Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,342,306	T→C	L241P (CTC→CCC)	yhbG →	putative ATP‑binding component of a transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,342,306	0	T	C	88.2%	787.2 / 82.9	279	L241P (CTC→CCC)	yhbG	putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand): ref base T (14/19); new base C (120/126); total (134/145)
Fisher's exact test for biased strand distribution p-value = 5.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.99e-01

Only 100 of 292 total aligned reads displayed.

GTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACT  >  NC_000913/3342216‑3342395

gtcagGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGAccct                                                                                         <  2:3381089/93‑1 (MQ=255)

gtcagGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGAccct                                                                                         >  1:5445743/1‑93 (MQ=255)

gtcagGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGAccct                                                                                         >  2:5962007/1‑93 (MQ=255)

gtcagGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGAccct                                                                                         <  2:5344677/93‑1 (MQ=255)

gtcagGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGAccct                                                                                         <  1:2823454/93‑1 (MQ=255)

gtcagGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGAccct                                                                                         <  2:2273974/93‑1 (MQ=255)

 tcagGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTg                                                                                        >  1:5815877/1‑93 (MQ=255)

 gcagGCGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTg                                                                                        <  1:2092908/92‑1 (MQ=255)

   agGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGAt                                                                                      >  2:3787032/1‑93 (MQ=255)

   agGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGAt                                                                                      <  2:2863494/93‑1 (MQ=255)

      ggCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAgg                                                                                   <  2:435931/93‑1 (MQ=255)

      ggCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAgg                                                                                   <  2:4194388/93‑1 (MQ=255)

       gCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAggg                                                                                  >  2:1605709/1‑93 (MQ=255)

        cATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGt                                                                                 <  1:4806235/93‑1 (MQ=255)

         aTTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTa                                                                                >  1:4900872/1‑93 (MQ=255)

         aTTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTa                                                                                >  2:900161/1‑93 (MQ=255)

           ttGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGa                                                                              <  1:4750256/93‑1 (MQ=255)

           ttGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGa                                                                              <  1:3358039/93‑1 (MQ=255)

           ttGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGa                                                                              <  1:4102510/93‑1 (MQ=255)

            tGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGaa                                                                             >  1:2522945/1‑93 (MQ=255)

             gATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAg                                                                            <  2:2577269/93‑1 (MQ=255)

              aTCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGt                                                                           >  1:945076/1‑93 (MQ=255)

                cGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGttt                                                                         >  1:1620389/1‑93 (MQ=255)

                cGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGttt                                                                         >  1:2774752/1‑93 (MQ=255)

                   ccACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGCATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCg                                                                      <  1:5423299/93‑1 (MQ=255)

                    cACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGa                                                                     <  2:2009006/93‑1 (MQ=255)

                     aCGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGAc                                                                    >  2:3588039/1‑93 (MQ=255)

                     aCGGCACGCCTACAGAAATCCTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGAc                                                                    >  2:6643928/1‑93 (MQ=255)

                      cGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACg                                                                   <  2:2641993/93‑1 (MQ=255)

                       ggCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGt                                                                  <  1:3281618/93‑1 (MQ=255)

                       ggCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGt                                                                  <  2:3282494/93‑1 (MQ=255)

                        gCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGtt                                                                 >  2:4638849/1‑93 (MQ=255)

                        gCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGtt                                                                 <  1:1788262/93‑1 (MQ=255)

                          aCGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGtttt                                                               <  2:3482041/93‑1 (MQ=255)

                          aCGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGtttt                                                               <  2:5116835/93‑1 (MQ=255)

                          aCGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGtttt                                                               >  2:1450447/1‑93 (MQ=255)

                           cGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTa                                                              >  1:4488762/1‑93 (MQ=255)

                           cGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTa                                                              <  2:4498255/93‑1 (MQ=255)

                            gCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAg                                                             <  2:3901478/93‑1 (MQ=255)

                            gCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAg                                                             <  2:4449754/93‑1 (MQ=255)

                            gCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAg                                                             >  1:1999430/1‑93 (MQ=255)

                             ccTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGt                                                                  <  1:6556139/87‑1 (MQ=255)

                              cTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCa                                                           <  2:507464/93‑1 (MQ=255)

                              cTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCa                                                           >  1:6146481/1‑93 (MQ=255)

                              cTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCa                                                           >  1:1075822/1‑93 (MQ=255)

                               tACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAg                                                          >  2:5827327/1‑93 (MQ=255)

                                aCAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAgg                                                         >  1:3835521/1‑93 (MQ=255)

                                  aGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGgag                                                       >  2:2947046/1‑93 (MQ=255)

                                   gAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGgaga                                                      <  2:2835842/93‑1 (MQ=255)

                                    aaaTCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGagag                                                     >  1:1604066/1‑93 (MQ=255)

                                     aaTCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGt                                                    <  1:1435648/93‑1 (MQ=255)

                                     aaTCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGt                                                    <  2:3861625/93‑1 (MQ=255)

                                      aTCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTa                                                   >  1:6250410/1‑93 (MQ=255)

                                      aTCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTa                                                   >  2:1290806/1‑93 (MQ=255)

                                       tCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTAc                                                  <  1:3601012/93‑1 (MQ=255)

                                       tCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTAc                                                  >  1:2913716/1‑93 (MQ=255)

                                       tCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTAc                                                  <  2:6454901/93‑1 (MQ=255)

                                         ttACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGa                                                <  1:2358964/93‑1 (MQ=255)

                                         ttACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGa                                                >  2:1149398/1‑93 (MQ=255)

                                         ttACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGa                                                <  1:4592724/93‑1 (MQ=255)

                                         ttACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGa                                                >  1:5588380/1‑93 (MQ=255)

                                          tACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGAt                                               >  2:5440009/1‑93 (MQ=255)

                                           aCAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGAtt                                              <  2:1538597/93‑1 (MQ=255)

                                            cAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTc                                             <  1:2654158/93‑1 (MQ=255)

                                             aaGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCt                                            >  1:5198818/1‑93 (MQ=255)

                                               gACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGa                                          <  2:4395613/93‑1 (MQ=255)

                                                aCGTACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGaa                                         >  2:6117428/1‑93 (MQ=255)

                                                aCGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGATAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGaa                                         <  1:1563199/93‑1 (MQ=255)

                                                 cGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAAc                                        >  2:3940184/1‑93 (MQ=255)

                                                      acGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGaa                                   <  2:239543/93‑1 (MQ=255)

                                                       cGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAg                                  <  2:219673/93‑1 (MQ=255)

                                                        gTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGc                                 <  2:1802949/93‑1 (MQ=255)

                                                        gTTAAGCGTGTATACCGTGGGGAAGGCTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGc                                 <  2:6197775/93‑1 (MQ=255)

                                                          tAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCaa                               <  1:5262335/93‑1 (MQ=255)

                                                              cGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGtt                           <  1:5539390/93‑1 (MQ=255)

                                                               gtgtATGCCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGttt                          <  1:1121554/93‑1 (MQ=255)

                                                               gtgtATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGttt                          >  1:5390658/1‑93 (MQ=255)

                                                                 gtATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGc                        <  2:4113590/93‑1 (MQ=255)

                                                                  tataCCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCa                       <  2:4879549/93‑1 (MQ=255)

                                                                   ataCCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCaa                      >  2:661215/1‑93 (MQ=255)

                                                                    taCCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAAc                     <  1:3624547/93‑1 (MQ=255)

                                                                      ccTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTc                   >  1:2843910/1‑93 (MQ=255)

                                                                       cTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCa                  >  1:1148967/1‑93 (MQ=255)

                                                                       cTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCa                  <  1:3469922/93‑1 (MQ=255)

                                                                        ttGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAg                 >  2:6539544/1‑93 (MQ=255)

                                                                        ttGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAg                 >  2:2760479/1‑93 (MQ=255)

                                                                         tGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAgg                >  1:769804/1‑93 (MQ=255)

                                                                          ggggAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGc               <  1:4353022/93‑1 (MQ=255)

                                                                           gggAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAAGTTTGCAACTCAGGCt              >  1:5737899/1‑93 (MQ=255)

                                                                             gAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTa            <  1:4276586/93‑1 (MQ=255)

                                                                             gAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTa            >  2:5603871/1‑93 (MQ=255)

                                                                               aGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTaac          >  2:714094/1‑91 (MQ=255)

                                                                               aGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGc          >  2:3620453/1‑93 (MQ=255)

                                                                                gACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGcc         <  1:3908877/93‑1 (MQ=255)

                                                                                gACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGca         >  2:5188433/1‑92 (MQ=255)

                                                                                    tCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCcaaca     >  2:6378134/1‑93 (MQ=255)

                                                                                    tCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCcaaca     <  2:1892662/93‑1 (MQ=255)

                                                                                      aGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCaacaac   <  1:4091958/93‑1 (MQ=255)

                                                                                       gACCCTGCTAGGGAAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACt  >  1:5977667/1‑93 (MQ=255)

                                                                                       gACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACt  <  2:777237/93‑1 (MQ=255)

GTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACT  >  NC_000913/3342216‑3342395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCAGTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCG  >  NC_000913/3342213‑3342399

TCAGTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACC                                                                                               <  SRR4302547.923275/94‑1 (MQ=60)

  AGTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCT                                                                                             >  SRR4302547.5558264/1‑94 (MQ=60)

  AGTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCT                                                                                             >  SRR4302547.5713313/1‑94 (MQ=60)

   GTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTG                                                                                            <  SRR4302547.2912608/94‑1 (MQ=60)

   GTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTG                                                                                            >  SRR4302547.5936208/1‑94 (MQ=60)

   GTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTG                                                                                            >  SRR4302547.4868100/1‑94 (MQ=60)

   GTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTG                                                                                            <  SRR4302547.2879932/94‑1 (MQ=60)

   ATCAGGGGCATTTGATCGCCCAAGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTG                                                                                            <  SRR4302547.3467725/94‑1 (MQ=60)

    TCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGA                                                                                           >  SRR4302547.6003963/1‑94 (MQ=60)

    GCAGGCGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGA                                                                                           <  SRR4302547.2134621/94‑1 (MQ=60)

       GGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAG                                                                                        <  SRR4302547.2792268/94‑1 (MQ=60)

         GGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGG                                                                                      <  SRR4302547.3462388/94‑1 (MQ=60)

         GGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGG                                                                                      <  SRR4302547.3110375/94‑1 (MQ=60)

          GCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGT                                                                                     >  SRR4302547.3626119/1‑94 (MQ=60)

           CATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTA                                                                                    >  SRR4302547.5562003/1‑94 (MQ=60)

           CATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTA                                                                                    <  SRR4302547.4905841/94‑1 (MQ=60)

           CATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTA                                                                                    >  SRR4302547.5002353/1‑94 (MQ=60)

           CATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTA                                                                                    >  SRR4302547.5542348/1‑94 (MQ=60)

           CATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTA                                                                                    <  SRR4302547.4687714/94‑1 (MQ=60)

            ATTTGATCGCCCAGGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAG                                                                                   <  SRR4302547.2077351/94‑1 (MQ=60)

              TTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAA                                                                                 <  SRR4302547.1847848/94‑1 (MQ=60)

              TTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAA                                                                                 <  SRR4302547.3426160/94‑1 (MQ=60)

              TTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAA                                                                                 >  SRR4302547.2573928/1‑94 (MQ=60)

              TTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAA                                                                                 <  SRR4302547.4848685/94‑1 (MQ=60)

              TTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAA                                                                                 <  SRR4302547.4185924/94‑1 (MQ=60)

               TGATCGCCCACGGCGCGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAG                                                                                >  SRR4302547.6669713/1‑94 (MQ=60)

                GATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGT                                                                               >  SRR4302547.963397/1‑94 (MQ=60)

                GACCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGT                                                                               >  SRR4302547.5538611/1‑94 (MQ=60)

                 ATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTT                                                                              <  SRR4302547.4734651/94‑1 (MQ=60)

                  TCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTT                                                                             >  SRR4302547.1652456/1‑94 (MQ=60)

                  TCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTT                                                                             >  SRR4302547.2830329/1‑94 (MQ=60)

                   CGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTG                                                                            >  SRR4302547.5920614/1‑94 (MQ=60)

                    GCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGC                                                                           <  SRR4302547.5131815/94‑1 (MQ=60)

                     CCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCG                                                                          <  SRR4302547.1169152/94‑1 (MQ=60)

                     CCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCG                                                                          >  SRR4302547.5430337/1‑94 (MQ=60)

                      CCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGA                                                                         >  SRR4302547.2933236/1‑94 (MQ=60)

                      CCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGA                                                                         <  SRR4302547.2897831/94‑1 (MQ=60)

                      CCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGCATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGA                                                                         <  SRR4302547.5535455/94‑1 (MQ=60)

                       CACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGCAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGAC                                                                        >  SRR4302547.1148389/1‑94 (MQ=60)

                         CGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGT                                                                      >  SRR4302547.4460544/1‑94 (MQ=60)

                          acattGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTT                                                                     <  SRR4302547.6692658/89‑1 (MQ=60)

                          GGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTT                                                                     <  SRR4302547.339582/94‑1 (MQ=60)

                          GGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTT                                                                     <  SRR4302547.3347409/94‑1 (MQ=60)

                          CGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTT                                                                     <  SRR4302547.2840614/94‑1 (MQ=60)

                           GCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTT                                                                    <  SRR4302547.1823664/94‑1 (MQ=60)

                            CACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTT                                                                   <  SRR4302547.2371462/94‑1 (MQ=60)

                             ACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTA                                                                  >  SRR4302547.5681961/1‑94 (MQ=60)

                             ACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTA                                                                  >  SRR4302547.3712770/1‑94 (MQ=60)

                             ACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTA                                                                  >  SRR4302547.4581488/1‑94 (MQ=60)

                             ACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTA                                                                  <  SRR4302547.1858704/94‑1 (MQ=60)

                              CGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAG                                                                 >  SRR4302547.2039206/1‑94 (MQ=60)

                                CCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCA                                                               <  SRR4302547.450856/94‑1 (MQ=60)

                                CCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCA                                                               >  SRR4302547.1097294/1‑94 (MQ=60)

                                CCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCA                                                               <  SRR4302547.2175355/94‑1 (MQ=60)

                                CCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCA                                                               >  SRR4302547.6274002/1‑94 (MQ=60)

                                 CTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAG                                                              >  SRR4302547.1343462/1‑94 (MQ=60)

                                 CTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAG                                                              >  SRR4302547.6431530/1‑94 (MQ=60)

                                  TACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGG                                                             <  SRR4302547.3675229/94‑1 (MQ=60)

                                  GACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGG                                                             >  SRR4302547.3913644/1‑94 (MQ=60)

                                   ACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGA                                                            >  SRR4302547.1648797/1‑94 (MQ=60)

                                      GAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAG                                                         >  SRR4302547.4406905/1‑94 (MQ=60)

                                      GAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAG                                                         >  SRR4302547.3151552/1‑94 (MQ=60)

                                      GAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAG                                                         <  SRR4302547.856302/94‑1 (MQ=60)

                                      GAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAG                                                         >  SRR4302547.1635883/1‑94 (MQ=60)

                                        AATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTA                                                       >  SRR4302547.6380255/1‑94 (MQ=60)

                                        AATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTA                                                       <  SRR4302547.1464350/94‑1 (MQ=60)

                                        AATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTA                                                       <  SRR4302547.4940368/94‑1 (MQ=60)

                                         ATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTAC                                                      >  SRR4302547.2971834/1‑94 (MQ=60)

                                         ATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTAC                                                      <  SRR4302547.3931421/94‑1 (MQ=60)

                                          TCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACG                                                     <  SRR4302547.1814440/94‑1 (MQ=60)

                                          TCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACG                                                     <  SRR4302547.3674443/94‑1 (MQ=60)

                                          TCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACG                                                     <  SRR4302547.5845260/94‑1 (MQ=60)

                                           CTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGA                                                    >  SRR4302547.2612416/1‑94 (MQ=60)

                                           CTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGA                                                    >  SRR4302547.5703659/1‑94 (MQ=60)

                                            TTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGAT                                                   <  SRR4302547.2406767/94‑1 (MQ=60)

                                            TTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGAT                                                   <  SRR4302547.4687760/94‑1 (MQ=60)

                                            TTACAAGACGAACACGTGAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGAT                                                   <  SRR4302547.3988423/94‑1 (MQ=60)

                                             TACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATT                                                  >  SRR4302547.3775702/1‑94 (MQ=60)

                                               CAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCT                                                <  SRR4302547.2707508/94‑1 (MQ=60)

                                               CAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCT                                                <  SRR4302547.3993803/94‑1 (MQ=60)

                                               CAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCT                                                >  SRR4302547.5305802/1‑94 (MQ=60)

                                                AAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAatgtcaagatcggaagagc                                               <  SRR4302547.4743059/94‑20 (MQ=60)

                                                 AGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGA                                              <  SRR4302547.1709306/94‑1 (MQ=60)

                                                 AGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGA                                              >  SRR4302547.564837/1‑94 (MQ=60)

                                                   ACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGATAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAAC                                            <  SRR4302547.1594341/94‑1 (MQ=60)

                                                       ACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGA                                        <  SRR4302547.499308/94‑1 (MQ=60)

                                                       ACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGA                                        >  SRR4302547.992409/1‑94 (MQ=60)

                                                       ACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGA                                        >  SRR4302547.4658252/1‑94 (MQ=60)

                                                         ACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAG                                      <  SRR4302547.5341530/94‑1 (MQ=60)

                                                           GTTAAGCGTGTATACCTTGGGGAAGACTACAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCA                                    <  SRR4302547.1618105/94‑1 (MQ=60)

                                                             TAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAG                                  <  SRR4302547.1648841/94‑1 (MQ=60)

                                                             TAAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAG                                  <  SRR4302547.5370698/94‑1 (MQ=60)

                                                              AAGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGG                                 <  SRR4302547.6368300/94‑1 (MQ=60)

                                                               AGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGT                                <  SRR4302547.1254359/94‑1 (MQ=60)

                                                               AGCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGT                                <  SRR4302547.2672064/94‑1 (MQ=60)

                                                                GCGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTT                               >  SRR4302547.2060355/1‑94 (MQ=60)

                                                                 CGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTT                              >  SRR4302547.3945882/1‑94 (MQ=60)

                                                                 CGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTT                              <  SRR4302547.5653723/94‑1 (MQ=60)

                                                                 CGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTT                              <  SRR4302547.1108662/94‑1 (MQ=60)

                                                                 CGTGTATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTT                              >  SRR4302547.5501993/1‑94 (MQ=60)

                                                                  GTGTATGCCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTG                             <  SRR4302547.1144171/94‑1 (MQ=60)

                                                                      ATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAAC                         <  SRR4302547.930178/94‑1 (MQ=60)

                                                                      ATACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAAC                         >  SRR4302547.5502454/1‑94 (MQ=60)

                                                                       TACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACT                        <  SRR4302547.3698476/94‑1 (MQ=60)

                                                                       TACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACT                        <  SRR4302547.606243/94‑1 (MQ=60)

                                                                       TACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACT                        >  SRR4302547.6776992/1‑94 (MQ=60)

                                                                        ACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTC                       >  SRR4302547.2900731/1‑94 (MQ=60)

                                                                        ACCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTC                       <  SRR4302547.1550577/94‑1 (MQ=60)

                                                                         CCTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCA                      >  SRR4302547.1172201/1‑94 (MQ=60)

                                                                          CTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAG                     <  SRR4302547.5927179/94‑1 (MQ=60)

                                                                          CTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAG                     <  SRR4302547.2518256/94‑1 (MQ=60)

                                                                          CTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAG                     <  SRR4302547.3540688/94‑1 (MQ=60)

                                                                          CTTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAG                     >  SRR4302547.725450/1‑94 (MQ=60)

                                                                           TTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGG                    >  SRR4302547.784351/1‑94 (MQ=60)

                                                                           TTGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGG                    <  SRR4302547.4979947/94‑1 (MQ=60)

                                                                            TGGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGC                   >  SRR4302547.5359443/1‑94 (MQ=60)

                                                                             GGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAAGTTTGCAACTCAGGCT                  >  SRR4302547.5856463/1‑94 (MQ=60)

                                                                             GGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCT                  >  SRR4302547.4867512/1‑94 (MQ=60)

                                                                             GGGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCT                  <  SRR4302547.4442457/94‑1 (MQ=60)

                                                                              GGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTT                 <  SRR4302547.3648549/94‑1 (MQ=60)

                                                                              GGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTT                 <  SRR4302547.1622711/94‑1 (MQ=60)

                                                                              GGGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTT                 >  SRR4302547.6151005/1‑94 (MQ=60)

                                                                               GGAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTA                <  SRR4302547.6310526/94‑1 (MQ=60)

                                                                                GAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAG               <  SRR4302547.4185643/94‑1 (MQ=60)

                                                                                GAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAG               <  SRR4302547.2562624/94‑1 (MQ=60)

                                                                                GAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAG               <  SRR4302547.4829706/94‑1 (MQ=60)

                                                                                GAAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAG               <  SRR4302547.4364417/94‑1 (MQ=60)

                                                                                 AAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGC              >  SRR4302547.624113/1‑94 (MQ=60)

                                                                                 AAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGC              >  SRR4302547.4362062/1‑94 (MQ=60)

                                                                                 AAGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGC              >  SRR4302547.1576470/1‑94 (MQ=60)

                                                                                  AGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCC             <  SRR4302547.2885550/94‑1 (MQ=60)

                                                                                  AGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCC             <  SRR4302547.4183106/94‑1 (MQ=60)

                                                                                  AGACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCC             >  SRR4302547.5502776/1‑94 (MQ=60)

                                                                                   GACTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCA            <  SRR4302547.3988373/94‑1 (MQ=60)

                                                                                     CTTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAAC          >  SRR4302547.4433990/1‑94 (MQ=60)

                                                                                      TTCAGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACA         >  SRR4302547.3679211/1‑94 (MQ=60)

                                                                                        CAGACCCTGATAGGTGAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGGTTGCAACTCAGGCTTAGCCAACAAC       >  SRR4302547.3416400/1‑94 (MQ=60)

                                                                                         AGACCCTGCTAGGGAAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACT      >  SRR4302547.6101657/1‑94 (MQ=60)

                                                                                         AGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACT      >  SRR4302547.2865610/1‑94 (MQ=60)

                                                                                         AGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACT      <  SRR4302547.4175166/94‑1 (MQ=60)

                                                                                         AGACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACT      >  SRR4302547.5462706/1‑94 (MQ=60)

                                                                                           ACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGG    >  SRR4302547.6104591/1‑94 (MQ=60)

                                                                                           ACCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGG    >  SRR4302547.3178332/1‑94 (MQ=60)

                                                                                            CCCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGC   <  SRR4302547.1851802/94‑1 (MQ=60)

                                                                                             CCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCG  >  SRR4302547.2204895/1‑94 (MQ=60)

                                                                                             CCTGATAGGCTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCG  <  SRR4302547.3404546/94‑1 (MQ=60)

TCAGTCAGGGGCATTTGATCGCCCACGGCACGCCTACAGAAATCTTACAAGACGAACACGTTAAGCGTGTATACCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCG  >  NC_000913/3342213‑3342399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`