Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,008,429 +TG coding (512/516 nt) b4555 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,008,4291.T100.0% 402.9 / NA 103L171? (TTG→TNG) b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (50/53);  total (50/53)
*NC_0009134,008,4292.G100.0% 381.7 / NA 103L171W (TTG→TGG) b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (50/53);  total (50/53)

Only 100 of 114 total aligned reads displayed.

TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGAA‑A‑GCTGCATTATGGGCAGTGGCCACCAGCGTCT  >  NC_000913/4008346‑4008503
                                                                                             ||                                                                              
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                                                                  <  2:4914229/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                                                                  <  1:331985/93‑1 (MQ=255)
gcTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                                                                  <  2:5534677/92‑1 (MQ=255)
 cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                                                                 <  2:319787/93‑2 (MQ=255)
  tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                                                                >  1:4871574/1‑91 (MQ=255)
  tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                                                                <  2:3292773/93‑3 (MQ=255)
  tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                                                                >  1:3384016/1‑91 (MQ=255)
   ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                                                                               <  2:1557450/93‑4 (MQ=255)
   ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                                                                               <  1:3734430/93‑4 (MQ=255)
   ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                                                                               <  1:3471573/93‑4 (MQ=255)
    gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                                                                              <  1:3269554/93‑5 (MQ=255)
          aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTTGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                                                                        <  1:957240/93‑1 (MQ=255)
           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa                                                                       <  1:539810/93‑1 (MQ=255)
           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa                                                                       <  1:16581/93‑1 (MQ=255)
            ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                                                                      <  1:6563452/93‑1 (MQ=255)
            ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                                                                      >  1:5815569/1‑93 (MQ=255)
             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                                                                     <  2:3648182/93‑1 (MQ=255)
             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                                                                     <  2:1546388/93‑1 (MQ=255)
              cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa                                                                    <  1:3357011/93‑1 (MQ=255)
              cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa                                                                    <  2:1029616/93‑1 (MQ=255)
              cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa                                                                    <  2:2113890/93‑1 (MQ=255)
              cgggcggCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa                                                                    <  1:3850589/93‑1 (MQ=255)
               gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                                                                   >  1:2868340/1‑93 (MQ=255)
               gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                                                                   <  2:5018768/93‑1 (MQ=255)
               gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGACGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                                                                   <  1:6590612/93‑1 (MQ=255)
               gggcggCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                                                                   <  1:640121/93‑1 (MQ=255)
                ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                                                                  <  2:1230472/93‑1 (MQ=255)
                ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                                                                  <  1:5164645/93‑1 (MQ=255)
                ggcggcGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                                                                  <  1:2495697/93‑1 (MQ=255)
                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                                                                >  2:4460263/1‑93 (MQ=255)
                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                                                                <  2:3877043/93‑1 (MQ=255)
                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                                                               >  1:3243243/1‑93 (MQ=255)
                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                                                               >  1:719342/1‑93 (MQ=255)
                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                                                               >  1:1088395/1‑93 (MQ=255)
                    gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg                                                              >  2:1243433/1‑93 (MQ=255)
                    gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg                                                              <  2:4099197/93‑1 (MQ=255)
                    gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg                                                              >  1:1602972/1‑93 (MQ=255)
                     cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc                                                             <  2:135642/93‑1 (MQ=255)
                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc                                                            >  2:2129041/1‑93 (MQ=255)
                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc                                                            >  2:4017554/1‑93 (MQ=255)
                        ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGa                                                          >  2:5182062/5‑93 (MQ=255)
                         tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa                                                         >  1:6170953/4‑93 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGGAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       >  2:475187/2‑93 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       >  2:471692/2‑93 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       <  2:2824228/92‑1 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       <  2:1296372/92‑1 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       >  2:3279343/2‑93 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       <  2:699680/92‑1 (MQ=255)
                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                                       >  1:3982457/2‑93 (MQ=255)
                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                                      <  2:4562784/93‑1 (MQ=255)
                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                                      >  1:3713536/1‑93 (MQ=255)
                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                                      <  1:3753164/93‑1 (MQ=255)
                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                     <  2:1081314/93‑1 (MQ=255)
                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                     <  1:6247142/93‑1 (MQ=255)
                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                     >  1:5593409/1‑93 (MQ=255)
                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                     <  2:1275383/93‑1 (MQ=255)
                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                     >  2:61358/1‑93 (MQ=255)
                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                                     <  2:3172029/93‑1 (MQ=255)
                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    >  1:1105466/1‑93 (MQ=255)
                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    >  1:1299549/1‑93 (MQ=255)
                               ggCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg                                                   <  2:1061970/93‑1 (MQ=255)
                                                            actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATggg                    <  2:2071073/89‑1 (MQ=255)
                                                            actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATggg                    <  2:1883660/89‑1 (MQ=255)
                                                            actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATggg                    >  1:409368/5‑93 (MQ=255)
                                                            actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATggg                    <  2:2992138/89‑1 (MQ=255)
                                                             ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGc                   <  2:4408754/90‑1 (MQ=255)
                                                             ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGc                   >  1:4536471/4‑93 (MQ=255)
                                                              tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCa                  >  2:713210/3‑93 (MQ=255)
                                                               gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAg                 <  2:2523121/92‑1 (MQ=255)
                                                               gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAg                 <  1:2402609/92‑1 (MQ=255)
                                                               gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAg                 >  1:2237345/2‑93 (MQ=255)
                                                               gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAg                 >  2:3677025/2‑93 (MQ=255)
                                                                ggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGt                >  2:6397383/1‑93 (MQ=255)
                                                                 gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTg               <  1:2520996/93‑1 (MQ=255)
                                                                 gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTg               >  2:786339/1‑93 (MQ=255)
                                                                  cTACAGCCTGAAGGATTGTATTGCGTTTGGTGGCGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTgc              <  2:1228998/93‑2 (MQ=255)
                                                                  cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTgc              <  2:795572/93‑2 (MQ=255)
                                                                   tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTgcg             >  2:3897677/1‑91 (MQ=255)
                                                                   tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTgcg             >  2:3111292/1‑91 (MQ=255)
                                                                   tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTgcg             >  1:5281202/1‑91 (MQ=255)
                                                                   tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTgcg             >  2:1902341/1‑91 (MQ=255)
                                                                       gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGGAA‑G‑GCTGGATTATGGGCAGTGCgcacc         >  1:5604860/3‑93 (MQ=255)
                                                                       gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGGAA‑G‑GCTGCATTATGGGCAGTGCgcacc         >  1:5931997/3‑93 (MQ=255)
                                                                       gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCgcacc         >  2:3643001/3‑93 (MQ=255)
                                                                       gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCgcacc         >  2:5720606/3‑93 (MQ=255)
                                                                       gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCgcacc         >  2:5136573/3‑93 (MQ=255)
                                                                         cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGGAACG‑GCTGCATTATGGGCAGAGCgcacca        >  2:856378/1‑93 (MQ=255)
                                                                         cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAg       <  1:4041548/93‑1 (MQ=255)
                                                                         cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAg       <  1:5836693/93‑1 (MQ=255)
                                                                          tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGc      <  1:5078385/93‑1 (MQ=255)
                                                                          tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGc      >  2:2011403/1‑93 (MQ=255)
                                                                          tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGc      >  1:866450/1‑93 (MQ=255)
                                                                           gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCg     <  2:410613/93‑1 (MQ=255)
                                                                           gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCg     >  2:3864395/1‑93 (MQ=255)
                                                                           gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCg     >  1:4902761/1‑93 (MQ=255)
                                                                             aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGTCAGTGCGCACCAGCGtt   >  1:1197039/1‑92 (MQ=255)
                                                                             aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTc   <  1:4343559/93‑1 (MQ=255)
                                                                             aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTc   <  1:5924210/93‑1 (MQ=255)
                                                                             aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTc   >  1:1838594/1‑93 (MQ=255)
                                                                             aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTc   <  2:4593789/93‑1 (MQ=255)
                                                                                             ||                                                                              
TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGAA‑A‑GCTGCATTATGGGCAGTGGCCACCAGCGTCT  >  NC_000913/4008346‑4008503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A