Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,881,483 Δ1 bp intergenic (‑126/‑482) dnaA ← / → rpmH DnaA/50S ribosomal subunit protein L34

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,881,4830G.99.7% 1652.4 / ‑3.9 350intergenic (‑126/‑482)dnaA/rpmHDnaA/50S ribosomal subunit protein L34
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base . (178/171);  total (179/171)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 356 total aligned reads displayed.

GGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTA  >  NC_000913/3881395‑3881570
                                                                                        |                                                                                       
ggCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAg                                                                                    >  2:4267715/1‑93 (MQ=255)
ggCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAg                                                                                    <  2:6492524/93‑1 (MQ=255)
ggCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAg                                                                                    >  2:6613668/1‑93 (MQ=255)
 gCTGAAACATTCATGATTGTTGACGTCCGTCGAAAAGACCCTGCTTGAGGGTGACGCTCGAACCGCTGTCTGCGGTTATATGCCCGATCAAGa                                                                                   <  2:5807245/93‑1 (MQ=255)
   tGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATc                                                                                 >  1:3973804/1‑93 (MQ=255)
   tGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATc                                                                                 <  2:4020370/93‑1 (MQ=255)
    gAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATcc                                                                                <  1:3233563/93‑1 (MQ=255)
     aaaCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCt                                                                               >  2:1768596/1‑93 (MQ=255)
     aaaCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCt                                                                               >  2:1071277/1‑93 (MQ=255)
      aaaaTTCATGATTGTTGACGTACGTCGAAAAGAACCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTg                                                                              >  1:3193212/4‑93 (MQ=255)
      aaCATTCATGATTGTTGACGTACGTCGAAAATGCCCTTCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTg                                                                              <  2:2238509/93‑1 (MQ=255)
      aaCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTg                                                                              >  2:1010590/1‑93 (MQ=255)
      aaCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTg                                                                              <  1:4126313/93‑1 (MQ=255)
      aaCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTg                                                                              >  2:2668633/1‑93 (MQ=255)
       aCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGc                                                                             >  1:3523774/1‑93 (MQ=255)
        cATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCa                                                                            >  1:3848420/1‑93 (MQ=255)
         aTTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCaa                                                                           >  2:4781083/1‑93 (MQ=255)
         aTTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCaa                                                                           >  1:3036276/1‑93 (MQ=255)
          ttCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCaaa                                                                          >  2:3435232/1‑93 (MQ=255)
          ttCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCaaa                                                                          >  2:3654733/1‑93 (MQ=255)
          ttCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCaaa                                                                          >  1:2607194/1‑93 (MQ=255)
           tCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCTGTTATATGCCCGATCAAGATCCTGCaaaa                                                                         <  1:6186041/93‑1 (MQ=255)
            cATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAAc                                                                        <  2:2178705/93‑1 (MQ=255)
            cATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAAc                                                                        <  1:2142045/93‑1 (MQ=255)
            cATGATGGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAAc                                                                        <  2:5380859/93‑1 (MQ=255)
              tGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGa                                                                      >  2:390054/1‑93 (MQ=255)
              tGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGa                                                                      >  1:6269361/1‑93 (MQ=255)
              tGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGa                                                                      >  1:6137213/1‑93 (MQ=255)
                aTTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATc                                                                    <  2:5040373/93‑1 (MQ=255)
                aTTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATc                                                                    <  2:4708492/93‑1 (MQ=255)
                aTTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATc                                                                    <  2:1458515/93‑1 (MQ=255)
                aTTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATc                                                                    <  1:5452392/93‑1 (MQ=255)
                 ttgttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCg                                                                   <  2:5437001/93‑1 (MQ=255)
                   gttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCggg                                                                 >  1:5829633/1‑93 (MQ=255)
                    ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATGGGGa                                                                <  2:3491080/93‑1 (MQ=255)
                    ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGa                                                                >  2:5626396/1‑93 (MQ=255)
                    ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGa                                                                >  1:799703/1‑93 (MQ=255)
                     tgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGAc                                                               >  1:3387848/1‑93 (MQ=255)
                     tgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGAc                                                               >  1:435311/1‑93 (MQ=255)
                      gACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGAcc                                                              >  1:149013/1‑93 (MQ=255)
                       acgtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACcg                                                             >  2:2356898/1‑93 (MQ=255)
                       acgtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACcg                                                             <  1:836634/93‑1 (MQ=255)
                         gtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACcgcg                                                           >  2:5315207/1‑93 (MQ=255)
                           acgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGa                                                         >  2:4525657/1‑93 (MQ=255)
                           acgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGa                                                         >  1:6588170/1‑93 (MQ=255)
                            cgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGAt                                                        <  1:6351218/93‑1 (MQ=255)
                            cgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGAt                                                        >  1:4597640/1‑93 (MQ=255)
                            cgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGAt                                                        <  1:1832137/93‑1 (MQ=255)
                              tCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCa                                                      <  2:2467962/93‑1 (MQ=255)
                              tCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCa                                                      <  1:1630453/93‑1 (MQ=255)
                               cGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCAt                                                     <  1:236168/93‑1 (MQ=255)
                                gAAAATACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa                                                    <  1:3118379/93‑1 (MQ=255)
                                gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa                                                    <  1:1953613/93‑1 (MQ=255)
                                gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa                                                    <  2:1244352/93‑1 (MQ=255)
                                gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa                                                    <  1:5533301/93‑1 (MQ=255)
                                 aaaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAg                                                   >  1:3311985/1‑93 (MQ=255)
                                    aGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCt                                                >  2:4128177/1‑93 (MQ=255)
                                      aCCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaa                                              <  1:1036382/93‑1 (MQ=255)
                                      aCCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaa                                              <  2:744423/93‑1 (MQ=255)
                                         cTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt                                           >  2:2536436/1‑93 (MQ=255)
                                         cTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt                                           >  1:3640678/1‑93 (MQ=255)
                                          tGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTg                                          >  2:6387063/1‑93 (MQ=255)
                                           gCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgc                                         >  2:3221971/1‑93 (MQ=255)
                                            cTTGAGGGTGACGCCCGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcg                                        <  1:3724003/93‑1 (MQ=255)
                                             ttGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATGGGGACCGCGGATCATAGCCTAAACTgcgc                                       >  1:4230109/1‑93 (MQ=255)
                                             ttGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcgc                                       >  2:2014628/1‑93 (MQ=255)
                                              tGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCa                                      >  1:2830723/1‑93 (MQ=255)
                                               gAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCaa                                     <  2:4863141/93‑1 (MQ=255)
                                                   gTGACGCACCAGCCGCTGTCTGCGGTTATATGCCTGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAgaga                                 <  2:620091/93‑1 (MQ=255)
                                                    tGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt                                <  1:1264054/93‑1 (MQ=255)
                                                     gACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtc                               <  1:5054147/93‑1 (MQ=255)
                                                     gACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtc                               >  2:2731977/1‑93 (MQ=255)
                                                     gACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtc                               <  2:5057105/93‑1 (MQ=255)
                                                     gACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtc                               >  2:703762/1‑93 (MQ=255)
                                                      aCGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct                              <  1:5172073/93‑1 (MQ=255)
                                                      aCGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct                              <  2:3770332/93‑1 (MQ=255)
                                                        gCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttc                            >  1:1360612/1‑93 (MQ=255)
                                                         cACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct                           <  2:5225417/93‑1 (MQ=255)
                                                          aCGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTg                          >  2:4159107/1‑93 (MQ=255)
                                                          aCGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTg                          >  1:5896688/1‑93 (MQ=255)
                                                           cGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGt                         >  1:3794805/1‑93 (MQ=255)
                                                            gAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGtt                        >  1:2035865/1‑93 (MQ=255)
                                                             aaCCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGttt                       >  1:4729613/1‑93 (MQ=255)
                                                             aaCCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGttt                       <  2:2063435/93‑1 (MQ=255)
                                                             aaCCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGttt                       >  1:2766760/1‑93 (MQ=255)
                                                              aCCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtc                      <  1:4488986/93‑1 (MQ=255)
                                                               ccGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtct                     <  2:1868964/93‑1 (MQ=255)
                                                                 gCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTca                   <  2:2907210/93‑1 (MQ=255)
                                                                    gTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGAGCAAGAGATCTTCTGTTTCTCACAg                >  1:1739469/1‑93 (MQ=255)
                                                                     tCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGa               >  2:3199079/1‑93 (MQ=255)
                                                                       tGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGAtt             >  2:2396795/1‑93 (MQ=255)
                                                                        gCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGAttt            <  2:6048562/93‑1 (MQ=255)
                                                                           gTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTcc         <  2:1565635/93‑1 (MQ=255)
                                                                           gTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTcc         <  2:2855477/93‑1 (MQ=255)
                                                                            ttATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTccc        >  2:4444447/1‑93 (MQ=255)
                                                                             tataTGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCg       <  1:4960997/93‑1 (MQ=255)
                                                                              atatGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGa      >  2:822103/1‑93 (MQ=255)
                                                                               tatGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGAt     >  2:2119018/1‑93 (MQ=255)
                                                                                 tGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTTCCGCttt   >  2:3087388/1‑93 (MQ=255)
                                                                                 tGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGAttt   <  1:6053847/93‑1 (MQ=255)
                                                                                        |                                                                                       
GGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTA  >  NC_000913/3881395‑3881570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACA  >  NC_000913/3881392‑3881576
                                                                                           |                                                                                             
TAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGGACCGCTGTCTGCGGCTATATGCCCGATCA                                                                                            >  SRR4302547.5916364/1‑94 (MQ=60)
TAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCA                                                                                            >  SRR4302547.1080797/1‑94 (MQ=60)
 AAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAA                                                                                           <  SRR4302547.767615/94‑1 (MQ=60)
 AAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAA                                                                                           >  SRR4302547.5112090/1‑94 (MQ=60)
 AAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAA                                                                                           >  SRR4302547.5763619/1‑94 (MQ=60)
 AAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAA                                                                                           >  SRR4302547.5937427/1‑94 (MQ=60)
  AGGCTGAAATATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAG                                                                                          <  SRR4302547.3117689/94‑1 (MQ=60)
    GCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGAT                                                                                        <  SRR4302547.1684265/94‑1 (MQ=60)
    GCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGAT                                                                                        <  SRR4302547.3126168/94‑1 (MQ=60)
    GCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGAT                                                                                        <  SRR4302547.4309098/94‑1 (MQ=60)
     CTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATC                                                                                       >  SRR4302547.3651930/1‑94 (MQ=60)
     CTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATC                                                                                       >  SRR4302547.3817712/1‑94 (MQ=60)
     CTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATC                                                                                       >  SRR4302547.914105/1‑94 (MQ=60)
     CTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATC                                                                                       >  SRR4302547.4054616/1‑94 (MQ=60)
       GAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCT                                                                                     <  SRR4302547.3298100/94‑1 (MQ=60)
       GAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCT                                                                                     >  SRR4302547.3561055/1‑94 (MQ=60)
       GAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCT                                                                                     <  SRR4302547.2142739/94‑1 (MQ=60)
        AAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTG                                                                                    <  SRR4302547.6692626/94‑1 (MQ=60)
        AAAAATTCATGATTGTTGACGTACGTCGAAAAGAACCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTG                                                                                    >  SRR4302547.3256843/1‑94 (MQ=60)
         AACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGC                                                                                   <  SRR4302547.4210235/94‑1 (MQ=60)
         AACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGC                                                                                   <  SRR4302547.6560010/94‑1 (MQ=60)
         AACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGC                                                                                   >  SRR4302547.3595698/1‑94 (MQ=60)
         AACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGC                                                                                   >  SRR4302547.2678267/1‑94 (MQ=60)
          ACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCA                                                                                  >  SRR4302547.3926770/1‑94 (MQ=60)
           CATTCATGATTGTTGACGTACGTCGGAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGGTCAAGATCCTGCAA                                                                                 >  SRR4302547.178842/1‑94 (MQ=60)
           CATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAA                                                                                 <  SRR4302547.6243646/94‑1 (MQ=60)
           CATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAA                                                                                 >  SRR4302547.3096680/1‑94 (MQ=60)
            ATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAA                                                                                >  SRR4302547.6286791/1‑94 (MQ=60)
            ATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAA                                                                                <  SRR4302547.5951935/94‑1 (MQ=60)
            ATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAA                                                                                >  SRR4302547.2659738/1‑94 (MQ=60)
              TCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCTGTTATATGCCCGATCAAGATCCTGCAAAAC                                                                              <  SRR4302547.6314439/94‑1 (MQ=60)
              TCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAAC                                                                              <  SRR4302547.339936/94‑1 (MQ=60)
              TCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAAC                                                                              <  SRR4302547.4890535/94‑1 (MQ=60)
              TCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAAC                                                                              >  SRR4302547.726250/1‑94 (MQ=60)
              TCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAAC                                                                              >  SRR4302547.5721362/1‑94 (MQ=60)
               CATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACG                                                                             >  SRR4302547.3325581/1‑94 (MQ=60)
               CATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACG                                                                             <  SRR4302547.964481/94‑1 (MQ=60)
               CATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACG                                                                             <  SRR4302547.2184771/94‑1 (MQ=60)
               CATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACG                                                                             >  SRR4302547.2297569/1‑94 (MQ=60)
                ATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGA                                                                            >  SRR4302547.6264524/1‑94 (MQ=60)
                ATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGA                                                                            >  SRR4302547.6399593/1‑94 (MQ=60)
                 TGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGAT                                                                           >  SRR4302547.4751781/1‑94 (MQ=60)
                  GATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATC                                                                          <  SRR4302547.3769369/94‑1 (MQ=60)
                   ATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCG                                                                         <  SRR4302547.4362644/94‑1 (MQ=60)
                   ATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCG                                                                         <  SRR4302547.3675496/94‑1 (MQ=60)
                   ATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCG                                                                         <  SRR4302547.5565060/94‑1 (MQ=60)
                    TTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGG                                                                        <  SRR4302547.6112140/94‑1 (MQ=60)
                    TTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGG                                                                        <  SRR4302547.6290899/94‑1 (MQ=60)
                    GTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGG                                                                        <  SRR4302547.6335397/94‑1 (MQ=60)
                     TGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGG                                                                       >  SRR4302547.2841090/1‑94 (MQ=60)
                     TGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGG                                                                       >  SRR4302547.5950263/1‑94 (MQ=60)
                      GTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGA                                                                      >  SRR4302547.814844/1‑94 (MQ=60)
                       TTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGAC                                                                     >  SRR4302547.3456758/1‑94 (MQ=60)
                       TTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGAC                                                                     >  SRR4302547.443375/1‑94 (MQ=60)
                       TTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGAC                                                                     <  SRR4302547.436792/94‑1 (MQ=60)
                        TGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACC                                                                    >  SRR4302547.151727/1‑94 (MQ=60)
                        TGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACC                                                                    >  SRR4302547.6447010/1‑94 (MQ=60)
                         GACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCG                                                                   >  SRR4302547.293114/1‑94 (MQ=60)
                         GACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCG                                                                   <  SRR4302547.244718/94‑1 (MQ=60)
                          ACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGC                                                                  <  SRR4302547.852605/94‑1 (MQ=60)
                          ACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGC                                                                  >  SRR4302547.5255215/1‑94 (MQ=60)
                             TACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGA                                                               >  SRR4302547.1171149/1‑94 (MQ=60)
                             TACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGA                                                               >  SRR4302547.6725322/1‑94 (MQ=60)
                              ACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGAT                                                              >  SRR4302547.4692789/1‑94 (MQ=60)
                               CGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATC                                                             <  SRR4302547.1868345/94‑1 (MQ=60)
                               CGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATC                                                             <  SRR4302547.6483564/94‑1 (MQ=60)
                               CGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATC                                                             >  SRR4302547.1349917/1‑94 (MQ=60)
                                GTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCA                                                            >  SRR4302547.1641432/1‑94 (MQ=60)
                                 TCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCAT                                                           <  SRR4302547.1662730/94‑1 (MQ=60)
                                 TCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCAT                                                           >  SRR4302547.6005353/1‑94 (MQ=60)
                                  CGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATA                                                          >  SRR4302547.2004621/1‑94 (MQ=60)
                                  CGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATA                                                          <  SRR4302547.240604/94‑1 (MQ=60)
                                   GAAAATACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAG                                                         <  SRR4302547.3180193/94‑1 (MQ=60)
                                   GAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAG                                                         <  SRR4302547.1992365/94‑1 (MQ=60)
                                   GAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAG                                                         >  SRR4302547.3378777/1‑94 (MQ=60)
                                   GAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAG                                                         <  SRR4302547.5647503/94‑1 (MQ=60)
                                   GAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAG                                                         >  SRR4302547.2528087/1‑94 (MQ=60)
                                   GAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAG                                                         >  SRR4302547.6389915/1‑94 (MQ=60)
                                    AAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGC                                                        >  SRR4302547.1638611/1‑94 (MQ=60)
                                    AAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGC                                                        <  SRR4302547.3465558/94‑1 (MQ=60)
                                    AAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGC                                                        >  SRR4302547.3904306/1‑94 (MQ=60)
                                     AAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCC                                                       <  SRR4302547.1501354/94‑1 (MQ=60)
                                     AAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCC                                                       >  SRR4302547.6078189/1‑94 (MQ=60)
                                      AAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCT                                                      <  SRR4302547.5463153/94‑1 (MQ=60)
                                       AGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTA                                                     >  SRR4302547.4075479/1‑94 (MQ=60)
                                         ACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAA                                                   >  SRR4302547.4770380/1‑94 (MQ=60)
                                         ACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAA                                                   <  SRR4302547.1056796/94‑1 (MQ=60)
                                           CCTGCTTGCGGGTGACGCCCGCACTGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCCCAACGATCGGGACCGCGGATCATCGCCTAAACT                                                 >  SRR4302547.3712321/1‑94 (MQ=59)
                                           CCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACT                                                 >  SRR4302547.3714935/1‑94 (MQ=60)
                                           CCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACT                                                 <  SRR4302547.2026595/94‑1 (MQ=60)
                                           CCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACT                                                 >  SRR4302547.4139244/1‑94 (MQ=60)
                                           CCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACT                                                 <  SRR4302547.2873458/94‑1 (MQ=60)
                                            CTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTG                                                >  SRR4302547.804825/1‑94 (MQ=60)
                                             TGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGC                                               >  SRR4302547.1788936/1‑94 (MQ=60)
                                              GCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCG                                              <  SRR4302547.3297445/94‑1 (MQ=60)
                                              GCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCC                                              <  SRR4302547.4701816/94‑1 (MQ=60)
                                               CTTGAGGGTGACGCCCGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGC                                             <  SRR4302547.3800024/94‑1 (MQ=60)
                                               CTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATGGGGACCGCGGATCATAGCCTAAACTGCGC                                             >  SRR4302547.4316585/1‑94 (MQ=60)
                                               CTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGC                                             >  SRR4302547.4473945/1‑94 (MQ=60)
                                               CTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGC                                             >  SRR4302547.821871/1‑94 (MQ=60)
                                               CTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGC                                             <  SRR4302547.6423223/94‑1 (MQ=60)
                                               CTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGC                                             <  SRR4302547.4993105/94‑1 (MQ=60)
                                               CTTGAGGGTAACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGC                                             <  SRR4302547.5189304/94‑1 (MQ=60)
                                                TTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCA                                            >  SRR4302547.2887331/1‑94 (MQ=60)
                                                  GAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAG                                          <  SRR4302547.372423/94‑1 (MQ=60)
                                                   AGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGA                                         >  SRR4302547.509481/1‑94 (MQ=60)
                                                   AGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGA                                         >  SRR4302547.5884147/1‑94 (MQ=60)
                                                   AGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGA                                         >  SRR4302547.3745150/1‑94 (MQ=60)
                                                    GGGTGACGCACGACCCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAG                                        <  SRR4302547.6247749/94‑1 (MQ=60)
                                                      GTGACGCACTAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAT                                      <  SRR4302547.2148776/94‑1 (MQ=60)
                                                      GTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAT                                      <  SRR4302547.556222/94‑1 (MQ=60)
                                                      GTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAT                                      <  SRR4302547.839970/94‑1 (MQ=60)
                                                       TGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATT                                     >  SRR4302547.3507961/1‑94 (MQ=60)
                                                       TGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATC                                     <  SRR4302547.1289508/94‑1 (MQ=60)
                                                       TGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATC                                     <  SRR4302547.1377699/94‑1 (MQ=60)
                                                        GACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCT                                    <  SRR4302547.5158486/94‑1 (MQ=60)
                                                        GACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCT                                    >  SRR4302547.3104005/1‑94 (MQ=60)
                                                        GACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCT                                    <  SRR4302547.1535758/94‑1 (MQ=60)
                                                         ACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTT                                   <  SRR4302547.5278554/94‑1 (MQ=60)
                                                          CGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTC                                  <  SRR4302547.4635208/94‑1 (MQ=60)
                                                          CGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTC                                  >  SRR4302547.1387914/1‑94 (MQ=60)
                                                           GCACGAACGGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCT                                 <  SRR4302547.5072492/94‑1 (MQ=60)
                                                           GCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCT                                 >  SRR4302547.2885223/1‑94 (MQ=60)
                                                           GCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCT                                 >  SRR4302547.3915585/1‑94 (MQ=60)
                                                           GCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCT                                 >  SRR4302547.316047/1‑94 (MQ=60)
                                                           GCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCT                                 <  SRR4302547.1785596/94‑1 (MQ=60)
                                                            CACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCTGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTG                                >  SRR4302547.3370403/1‑94 (MQ=60)
                                                            CACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGCTCATAGCCTACACTTCGCAAGAGATCTTCTG                                >  SRR4302547.3450043/1‑94 (MQ=60)
                                                            CACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTG                                <  SRR4302547.6396663/94‑1 (MQ=60)
                                                            CACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTG                                >  SRR4302547.6018796/1‑94 (MQ=60)
                                                            CACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTG                                <  SRR4302547.1950522/94‑1 (MQ=60)
                                                            CACGAACCGCTGTCTGCGGTTATATGCCCGCTCAAGCTCCTGCAAAACGATCGGGACGGCGGATCATAGCCTACACTGCGCAAGAGATCTcttg                                >  SRR4302547.3121262/1‑90 (MQ=60)
                                                             ACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGT                               >  SRR4302547.3872169/1‑94 (MQ=60)
                                                              CGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTT                              >  SRR4302547.3192622/1‑94 (MQ=60)
                                                              CGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTT                              >  SRR4302547.5183398/1‑94 (MQ=60)
                                                              CGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTT                              >  SRR4302547.5951972/1‑94 (MQ=60)
                                                              CGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTT                              >  SRR4302547.2670406/1‑94 (MQ=60)
                                                              CGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTT                              >  SRR4302547.2076440/1‑94 (MQ=60)
                                                               GAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTT                             >  SRR4302547.2822193/1‑94 (MQ=60)
                                                               GAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTT                             >  SRR4302547.3916965/1‑94 (MQ=60)
                                                               GAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTT                             >  SRR4302547.4827637/1‑94 (MQ=60)
                                                                AACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTC                            >  SRR4302547.403606/1‑94 (MQ=60)
                                                                AACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTC                            >  SRR4302547.208640/1‑94 (MQ=60)
                                                                AACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTC                            >  SRR4302547.2387267/1‑94 (MQ=60)
                                                                AACCGCCGTCTGTTGTTAAATGCCCGATCAAGAACATGCAAAACGATCGAAACCGCGAATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTC                            <  SRR4302547.6007738/94‑1 (MQ=39)
                                                                 ACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCT                           >  SRR4302547.5618409/1‑94 (MQ=60)
                                                                 ACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCT                           <  SRR4302547.4581722/94‑1 (MQ=60)
                                                                    GCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCAC                        <  SRR4302547.761247/94‑1 (MQ=60)
                                                                    GCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCAC                        <  SRR4302547.538729/94‑1 (MQ=60)
                                                                    GCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCAC                        <  SRR4302547.4314021/94‑1 (MQ=60)
                                                                     CTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACA                       >  SRR4302547.3809033/1‑94 (MQ=60)
                                                                     CTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACA                       >  SRR4302547.623845/1‑94 (MQ=60)
                                                                      TGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGAGCAAGAGATCTTCTGTTTCTCACAG                      >  SRR4302547.1773681/1‑94 (MQ=60)
                                                                       GTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGA                     <  SRR4302547.4518853/94‑1 (MQ=60)
                                                                       GTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGA                     >  SRR4302547.1335363/1‑94 (MQ=60)
                                                                       GTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGA                     <  SRR4302547.3973968/94‑1 (MQ=60)
                                                                        TCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGAT                    >  SRR4302547.116971/1‑94 (MQ=60)
                                                                         CTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATT                   >  SRR4302547.3220517/1‑94 (MQ=60)
                                                                         CTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATT                   <  SRR4302547.457433/94‑1 (MQ=60)
                                                                           GCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTT                 <  SRR4302547.3292464/94‑1 (MQ=60)
                                                                           GCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTT                 <  SRR4302547.1454669/94‑1 (MQ=60)
                                                                           GCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTT                 <  SRR4302547.5630197/94‑1 (MQ=60)
                                                                           GCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTT                 <  SRR4302547.3018076/94‑1 (MQ=60)
                                                                           GCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTT                 <  SRR4302547.2555444/94‑1 (MQ=60)
                                                                            CGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTC                >  SRR4302547.1668294/1‑94 (MQ=60)
                                                                             GGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCC               >  SRR4302547.3449979/1‑94 (MQ=60)
                                                                              GTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCC              <  SRR4302547.5104433/94‑1 (MQ=60)
                                                                              GTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCC              <  SRR4302547.39906/94‑1 (MQ=60)
                                                                               TTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCG             <  SRR4302547.1969731/94‑1 (MQ=60)
                                                                                TATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGA            <  SRR4302547.5063656/94‑1 (MQ=60)
                                                                                 ATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGAT           >  SRR4302547.4290000/1‑94 (MQ=60)
                                                                                  TATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATT          <  SRR4302547.20709/94‑1 (MQ=60)
                                                                                  TATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATT          >  SRR4302547.3295269/1‑94 (MQ=60)
                                                                                  TATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATT          >  SRR4302547.3359965/1‑94 (MQ=60)
                                                                                   ATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTT         <  SRR4302547.95620/94‑1 (MQ=60)
                                                                                   ATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTT         >  SRR4302547.4523136/1‑94 (MQ=60)
                                                                                    TGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTA        <  SRR4302547.6179422/94‑1 (MQ=60)
                                                                                     GCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGGCTAAACTGCGCAAGAGAGCTTCTGTTTCTCACAGATTTTCCCGATTTAT       >  SRR4302547.1532694/1‑94 (MQ=60)
                                                                                     GCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTAT       <  SRR4302547.6452659/94‑1 (MQ=60)
                                                                                      CCCGATCAAGATCCTGCAAAACGATCGTGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATC      <  SRR4302547.655549/94‑1 (MQ=60)
                                                                                      CCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATC      >  SRR4302547.6305843/1‑94 (MQ=60)
                                                                                       CCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCC     >  SRR4302547.259348/1‑94 (MQ=60)
                                                                                       CCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCC     <  SRR4302547.2540134/94‑1 (MQ=60)
                                                                                        CGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCA    <  SRR4302547.1841561/94‑1 (MQ=60)
                                                                                        CGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCA    >  SRR4302547.1927866/1‑94 (MQ=60)
                                                                                           ATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACA  >  SRR4302547.3043288/1‑94 (MQ=60)
                                                                                           |                                                                                             
TAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACA  >  NC_000913/3881392‑3881576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: