Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,472,408 A→G intergenic (+117/‑28) b4251 → / → b4252 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,472,4080AG100.0% 1098.4 / NA 293intergenic (+117/‑28)b4251/b4252hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (163/130);  total (163/130)

Only 100 of 298 total aligned reads displayed.

AAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAACGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGAT  >  NC_000913/4472318‑4472497
                                                                                          |                                                                                         
 aGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCgt                                                                                        <  2:1883817/93‑1 (MQ=255)
  gcgcCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCgtt                                                                                       >  1:4784138/1‑93 (MQ=255)
   cgcCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCTGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCgttg                                                                                      <  2:4667366/93‑1 (MQ=255)
   cgcCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCgttg                                                                                      >  2:702966/1‑93 (MQ=255)
    gcCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCgttgt                                                                                     >  1:3715078/1‑93 (MQ=255)
    gcCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCgttgt                                                                                     >  1:3643707/1‑93 (MQ=255)
    cccTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCgttgt                                                                                     <  1:1938249/92‑1 (MQ=255)
      cTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGttt                                                                                   >  2:3359878/1‑93 (MQ=255)
             tAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTttaattaa                                                                            <  2:5613020/93‑1 (MQ=255)
             tAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTttaattaa                                                                            <  1:1788748/93‑1 (MQ=255)
               aGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAgg                                                                          >  2:5241611/1‑93 (MQ=255)
               aGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAgg                                                                          >  2:871474/1‑93 (MQ=255)
                gTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGa                                                                         >  1:5139743/1‑93 (MQ=255)
                gTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGa                                                                         >  2:4562290/1‑93 (MQ=255)
                attGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATATTTTCGTATAACCATAGAAATGAAGCGTTGTTTTAATTAAGGa                                                                         <  2:577240/92‑1 (MQ=255)
                  tgtgATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGt                                                                       <  1:3414559/93‑1 (MQ=255)
                   gtgATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTg                                                                      >  2:2585382/1‑93 (MQ=255)
                   gtgATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTg                                                                      <  2:6203525/93‑1 (MQ=255)
                    tgATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTgg                                                                     >  2:1328871/1‑93 (MQ=255)
                    tgATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTgg                                                                     <  1:5535108/93‑1 (MQ=255)
                    tgATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTgg                                                                     <  1:4220905/93‑1 (MQ=255)
                     gATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGa                                                                    >  1:5351627/1‑93 (MQ=255)
                       tAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGACATGAAGCGTTGTTTTAATTAAGGAGTGGaaa                                                                  >  2:3555582/1‑93 (MQ=255)
                       tAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGaaa                                                                  <  1:3316904/93‑1 (MQ=255)
                       tAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGaaa                                                                  >  1:1716875/1‑93 (MQ=255)
                       tAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGaaa                                                                  >  2:6621308/1‑93 (MQ=255)
                        aaGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGaaaa                                                                 <  2:2792837/93‑1 (MQ=255)
                         aGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAg                                                                >  1:6208065/1‑93 (MQ=255)
                          gACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAga                                                               >  2:4736524/1‑93 (MQ=255)
                          gACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAga                                                               >  1:246896/1‑93 (MQ=255)
                           aCAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAgat                                                              <  2:3118865/93‑1 (MQ=255)
                            cAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAgatg                                                             >  2:4287880/1‑93 (MQ=255)
                            cAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAgatg                                                             <  1:1538090/93‑1 (MQ=255)
                             aataatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAgatga                                                            >  1:2382701/1‑93 (MQ=255)
                             aataatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAgatga                                                            <  2:4381965/93‑1 (MQ=255)
                             aataatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAgatga                                                            <  1:2935272/93‑1 (MQ=255)
                              ataatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAgatgat                                                           >  1:2165213/1‑93 (MQ=255)
                              ataatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGAGGAAAAgctgat                                                           >  1:5567531/1‑93 (MQ=255)
                                aatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGatca                                                         <  2:1037744/93‑1 (MQ=255)
                                aatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGatca                                                         >  1:1651161/1‑93 (MQ=255)
                                aatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGatca                                                         >  1:4443243/1‑93 (MQ=255)
                                  ttCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGatcatc                                                       <  1:6385137/93‑1 (MQ=255)
                                  ttCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGatcatc                                                       >  2:4913784/1‑93 (MQ=255)
                                  ttCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGatcatc                                                       >  2:3794720/1‑93 (MQ=255)
                                   tCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCg                                                      >  1:4551094/1‑93 (MQ=255)
                                   tCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCg                                                      <  2:2287721/93‑1 (MQ=255)
                                    cACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCgg                                                     <  2:3260150/93‑1 (MQ=255)
                                         gTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAata                                                <  1:1091804/93‑1 (MQ=255)
                                         gTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAata                                                >  1:5991437/1‑93 (MQ=255)
                                          ttAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAatat                                               >  2:5451951/1‑93 (MQ=255)
                                           tAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATAtt                                              >  2:4497656/1‑93 (MQ=255)
                                           tAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATAtt                                              >  1:6604103/1‑93 (MQ=255)
                                             aGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCa                                            >  2:4071984/1‑93 (MQ=255)
                                             aGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCa                                            >  1:1755593/1‑93 (MQ=255)
                                              ggCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCAt                                           <  1:1197404/93‑1 (MQ=255)
                                               gCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATa                                          >  1:2063122/1‑93 (MQ=255)
                                                cTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATaa                                         <  2:5088637/93‑1 (MQ=255)
                                                cTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATaa                                         <  1:2512017/93‑1 (MQ=255)
                                                   gCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCt                                      <  2:1942808/93‑1 (MQ=255)
                                                   gCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCt                                      <  2:5968371/93‑1 (MQ=255)
                                                   gCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCt                                      >  1:2713871/1‑93 (MQ=255)
                                                   gCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCt                                      <  2:5511118/93‑1 (MQ=255)
                                                   gCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCt                                      >  1:4297098/1‑93 (MQ=255)
                                                    cGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCtt                                     <  1:2645680/93‑1 (MQ=255)
                                                     ggAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTc                                    <  1:1971438/93‑1 (MQ=255)
                                                     ggAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTc                                    <  1:582481/93‑1 (MQ=255)
                                                      gAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCa                                   <  2:2115313/93‑1 (MQ=255)
                                                      gAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCa                                   >  1:4103874/1‑93 (MQ=255)
                                                      gAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCa                                   >  2:4458435/1‑93 (MQ=255)
                                                      gAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCa                                   >  1:4360126/1‑93 (MQ=255)
                                                       aaTTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAg                                  >  2:4015466/1‑93 (MQ=255)
                                                        aTTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGc                                 >  2:2705961/1‑93 (MQ=255)
                                                         ttGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGcc                                <  2:1810355/93‑1 (MQ=255)
                                                         ttGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGcc                                >  1:4738173/1‑93 (MQ=255)
                                                         ttGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGcc                                >  2:3028775/1‑93 (MQ=255)
                                                          tGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCg                               <  2:5686599/93‑1 (MQ=255)
                                                           gATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGt                              >  1:3123764/1‑93 (MQ=255)
                                                            aTTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTg                             <  2:478125/93‑1 (MQ=255)
                                                            aTTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTg                             >  2:2475944/1‑93 (MQ=255)
                                                             ttATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTgg                            >  2:3289848/1‑93 (MQ=255)
                                                             ttATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTgg                            >  2:4990192/1‑93 (MQ=255)
                                                                  ttttCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTAcc                       >  2:1670054/1‑93 (MQ=255)
                                                                   tttCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTAccc                      >  2:374907/1‑93 (MQ=255)
                                                                   tttCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTAccc                      >  2:2915362/1‑93 (MQ=255)
                                                                        tataACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGa                 >  1:3027579/1‑93 (MQ=255)
                                                                           aaCGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGtt              <  1:785179/93‑1 (MQ=255)
                                                                            aCGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTa             >  2:319504/1‑93 (MQ=255)
                                                                            aCGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTa             >  2:6589687/1‑93 (MQ=255)
                                                                             cGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTAc            <  1:4929911/93‑1 (MQ=255)
                                                                               aTAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGc          >  2:6421600/1‑93 (MQ=255)
                                                                                   aaaTGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAgg      <  1:6562354/93‑1 (MQ=255)
                                                                                   aaaTGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAgg      >  2:6284892/1‑93 (MQ=255)
                                                                                   aaaTGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAgg      <  1:296176/93‑1 (MQ=255)
                                                                                    aaTGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGc     >  2:614166/1‑93 (MQ=255)
                                                                                    aaTGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGc     >  2:3924092/1‑93 (MQ=255)
                                                                                     aTGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCg    <  2:1222471/93‑1 (MQ=255)
                                                                                     aTGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCg    >  2:1528938/1‑93 (MQ=255)
                                                                                       gAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGAt  >  2:6227881/1‑93 (MQ=255)
                                                                                       gAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGAt  >  2:966041/1‑93 (MQ=255)
                                                                                       gAAGCGTTGTTTGAATTAAGGAGAGGAAAAGATGATCATCGTAAATATTCATAATCTTCAGCCGTGGCTTCCCCAGGAGTTACGCCAGGCGAt  <  1:3819441/93‑1 (MQ=255)
                                                                                          |                                                                                         
AAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAACGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGAT  >  NC_000913/4472318‑4472497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAACGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAG  >  NC_000913/4472315‑4472501
                                                                                             |                                                                                             
GGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAG                                                                                               <  SRR4302547.944238/94‑1 (MQ=60)
GGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAG                                                                                               >  SRR4302547.4702501/1‑94 (MQ=60)
GAAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAG                                                                                               <  SRR4302547.1233187/94‑1 (MQ=60)
 GAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGC                                                                                              >  SRR4302547.3424914/1‑94 (MQ=60)
 GAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGC                                                                                              <  SRR4302547.1276496/94‑1 (MQ=60)
  AAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCG                                                                                             <  SRR4302547.1606883/94‑1 (MQ=60)
  AAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCG                                                                                             <  SRR4302547.377462/94‑1 (MQ=60)
   AAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGT                                                                                            >  SRR4302547.731237/1‑94 (MQ=60)
   AAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGT                                                                                            <  SRR4302547.6014719/94‑1 (MQ=60)
    AGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTT                                                                                           >  SRR4302547.4513680/1‑94 (MQ=60)
    AGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTT                                                                                           >  SRR4302547.4883222/1‑94 (MQ=60)
      CGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGT                                                                                         >  SRR4302547.3790908/1‑94 (MQ=60)
      CGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGT                                                                                         >  SRR4302547.6729558/1‑94 (MQ=60)
      CGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGT                                                                                         >  SRR4302547.3790907/1‑94 (MQ=60)
      CGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGT                                                                                         >  SRR4302547.3718020/1‑94 (MQ=60)
      CCCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGT                                                                                         <  SRR4302547.3443298/94‑1 (MQ=60)
       GCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTT                                                                                        >  SRR4302547.3411526/1‑94 (MQ=60)
       GCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTT                                                                                        >  SRR4302547.440501/1‑94 (MQ=60)
       CCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTT                                                                                        <  SRR4302547.1976691/94‑1 (MQ=60)
         CTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTT                                                                                      >  SRR4302547.554546/1‑94 (MQ=60)
         CTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTT                                                                                      >  SRR4302547.4318284/1‑94 (MQ=60)
          TGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTA                                                                                     <  SRR4302547.1580004/94‑1 (MQ=60)
            CCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAAT                                                                                   >  SRR4302547.5336441/1‑94 (MQ=60)
            CCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAAT                                                                                   >  SRR4302547.4834312/1‑94 (MQ=60)
            CCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAAT                                                                                   >  SRR4302547.907117/1‑94 (MQ=60)
             CGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATT                                                                                  >  SRR4302547.2671493/1‑94 (MQ=60)
                TAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAG                                                                               <  SRR4302547.1824158/94‑1 (MQ=60)
                TAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAG                                                                               <  SRR4302547.5209171/94‑1 (MQ=60)
                TAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAG                                                                               <  SRR4302547.1987648/94‑1 (MQ=60)
                 AAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGG                                                                              <  SRR4302547.1826627/94‑1 (MQ=60)
                 AAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGG                                                                              >  SRR4302547.1247132/1‑94 (MQ=60)
                  AGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGA                                                                             >  SRR4302547.5245626/1‑94 (MQ=60)
                    TTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGT                                                                           >  SRR4302547.1143807/1‑94 (MQ=60)
                    TTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGT                                                                           >  SRR4302547.385067/1‑94 (MQ=60)
                    TTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGT                                                                           >  SRR4302547.5656183/1‑94 (MQ=60)
                     TGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTG                                                                          <  SRR4302547.3484085/94‑1 (MQ=60)
                       TGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGA                                                                        <  SRR4302547.4307117/94‑1 (MQ=60)
                       TGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGA                                                                        >  SRR4302547.5461982/1‑94 (MQ=60)
                       TGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGA                                                                        <  SRR4302547.5649343/94‑1 (MQ=60)
                        GATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAA                                                                       <  SRR4302547.4632293/94‑1 (MQ=60)
                        GATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAA                                                                       <  SRR4302547.3344696/94‑1 (MQ=60)
                         ATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAA                                                                      >  SRR4302547.1750640/1‑94 (MQ=60)
                         ATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAA                                                                      >  SRR4302547.2821147/1‑94 (MQ=60)
                          TAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAA                                                                     <  SRR4302547.3383832/94‑1 (MQ=60)
                           AAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAG                                                                    >  SRR4302547.4024244/1‑94 (MQ=60)
                           AAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAG                                                                    >  SRR4302547.6336970/1‑94 (MQ=60)
                            AGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGA                                                                   >  SRR4302547.4764856/1‑94 (MQ=60)
                            AGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGA                                                                   >  SRR4302547.251507/1‑94 (MQ=60)
                             GACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGAT                                                                  <  SRR4302547.2532633/94‑1 (MQ=60)
                              ACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATG                                                                 <  SRR4302547.3753027/94‑1 (MQ=60)
                               CAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGA                                                                <  SRR4302547.1568705/94‑1 (MQ=60)
                               CAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGA                                                                >  SRR4302547.2430971/1‑94 (MQ=60)
                               CAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGA                                                                <  SRR4302547.1758947/94‑1 (MQ=60)
                               CAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGA                                                                >  SRR4302547.2746051/1‑94 (MQ=60)
                                AATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGAT                                                               <  SRR4302547.2993762/94‑1 (MQ=60)
                                AATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGAT                                                               >  SRR4302547.2129313/1‑94 (MQ=60)
                                AATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGAT                                                               >  SRR4302547.2208514/1‑94 (MQ=60)
                                AATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGAGGAAAAGCTGAT                                                               >  SRR4302547.5682336/1‑94 (MQ=60)
                                 ATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATC                                                              >  SRR4302547.1331105/1‑94 (MQ=60)
                                  TAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCA                                                             >  SRR4302547.4535144/1‑94 (MQ=60)
                                  TAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCA                                                             >  SRR4302547.1683743/1‑94 (MQ=60)
                                   AATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCAT                                                            <  SRR4302547.4898697/94‑1 (MQ=60)
                                     TTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCG                                                          >  SRR4302547.4468574/1‑94 (MQ=60)
                                     TTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCG                                                          >  SRR4302547.4645227/1‑94 (MQ=60)
                                     TTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCG                                                          <  SRR4302547.6518375/94‑1 (MQ=60)
                                          GCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAAT                                                     >  SRR4302547.6237619/1‑94 (MQ=60)
                                           CGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATA                                                    >  SRR4302547.6115745/1‑94 (MQ=60)
                                           CGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATA                                                    >  SRR4302547.6376433/1‑94 (MQ=60)
                                            GTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATAT                                                   <  SRR4302547.1113691/94‑1 (MQ=60)
                                             TTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATT                                                  >  SRR4302547.6741579/1‑94 (MQ=60)
                                             TTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATT                                                  >  SRR4302547.6741578/1‑94 (MQ=60)
                                               AAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCA                                                <  SRR4302547.5998304/94‑1 (MQ=60)
                                               AAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCA                                                >  SRR4302547.1790332/1‑94 (MQ=60)
                                                 GGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATA                                              <  SRR4302547.1221565/94‑1 (MQ=60)
                                                 GGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATA                                              >  SRR4302547.2104290/1‑94 (MQ=60)
                                                 GGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATA                                              <  SRR4302547.4874011/94‑1 (MQ=60)
                                                 GGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATA                                              >  SRR4302547.2071969/1‑94 (MQ=60)
                                                  GCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAA                                             >  SRR4302547.314050/1‑94 (MQ=60)
                                                   CTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAAT                                            >  SRR4302547.4055424/1‑94 (MQ=60)
                                                   CTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAAT                                            >  SRR4302547.2349848/1‑94 (MQ=60)
                                                   CTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAAT                                            <  SRR4302547.2562791/94‑1 (MQ=60)
                                                   CTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAAT                                            <  SRR4302547.175092/94‑1 (MQ=60)
                                                     AGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCT                                          <  SRR4302547.2548820/94‑1 (MQ=60)
                                                     AGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCT                                          >  SRR4302547.2768348/1‑94 (MQ=60)
                                                     AGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCT                                          >  SRR4302547.4385449/1‑94 (MQ=60)
                                                      GCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTT                                         <  SRR4302547.6739996/94‑1 (MQ=60)
                                                      GCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTT                                         >  SRR4302547.948786/1‑94 (MQ=60)
                                                      GCGAAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTT                                         <  SRR4302547.2582039/94‑1 (MQ=60)
                                                       CGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTC                                        <  SRR4302547.2698912/94‑1 (MQ=60)
                                                        GGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATACTCTTCA                                       >  SRR4302547.4218572/1‑94 (MQ=60)
                                                        GGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCA                                       >  SRR4302547.4449680/1‑94 (MQ=60)
                                                        GGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCA                                       <  SRR4302547.592950/94‑1 (MQ=60)
                                                        GGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCA                                       >  SRR4302547.2772567/1‑94 (MQ=60)
                                                        GGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCA                                       <  SRR4302547.1821137/94‑1 (MQ=60)
                                                        GGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCA                                       <  SRR4302547.2010588/94‑1 (MQ=60)
                                                        GGAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCA                                       >  SRR4302547.4187304/1‑94 (MQ=60)
                                                         GAATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAG                                      <  SRR4302547.3018987/94‑1 (MQ=60)
                                                          AATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGC                                     <  SRR4302547.3043165/94‑1 (MQ=60)
                                                          AATTGATTATCTATTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGC                                     >  SRR4302547.6554441/1‑94 (MQ=60)
                                                           ATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCC                                    >  SRR4302547.4836373/1‑94 (MQ=60)
                                                           ATTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCC                                    >  SRR4302547.1984052/1‑94 (MQ=60)
                                                            TTGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCG                                   <  SRR4302547.202977/94‑1 (MQ=60)
                                                             TGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGT                                  >  SRR4302547.3185723/1‑94 (MQ=60)
                                                             TGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGT                                  <  SRR4302547.2722277/94‑1 (MQ=60)
                                                             TGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGT                                  <  SRR4302547.1689877/94‑1 (MQ=60)
                                                             TGATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGT                                  >  SRR4302547.5698861/1‑94 (MQ=60)
                                                              GATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTG                                 <  SRR4302547.5612509/94‑1 (MQ=60)
                                                              GATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTG                                 >  SRR4302547.484238/1‑94 (MQ=60)
                                                              GATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTG                                 <  SRR4302547.3627796/94‑1 (MQ=60)
                                                               ATTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGG                                <  SRR4302547.2506417/94‑1 (MQ=60)
                                                                TTATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGC                               <  SRR4302547.1667425/94‑1 (MQ=60)
                                                                 TATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCT                              >  SRR4302547.299281/1‑94 (MQ=60)
                                                                 TATCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCT                              <  SRR4302547.4590690/94‑1 (MQ=60)
                                                                   TCTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTAC                            >  SRR4302547.1725214/1‑94 (MQ=60)
                                                                    CTTTTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACC                           >  SRR4302547.5665165/1‑94 (MQ=60)
                                                                       TTCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCA                        >  SRR4302547.3702248/1‑94 (MQ=60)
                                                                        TCGTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAG                       <  SRR4302547.221403/94‑1 (MQ=60)
                                                                          GTATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGA                     >  SRR4302547.3087777/1‑94 (MQ=60)
                                                                           TATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAG                    <  SRR4302547.1815106/94‑1 (MQ=60)
                                                                           TATAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAG                    <  SRR4302547.216454/94‑1 (MQ=60)
                                                                              AACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTA                 <  SRR4302547.800031/94‑1 (MQ=60)
                                                                               ACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTAC                <  SRR4302547.426205/94‑1 (MQ=60)
                                                                               ACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTAGCTACCCCAGGAGTTAC                >  SRR4302547.3113349/1‑94 (MQ=60)
                                                                                CGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACG               <  SRR4302547.5032023/94‑1 (MQ=60)
                                                                                CGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACG               >  SRR4302547.3210708/1‑94 (MQ=60)
                                                                                  ATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCC             <  SRR4302547.5196107/94‑1 (MQ=60)
                                                                                   TAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCA            <  SRR4302547.3052440/94‑1 (MQ=60)
                                                                                   TAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCA            <  SRR4302547.6311649/94‑1 (MQ=60)
                                                                                   TAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCA            <  SRR4302547.1919896/94‑1 (MQ=60)
                                                                                   TAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCA            <  SRR4302547.5461907/94‑1 (MQ=60)
                                                                                    AGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAG           >  SRR4302547.3718842/1‑94 (MQ=60)
                                                                                    AGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAG           >  SRR4302547.2479641/1‑94 (MQ=60)
                                                                                    AGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAG           >  SRR4302547.5723815/1‑94 (MQ=60)
                                                                                    AGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTAACCCAGGAGTTACGCCAG           >  SRR4302547.4384476/1‑94 (MQ=60)
                                                                                      AAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGC         <  SRR4302547.6450677/94‑1 (MQ=60)
                                                                                      AAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGC         <  SRR4302547.6699006/94‑1 (MQ=60)
                                                                                      AAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGC         <  SRR4302547.301679/94‑1 (MQ=60)
                                                                                       AATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCG        >  SRR4302547.4934348/1‑94 (MQ=60)
                                                                                        ATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGA       <  SRR4302547.4389463/94‑1 (MQ=60)
                                                                                         TGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGAT      >  SRR4302547.655258/1‑94 (MQ=60)
                                                                                          GAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATT     >  SRR4302547.4885104/1‑94 (MQ=60)
                                                                                          GAAGCGTTGTTTGAATTAAGGAGAGGAAAAGATGATCATCGTAAATATTCATAATCTTCAGCCGTGGCTTCCCCAGGAGTTACGCCAGGCGATT     <  SRR4302547.3897270/94‑1 (MQ=60)
                                                                                             GCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAG  >  SRR4302547.4879433/1‑94 (MQ=60)
                                                                                             |                                                                                             
GGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTATAACGATAGAAATGAAACGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAG  >  NC_000913/4472315‑4472501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑