TCA) | yqjG | putative transferase |
| Reads supporting (aligned to +/- strand): ref base G (22/19); new base A (108/113); total (130/132) |
| Fisher's exact test for biased strand distribution p-value = 6.13e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 |
Only 100 of 262 total aligned reads displayed.
TTTATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCT > NC_000913/3249220‑3249400
|
ttATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACt > 2:2466524/1‑93 (MQ=255)
aTGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTgg > 2:1726135/1‑93 (MQ=255)
tGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGc > 1:4402013/1‑93 (MQ=255)
gACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCa > 1:2209602/1‑93 (MQ=255)
acacCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCAc > 1:4028029/1‑93 (MQ=255)
acacCGATAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCAc < 2:2111985/93‑1 (MQ=255)
cacCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACg > 1:1743653/1‑93 (MQ=255)
cacCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACg < 1:4317503/93‑1 (MQ=255)
acCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGa > 2:2252176/1‑93 (MQ=255)
acCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGa > 2:5350692/1‑93 (MQ=255)
ccGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGAc < 2:4956427/93‑1 (MQ=255)
cGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACt > 1:4514513/1‑93 (MQ=255)
gTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTg > 1:4214468/1‑93 (MQ=255)
ttAACAACGGCGTGTATAAAGCTGGTTTTGCCCCCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTgg < 2:2009943/93‑1 (MQ=255)
ttAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTgg > 1:4592514/1‑93 (MQ=255)
tAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGa < 1:1472184/93‑1 (MQ=255)
aacaacGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAg > 1:372898/1‑93 (MQ=255)
aacaacGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAg < 1:2815868/93‑1 (MQ=255)
caacGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCa > 1:4103382/1‑93 (MQ=255)
caacGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCa > 2:6200571/1‑93 (MQ=255)
aacGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAg < 2:6445067/93‑1 (MQ=255)
acGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGa > 1:5293273/1‑93 (MQ=255)
acGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGa > 1:5829619/1‑93 (MQ=255)
acGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGa > 1:1026358/1‑93 (MQ=255)
cGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGAt > 2:5463938/1‑93 (MQ=255)
ggCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGAtt > 2:3678270/1‑93 (MQ=255)
gCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGAttt > 2:2862355/1‑93 (MQ=255)
gtgtATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTa > 2:2767714/1‑93 (MQ=255)
tgtATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAg > 2:3769458/1‑93 (MQ=255)
ataAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGcc < 1:5245917/93‑1 (MQ=255)
ataAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGcc < 1:3067853/93‑1 (MQ=255)
taAAGCTGTTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCa < 1:855591/93‑1 (MQ=255)
aaGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGc < 2:5987844/93‑1 (MQ=255)
aGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCa > 1:3588659/1‑93 (MQ=255)
aGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCa > 1:2181923/1‑93 (MQ=255)
aGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCa < 2:839254/93‑1 (MQ=255)
aGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCa > 2:529360/1‑93 (MQ=255)
aGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCa < 1:6488216/93‑1 (MQ=255)
gCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCAt > 1:4662655/1‑93 (MQ=255)
gCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCAt > 1:6345517/1‑93 (MQ=255)
cTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATc < 2:1271813/93‑1 (MQ=255)
cTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATc < 2:911948/93‑1 (MQ=255)
tGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCg < 1:1820149/93‑1 (MQ=255)
ggTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGt > 2:5617092/1‑93 (MQ=255)
gTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGtt > 2:1242383/1‑93 (MQ=255)
ttttGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTa > 1:1266318/1‑93 (MQ=255)
tGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCt > 1:3015537/1‑93 (MQ=255)
tGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCt > 1:5390182/1‑93 (MQ=255)
gCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTg < 1:3369410/93‑1 (MQ=255)
caccaGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGAc > 2:4109016/1‑93 (MQ=255)
caccaGCCAGGAAGCTTACGACGAGGCGGTGGCCAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGAc < 1:6194207/93‑1 (MQ=255)
ccagccagGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCg < 1:3767977/93‑1 (MQ=255)
gccagGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCa < 1:2965866/93‑1 (MQ=255)
gccagGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCa > 1:2050387/1‑93 (MQ=255)
gccagGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCa < 1:2684402/93‑1 (MQ=255)
gccagGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCa > 1:3395125/1‑93 (MQ=255)
cagGAAGCTTCCGACGAGGCGGTGGCGCAAGTGTTTGAATCACTGGCACGACTGGAGCAGAGTTTAGGCCAGCATCGTTACCTGACCGGCAAc > 1:3622703/1‑93 (MQ=255)
agGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAAcc > 2:2993179/1‑93 (MQ=255)
agGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAAcc < 2:2355295/93‑1 (MQ=255)
agGAAGCTTACGACGAGGCGGTGGCGAAAGTGGTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAAcc > 1:5508058/1‑93 (MQ=255)
ggAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCa > 1:5167499/1‑93 (MQ=255)
ggAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCa > 1:3938636/1‑93 (MQ=255)
ggAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGAAACCa > 1:3740999/1‑93 (MQ=255)
aaGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGc > 1:4184664/1‑93 (MQ=255)
aGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCt > 1:6570359/1‑93 (MQ=255)
gCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTa < 2:4323299/93‑1 (MQ=255)
gCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTa < 1:4482486/93‑1 (MQ=255)
ttACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAAc < 1:2531882/93‑1 (MQ=255)
ttACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAAc < 1:6094602/93‑1 (MQ=255)
tACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAAcc < 2:1072106/93‑1 (MQ=255)
acgacgAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCg > 2:3247386/1‑93 (MQ=255)
gacgaGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGaa < 1:1555101/93‑1 (MQ=255)
acgaGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAg < 1:1625754/93‑1 (MQ=255)
acgaGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAg > 1:73050/1‑93 (MQ=255)
cgaGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGc < 2:4656943/93‑1 (MQ=255)
cgaGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGc < 1:6522135/93‑1 (MQ=255)
gaGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGcc > 2:1564944/1‑93 (MQ=255)
gaGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGcc > 2:3316768/1‑93 (MQ=255)
aGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCg > 1:3254318/1‑93 (MQ=255)
ggCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGa > 1:5687637/1‑93 (MQ=255)
gCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGat < 2:3521920/93‑1 (MQ=255)
gCGGTGGCGAAAGTGTTTGAACCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGat > 2:656300/1‑93 (MQ=255)
cGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGata > 2:2321370/1‑93 (MQ=255)
ggTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGatat > 2:4807575/1‑93 (MQ=255)
ggTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGatat > 1:5028901/1‑93 (MQ=255)
tGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTc > 2:5898599/1‑93 (MQ=255)
ggCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCg < 1:108426/93‑1 (MQ=255)
ggCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCg < 2:4586268/93‑1 (MQ=255)
cGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGcc < 2:4163969/93‑1 (MQ=255)
gAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCt > 2:1011413/1‑93 (MQ=255)
aaGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCtgc > 1:2749467/1‑92 (MQ=255)
aGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCTtgtg > 2:615312/1‑93 (MQ=255)
gtgtTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTgg > 1:1654820/1‑93 (MQ=255)
gtgtTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTgg > 1:6407545/1‑93 (MQ=255)
tgtTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGa < 2:4085858/93‑1 (MQ=255)
tttGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACt > 2:1448383/1‑93 (MQ=255)
ttGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTa > 1:3150336/1‑93 (MQ=255)
tGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGCCTAc > 1:4992509/1‑93 (MQ=255)
aaTCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGc < 2:257231/93‑1 (MQ=255)
aTCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCt > 1:5445542/1‑93 (MQ=255)
|
TTTATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCT > NC_000913/3249220‑3249400
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTTATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCTGGTG > NC_000913/3249220‑3249404
|
TTTATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACT < SRR4302547.4550641/94‑1 (MQ=60)
TTATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTG > SRR4302547.5105743/1‑94 (MQ=60)
TTATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTG < SRR4302547.1756898/94‑1 (MQ=60)
TTATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTG < SRR4302547.1504747/94‑1 (MQ=60)
tatacCACCGTAAACAGCGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGG < SRR4302547.3642779/89‑1 (MQ=60)
TATGACAGCGTAAACAACGGCTTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGG < SRR4302547.4696907/94‑1 (MQ=60)
TATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGG < SRR4302547.238633/94‑1 (MQ=60)
TATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGG < SRR4302547.4171165/94‑1 (MQ=60)
ATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGC < SRR4302547.6003926/94‑1 (MQ=60)
ATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGC > SRR4302547.4492664/1‑94 (MQ=60)
TGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCA > SRR4302547.2254029/1‑94 (MQ=60)
TGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCA < SRR4302547.3777607/94‑1 (MQ=60)
TGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCA < SRR4302547.1718964/94‑1 (MQ=60)
TGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCA > SRR4302547.1096001/1‑94 (MQ=60)
GACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCAC > SRR4302547.4109862/1‑94 (MQ=60)
GACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCAC < SRR4302547.3061032/94‑1 (MQ=60)
ACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACG > SRR4302547.1778008/1‑94 (MQ=60)
ACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACG > SRR4302547.2396214/1‑94 (MQ=60)
CACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGA < SRR4302547.4406373/94‑1 (MQ=60)
ACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGACAGGGTTTGAATCACTGGCACGAC > SRR4302547.5884272/1‑94 (MQ=60)
CCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACT > SRR4302547.4607788/1‑94 (MQ=60)
CCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACT < SRR4302547.4133500/94‑1 (MQ=60)
CGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTG > SRR4302547.1665883/1‑94 (MQ=60)
CGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTG > SRR4302547.4300484/1‑94 (MQ=60)
GTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGG > SRR4302547.4687546/1‑94 (MQ=60)
TTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGA < SRR4302547.163527/94‑1 (MQ=60)
TTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGA > SRR4302547.669060/1‑94 (MQ=60)
TAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAG < SRR4302547.1501588/94‑1 (MQ=60)
TAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAG > SRR4302547.379808/1‑94 (MQ=60)
AACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGC > SRR4302547.4424767/1‑94 (MQ=60)
AACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGC > SRR4302547.2777938/1‑94 (MQ=60)
AACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGC < SRR4302547.2872189/94‑1 (MQ=60)
AACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGC > SRR4302547.3069643/1‑94 (MQ=60)
ACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCA > SRR4302547.4186804/1‑94 (MQ=60)
AACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGA > SRR4302547.64646/1‑94 (MQ=60)
AACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGA > SRR4302547.5950249/1‑94 (MQ=60)
AACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGA > SRR4302547.1046506/1‑94 (MQ=60)
AACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGA > SRR4302547.527913/1‑94 (MQ=60)
AACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGA > SRR4302547.5382579/1‑94 (MQ=60)
AACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGA > SRR4302547.5402479/1‑94 (MQ=60)
GGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTT > SRR4302547.3823957/1‑94 (MQ=60)
GGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTT < SRR4302547.518890/94‑1 (MQ=60)
GGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTT > SRR4302547.1965512/1‑94 (MQ=60)
GCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTT < SRR4302547.379905/94‑1 (MQ=60)
CGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTA < SRR4302547.1597533/94‑1 (MQ=60)
GTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAG < SRR4302547.519803/94‑1 (MQ=60)
GTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGC > SRR4302547.4221133/1‑94 (MQ=60)
TATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGTCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCC > SRR4302547.2861193/1‑94 (MQ=60)
ATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCA < SRR4302547.3128831/94‑1 (MQ=60)
ATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCA < SRR4302547.5353888/94‑1 (MQ=60)
ATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCA < SRR4302547.2610272/94‑1 (MQ=60)
TAAAGCTGTTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAG < SRR4302547.871937/94‑1 (MQ=60)
TAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAG > SRR4302547.2938767/1‑94 (MQ=60)
TAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAG < SRR4302547.36666/94‑1 (MQ=60)
AAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGC < SRR4302547.5444675/94‑1 (MQ=60)
AAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCA > SRR4302547.3661870/1‑94 (MQ=60)
AAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCA > SRR4302547.2225630/1‑94 (MQ=60)
AAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCA < SRR4302547.4732858/94‑1 (MQ=60)
AGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCAT < SRR4302547.6623289/94‑1 (MQ=60)
AGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCAT > SRR4302547.4759212/1‑94 (MQ=60)
AGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCAT < SRR4302547.142979/94‑1 (MQ=60)
AGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCAT > SRR4302547.5589366/1‑94 (MQ=60)
AGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCAT > SRR4302547.6477686/1‑94 (MQ=60)
GCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATC < SRR4302547.428063/94‑1 (MQ=60)
GCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATC < SRR4302547.1218544/94‑1 (MQ=60)
GCGGGTTGTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATC < SRR4302547.6488132/94‑1 (MQ=60)
CTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCG > SRR4302547.5022997/1‑94 (MQ=60)
CTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCG < SRR4302547.761113/94‑1 (MQ=60)
TGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGT < SRR4302547.1856129/94‑1 (MQ=60)
TGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGT < SRR4302547.55727/94‑1 (MQ=60)
GGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTT < SRR4302547.4590482/94‑1 (MQ=60)
GGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTT < SRR4302547.727584/94‑1 (MQ=60)
GTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTA > SRR4302547.1291824/1‑94 (MQ=60)
TTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACC < SRR4302547.3403278/94‑1 (MQ=60)
TTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCT > SRR4302547.3075506/1‑94 (MQ=60)
TTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCT > SRR4302547.5501503/1‑94 (MQ=60)
TGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTG < SRR4302547.203962/94‑1 (MQ=60)
TGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCAGCGTTACCTG < SRR4302547.6634425/94‑1 (MQ=60)
GCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGA < SRR4302547.3437843/94‑1 (MQ=60)
CACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACC < SRR4302547.2159362/94‑1 (MQ=60)
CACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACC < SRR4302547.593111/94‑1 (MQ=60)
CACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACC < SRR4302547.4337816/94‑1 (MQ=60)
CACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGCGTTTGAATCACTGGATCGACTGGAGCAGGTTTTAGGCCAGCATCGATACCTGACG > SRR4302547.996441/1‑94 (MQ=60)
CACCAGCCAGGAAGCTTACGACGAGGCGGTGGCCAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACC < SRR4302547.6322790/94‑1 (MQ=60)
ACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCG < SRR4302547.6060586/94‑1 (MQ=60)
ACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCG < SRR4302547.4425197/94‑1 (MQ=60)
CCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGG < SRR4302547.3844824/94‑1 (MQ=60)
CAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGC < SRR4302547.3805137/94‑1 (MQ=60)
AGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCA > SRR4302547.3094558/1‑94 (MQ=60)
AGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCA > SRR4302547.2091282/1‑94 (MQ=60)
AGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCA > SRR4302547.3464212/1‑94 (MQ=60)
GCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAA < SRR4302547.2738295/94‑1 (MQ=60)
GCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAA < SRR4302547.3024894/94‑1 (MQ=60)
CCAGGAAGCTTCCGACGAGGCGGTGGCGCAAGTGTTTGAATCACTGGCACGACTGGAGCAGAGTTTAGGCCAGCATCGTTACCTGACCGGCAAC > SRR4302547.3696608/1‑94 (MQ=60)
CCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAAC > SRR4302547.4019620/1‑94 (MQ=60)
CAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGGTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACC > SRR4302547.5621783/1‑94 (MQ=60)
AGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCA > SRR4302547.3185734/1‑94 (MQ=60)
AGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCA > SRR4302547.4018718/1‑94 (MQ=60)
AGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCA > SRR4302547.3992280/1‑94 (MQ=60)
AGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCA > SRR4302547.5273892/1‑94 (MQ=60)
AGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGAAACCA > SRR4302547.3817371/1‑94 (MQ=60)
GAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGC > SRR4302547.4269958/1‑94 (MQ=60)
GAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGC < SRR4302547.2690668/94‑1 (MQ=60)
AAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCT > SRR4302547.6707157/1‑94 (MQ=60)
AGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTA > SRR4302547.828920/1‑94 (MQ=60)
GCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAA < SRR4302547.4575090/94‑1 (MQ=60)
GCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAA < SRR4302547.6379475/94‑1 (MQ=60)
CTTACGACGAGGCGGTGGCGAAAGGGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAAC > SRR4302547.568465/1‑94 (MQ=60)
TTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGTCCGGCAACCAGCTAACC < SRR4302547.3498717/94‑1 (MQ=60)
TTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACC < SRR4302547.2583052/94‑1 (MQ=60)
TTACGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACC < SRR4302547.6221031/94‑1 (MQ=60)
TTACCACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGTAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACC < SRR4302547.4208427/94‑1 (MQ=60)
CGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAA > SRR4302547.4635349/1‑94 (MQ=60)
CGACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAA < SRR4302547.2717881/94‑1 (MQ=60)
GACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAG < SRR4302547.1586040/94‑1 (MQ=60)
GACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAG > SRR4302547.1577714/1‑94 (MQ=60)
GACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAG > SRR4302547.1838725/1‑94 (MQ=60)
GACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAG > SRR4302547.74419/1‑94 (MQ=60)
ACGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGC < SRR4302547.1657923/94‑1 (MQ=60)
CGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTCACCGAAGCC > SRR4302547.3867585/1‑94 (MQ=60)
CGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCC < SRR4302547.6657908/94‑1 (MQ=60)
CGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCC < SRR4302547.4594107/94‑1 (MQ=60)
CGAGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCC > SRR4302547.5722860/1‑94 (MQ=60)
GAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCG > SRR4302547.3319342/1‑94 (MQ=60)
AGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGA > SRR4302547.5805081/1‑94 (MQ=60)
AGGCGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGA < SRR4302547.6701894/94‑1 (MQ=60)
GGCGGTGGCGAAAGTGTTTGAATCACTGGCACGTCTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACGAGCTAACCGAAGCCGAT < SRR4302547.530824/94‑1 (MQ=60)
CGGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATAT > SRR4302547.5132812/1‑94 (MQ=60)
GGTGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATT < SRR4302547.2162943/94‑1 (MQ=60)
GTGACGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTC < SRR4302547.2253332/94‑1 (MQ=60)
TGGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCG < SRR4302547.3730804/94‑1 (MQ=60)
GGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGC < SRR4302547.2842644/94‑1 (MQ=60)
GGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGC < SRR4302547.3510295/94‑1 (MQ=60)
GGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGC < SRR4302547.110407/94‑1 (MQ=60)
GGCGAAAGTGTTTGAATCACTGGCACGACTGGAGCAGACTTTATGGCAGCATCGGTACCTGACCCGCAACCAGCTAACCGAAGCCGATATTCGC > SRR4302547.6426045/1‑94 (MQ=60)
CGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCT < SRR4302547.3252351/94‑1 (MQ=60)
CGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCT < SRR4302547.3254351/94‑1 (MQ=60)
GAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTG > SRR4302547.3455272/1‑94 (MQ=60)
GAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTG < SRR4302547.1228969/94‑1 (MQ=60)
GAAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTG > SRR4302547.5540816/1‑94 (MQ=60)
AAAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGC > SRR4302547.2804604/1‑94 (MQ=60)
AAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGTCTGTG > SRR4302547.5435527/1‑94 (MQ=60)
AAGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTG < SRR4302547.976882/94‑1 (MQ=60)
AGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGG > SRR4302547.1687469/1‑94 (MQ=60)
AGTGTTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGG > SRR4302547.6541175/1‑94 (MQ=60)
GTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACT < SRR4302547.4766735/94‑1 (MQ=60)
GTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACT < SRR4302547.6651950/94‑1 (MQ=60)
GTTTGAATCGCTGGCACGACTGGAGCAGAGTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGAGT > SRR4302547.3093919/1‑94 (MQ=60)
TTTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTA > SRR4302547.3212945/1‑94 (MQ=60)
TTTGAATCAATGGCACGACTTGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTA > SRR4302547.6580253/1‑94 (MQ=60)
TTGAATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGCCTAC > SRR4302547.5095705/1‑94 (MQ=60)
AATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCT > SRR4302547.5558060/1‑94 (MQ=60)
AATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCT > SRR4302547.6305493/1‑94 (MQ=60)
AATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCT < SRR4302547.6297174/94‑1 (MQ=60)
AATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCT < SRR4302547.3391447/94‑1 (MQ=60)
AATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCT < SRR4302547.4551703/94‑1 (MQ=60)
AATCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCT > SRR4302547.436207/1‑94 (MQ=60)
ATCACTGGCACGAGTGGAGCAGATTTGAGGACAGCACCGTTACCTGACCGGCAACCAGCTAACCGACGCCGATATTCGCCTGTGGACTACGCTG < SRR4302547.3233475/94‑1 (MQ=60)
TCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTCACTTGACGGGCAACCAGCTAACCGAAGCAGATATCCGCCTGTGGACTACGCTGG < SRR4302547.5490489/94‑1 (MQ=60)
TCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCTGG > SRR4302547.4442219/1‑94 (MQ=60)
TCACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCTGG > SRR4302547.442653/1‑94 (MQ=60)
ACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCGTGTGGACTACGCTGGTG > SRR4302547.1362545/1‑94 (MQ=60)
ACTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCTGGTG < SRR4302547.3373293/94‑1 (MQ=60)
|
TTTATGACACCGTTAACAACGGCGTGTATAAAGCTGGTTTTGCCACCAGCCAGGAAGCTTACGACGAGGCGGTGGCGAAAGTGTTTGAATCGCTGGCACGACTGGAGCAGATTTTAGGCCAGCATCGTTACCTGACCGGCAACCAGCTAACCGAAGCCGATATTCGCCTGTGGACTACGCTGGTG > NC_000913/3249220‑3249404
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
