Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,531,089 |
T→C |
I88M (ATA→ATG) |
yjhQ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,531,089 | 0 | T | C | 89.3%
| 791.0
/ 68.5
| 272 | I88M (ATA→ATG) | yjhQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (11/18); new base C (109/134); total (120/152) |
| Fisher's exact test for biased strand distribution p-value = 5.55e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01 |
Only 100 of 281 total aligned reads displayed.
AGAACAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGC > NC_000913/4530997‑4531178
|
agaACAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGt < 1:1286375/93‑1 (MQ=255)
aaCAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCAt > 2:6415956/1‑93 (MQ=255)
aaCAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCAt < 2:2806465/93‑1 (MQ=255)
cAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGa > 2:2004260/1‑93 (MQ=255)
aaaaaCCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGAc < 2:5238437/93‑1 (MQ=255)
aaaaCCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGAcc > 1:6327137/1‑93 (MQ=255)
aaCCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGc > 2:5799758/1‑93 (MQ=255)
aaCCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGc > 1:4519758/1‑93 (MQ=255)
aCCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGCGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCTGCATGACCGcc > 1:2498414/1‑93 (MQ=255)
ccGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCa > 1:3486961/1‑93 (MQ=255)
gTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAgg > 1:3364587/1‑93 (MQ=255)
tCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAggg < 2:903710/93‑1 (MQ=255)
tCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAggg < 1:2231308/93‑1 (MQ=255)
cTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAgggg > 2:2475934/1‑93 (MQ=255)
cTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAgggg < 2:1100784/93‑1 (MQ=255)
cTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAgggg < 1:1139220/93‑1 (MQ=255)
tGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGa < 2:385299/93‑1 (MQ=255)
ggCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAg < 2:1811624/93‑1 (MQ=255)
ggCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAg > 1:3149187/1‑93 (MQ=255)
gCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGc < 1:1038914/93‑1 (MQ=255)
gCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGc > 1:3687475/1‑93 (MQ=255)
gCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGc < 1:1031430/93‑1 (MQ=255)
gCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAg > 1:1907528/1‑93 (MQ=255)
gCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAg < 2:3562531/93‑1 (MQ=255)
gCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAg > 1:711247/1‑93 (MQ=255)
cccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAgg < 2:5330164/93‑1 (MQ=255)
ccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCCTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGa > 1:211513/1‑93 (MQ=255)
cATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGAt > 2:3024241/1‑93 (MQ=255)
cATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGAt > 1:963937/1‑93 (MQ=255)
aTCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGAtg > 1:1715292/1‑93 (MQ=255)
tCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCTGCATGACCGCCAGGGGCGCGAGGAtgt > 1:4620079/1‑93 (MQ=255)
tCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGAtgt > 2:2300908/1‑93 (MQ=255)
aaCCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGc > 1:2844133/1‑93 (MQ=255)
cTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATc < 2:6494892/93‑1 (MQ=255)
tCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCa > 2:4315597/1‑93 (MQ=255)
aGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAAc > 1:5893454/1‑93 (MQ=255)
ggTTCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACg < 1:4113100/93‑1 (MQ=255)
ggTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACg > 1:5504399/1‑93 (MQ=255)
gTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACgg < 2:1441373/93‑1 (MQ=255)
tGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGt < 2:101590/93‑1 (MQ=255)
gCTCGATGCCAGTGCGTATCTACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTg < 2:4502325/93‑1 (MQ=255)
tCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGaa < 1:158695/93‑1 (MQ=255)
cGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAAt < 2:5628302/93‑1 (MQ=255)
cGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAAt > 1:5268371/1‑93 (MQ=255)
cGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAAt < 1:3558742/93‑1 (MQ=255)
aTGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATcc > 2:2987599/1‑93 (MQ=255)
aTGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTCAATcc > 1:854929/1‑93 (MQ=255)
aGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCAttta > 2:6382386/1‑92 (MQ=255)
aGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTtc > 2:4669219/1‑93 (MQ=255)
aGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTtc > 1:2701426/1‑93 (MQ=255)
tGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTtctc > 2:2632202/1‑93 (MQ=255)
cGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCCAGGATGTGCATCAACGGTGAATCCATTTCTCCt < 1:1110497/93‑1 (MQ=255)
gTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCtt < 2:494796/93‑1 (MQ=255)
tATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCttt < 1:4761936/93‑1 (MQ=255)
tATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCttt > 1:4206277/1‑93 (MQ=255)
tATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCttt < 2:1897640/93‑1 (MQ=255)
tCACCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGa < 2:2504189/93‑1 (MQ=255)
tCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGAGAATCCATTTCTCCTTTGa > 2:1539333/1‑93 (MQ=255)
cAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGaa < 1:5691190/93‑1 (MQ=255)
aaCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAg < 2:1723969/93‑1 (MQ=255)
ccGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGt < 2:1950873/93‑1 (MQ=255)
ccGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGt < 2:4359989/93‑1 (MQ=255)
ccGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGt < 2:2957172/93‑1 (MQ=255)
gTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTg > 2:6631833/1‑93 (MQ=255)
tcctccCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGc > 2:3232321/1‑93 (MQ=255)
cctccCACGCCCATCCCGTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGcc < 2:2170748/93‑1 (MQ=255)
ctccCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGccc > 1:4022965/1‑93 (MQ=255)
ctccCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGccc > 2:4165443/1‑93 (MQ=255)
cccACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCgg > 2:6123752/1‑93 (MQ=255)
ccACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCtgg > 2:598032/1‑93 (MQ=255)
ccACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCggg > 2:1342760/1‑93 (MQ=255)
ccACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCggg > 2:3726147/1‑93 (MQ=255)
cACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGt < 2:1190855/93‑1 (MQ=255)
aCGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGta > 2:4624035/1‑93 (MQ=255)
cGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaa < 2:5093960/93‑1 (MQ=255)
gCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaa < 1:2579912/93‑1 (MQ=255)
cccATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaat > 1:5192543/1‑93 (MQ=255)
ccATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaata < 1:6620175/93‑1 (MQ=255)
cATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaataa > 2:606260/1‑93 (MQ=255)
cATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaataa > 2:3347118/1‑93 (MQ=255)
tCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTaaataaaa > 1:6467316/1‑93 (MQ=255)
tCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTaaataaaa < 2:5725218/93‑1 (MQ=255)
cccTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTaaataaaat > 1:3077397/1‑93 (MQ=255)
ccTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTaaataaaata > 2:271245/1‑93 (MQ=255)
ccTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTaaataaaata > 1:4416381/1‑93 (MQ=255)
ccTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTaaataaaata < 2:6049859/93‑1 (MQ=255)
cTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAatat > 1:3970264/1‑93 (MQ=255)
ttGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATg < 1:5755192/93‑1 (MQ=255)
ttGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATg > 2:5482306/1‑93 (MQ=255)
ggTATTCCGGTATGACCGCCAAGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGcc < 2:739638/93‑1 (MQ=255)
ggTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGcc > 1:5088841/1‑93 (MQ=255)
gTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGccc > 1:6152240/1‑93 (MQ=255)
gTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGccc < 1:5569774/93‑1 (MQ=255)
tATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCg < 1:6221754/93‑1 (MQ=255)
tATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCg < 2:61978/93‑1 (MQ=255)
tATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCg < 1:2799120/93‑1 (MQ=255)
tATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCg < 1:2614190/93‑1 (MQ=255)
tATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCg < 2:2105922/93‑1 (MQ=255)
tCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACg > 2:807211/1‑93 (MQ=255)
ccGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACgg > 2:3211170/1‑93 (MQ=255)
|
AGAACAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGC > NC_000913/4530997‑4531178
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGAACAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTG > NC_000913/4530996‑4531182
|
GAGAACAAAAACGGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGC < SRR4302547.1654434/94‑1 (MQ=60)
GAGAACAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGC > SRR4302547.3488493/1‑94 (MQ=60)
AGAACAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTA < SRR4302547.1312278/94‑1 (MQ=60)
GAACAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTAT < SRR4302547.6355568/94‑1 (MQ=60)
GAACAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCAT < SRR4302547.5752462/94‑1 (MQ=60)
AAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACC > SRR4302547.6458717/1‑94 (MQ=60)
AAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACC < SRR4302547.2870391/94‑1 (MQ=60)
AAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGC > SRR4302547.4613136/1‑94 (MQ=60)
AACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCC < SRR4302547.4177592/94‑1 (MQ=60)
AACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGCGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCTGCATGACCGCC > SRR4302547.2548885/1‑94 (MQ=60)
ACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCA > SRR4302547.3558103/1‑94 (MQ=60)
CGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGG > SRR4302547.3432909/1‑94 (MQ=60)
CGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGG < SRR4302547.4233347/94‑1 (MQ=60)
GTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGG < SRR4302547.3602778/94‑1 (MQ=60)
GTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGG < SRR4302547.1191875/94‑1 (MQ=60)
TCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGG < SRR4302547.2276283/94‑1 (MQ=60)
CTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGA < SRR4302547.1162228/94‑1 (MQ=60)
CTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCACTTGGTATTCCGGCATGACCGCCAGGGGA > SRR4302547.4543110/1‑94 (MQ=60)
TGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAG < SRR4302547.5621391/94‑1 (MQ=60)
TGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAG > SRR4302547.3211772/1‑94 (MQ=60)
GGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGC > SRR4302547.3762752/1‑94 (MQ=60)
GGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGC < SRR4302547.998281/94‑1 (MQ=60)
ggaaCCCATCAACCTCAGGAGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACCCCATTCCCTTGGTATTCCTGCATGACCGCCAGGGGAGCG < SRR4302547.2003083/90‑1 (MQ=60)
GCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCG < SRR4302547.1059385/94‑1 (MQ=60)
GCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCG < SRR4302547.1051708/94‑1 (MQ=60)
CAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGA > SRR4302547.754095/1‑94 (MQ=60)
aacacaccatcctccGGTGCTCGATGCCAGTGCTTATCCCCCGTCCCCACGCGCCCATCCCTTGGTATTCCGGCATCACCGCCAGGGGAGCGAG < SRR4302547.697986/79‑1 (MQ=37)
AGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAG > SRR4302547.3730666/1‑94 (MQ=60)
AGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAG > SRR4302547.724399/1‑94 (MQ=60)
AGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAG < SRR4302547.697987/94‑1 (MQ=60)
AGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAG > SRR4302547.1057674/1‑94 (MQ=60)
AGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAG > SRR4302547.1945277/1‑94 (MQ=60)
CCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCCTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGA > SRR4302547.215497/1‑94 (MQ=60)
CCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGAT > SRR4302547.982662/1‑94 (MQ=60)
CCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGAT > SRR4302547.5815386/1‑94 (MQ=60)
CATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATG > SRR4302547.2317357/1‑94 (MQ=60)
CATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATG > SRR4302547.1749019/1‑94 (MQ=60)
ATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCTGCATGACCGCCAGGGGCGCGAGGATGT > SRR4302547.4715746/1‑94 (MQ=60)
ATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGT > SRR4302547.4681612/1‑94 (MQ=60)
CAACGTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCGCATCCCTTGGTATTCCTGTATGACCGCCAGGGGAGCGAGGGTGGGC > SRR4302547.4786675/1‑94 (MQ=60)
CAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGC > SRR4302547.2900958/1‑94 (MQ=60)
AACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCA > SRR4302547.1988383/1‑94 (MQ=60)
CTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCA < SRR4302547.1258492/94‑1 (MQ=60)
CAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAAC > SRR4302547.6015470/1‑94 (MQ=60)
AGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACG > SRR4302547.5618050/1‑94 (MQ=60)
GGTTCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGG < SRR4302547.4196690/94‑1 (MQ=60)
GTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGT < SRR4302547.889426/94‑1 (MQ=60)
TGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTG < SRR4302547.2269758/94‑1 (MQ=60)
GCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGAGCATCAACGGTGA > SRR4302547.617259/1‑94 (MQ=60)
GCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGCTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGA < SRR4302547.6685621/94‑1 (MQ=60)
CTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAA < SRR4302547.2730441/94‑1 (MQ=60)
TCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCCTCAACGGTGAAT > SRR4302547.4166124/1‑94 (MQ=60)
TCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAAT < SRR4302547.161599/94‑1 (MQ=60)
TCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAAT > SRR4302547.5376909/1‑94 (MQ=60)
CGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATC > SRR4302547.4263725/1‑94 (MQ=60)
CGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATC < SRR4302547.3631368/94‑1 (MQ=60)
GATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTCAATCC > SRR4302547.871263/1‑94 (MQ=60)
ATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCA > SRR4302547.5624136/1‑94 (MQ=60)
TGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCAT < SRR4302547.109506/94‑1 (MQ=60)
TCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTT > SRR4302547.521758/1‑94 (MQ=60)
CCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTT < SRR4302547.4708718/94‑1 (MQ=60)
TAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTC > SRR4302547.2755644/1‑94 (MQ=60)
CAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTC < SRR4302547.4836213/94‑1 (MQ=60)
AGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCT > SRR4302547.593928/1‑94 (MQ=60)
AGTGCGTATCAACCGCCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCT < SRR4302547.4342651/94‑1 (MQ=60)
TGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCC < SRR4302547.1852293/94‑1 (MQ=60)
GCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCT < SRR4302547.2633944/94‑1 (MQ=60)
CGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCCAGGATGTGCATCAACGGTGAATCCATTTCTCCTT < SRR4302547.1132858/94‑1 (MQ=60)
GTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTT > SRR4302547.4292107/1‑94 (MQ=60)
TATCAACCGTCCTCCCCCGCCCATCCCTTGGTATTCCGTCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTG < SRR4302547.5780545/94‑1 (MQ=60)
TATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTG < SRR4302547.4860596/94‑1 (MQ=60)
TATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTG < SRR4302547.3338753/94‑1 (MQ=60)
ATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGA < SRR4302547.1140002/94‑1 (MQ=60)
TCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAA > SRR4302547.2606468/1‑94 (MQ=60)
TCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGATGAATCCATTTCTCCTTTGAA < SRR4302547.6534296/94‑1 (MQ=60)
tacCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAG < SRR4302547.2645755/91‑1 (MQ=60)
CAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAG < SRR4302547.5808725/94‑1 (MQ=60)
CAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAG < SRR4302547.2818292/94‑1 (MQ=60)
CAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAG < SRR4302547.4405727/94‑1 (MQ=60)
CAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAG < SRR4302547.1566378/94‑1 (MQ=60)
CAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAG < SRR4302547.881981/94‑1 (MQ=60)
ACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGT < SRR4302547.4086076/94‑1 (MQ=60)
ACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGT < SRR4302547.2211672/94‑1 (MQ=60)
CCGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTT < SRR4302547.358198/94‑1 (MQ=60)
CGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTG < SRR4302547.1088426/94‑1 (MQ=60)
CGTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTG > SRR4302547.3142963/1‑94 (MQ=60)
GTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGCGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGC > SRR4302547.1627346/1‑94 (MQ=60)
GTCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGC > SRR4302547.5269857/1‑94 (MQ=60)
TCCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCC > SRR4302547.6277596/1‑94 (MQ=60)
CCTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCC > SRR4302547.4104704/1‑94 (MQ=60)
CTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCG < SRR4302547.5367979/94‑1 (MQ=60)
CTCCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCG < SRR4302547.5439525/94‑1 (MQ=60)
CCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGG > SRR4302547.5078235/1‑94 (MQ=60)
CCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGG < SRR4302547.5088962/94‑1 (MQ=60)
CCCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGG < SRR4302547.3862689/94‑1 (MQ=60)
CCACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGT > SRR4302547.1852085/1‑94 (MQ=60)
CACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTA < SRR4302547.6344436/94‑1 (MQ=60)
CACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTA > SRR4302547.3663545/1‑94 (MQ=60)
ACGCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAA < SRR4302547.2696544/94‑1 (MQ=60)
GCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAAT > SRR4302547.5299411/1‑94 (MQ=60)
GCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAAT < SRR4302547.2474023/94‑1 (MQ=60)
GCCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAAT < SRR4302547.2631981/94‑1 (MQ=60)
cgtATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAAAA < SRR4302547.3221773/91‑1 (MQ=60)
CCCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATA > SRR4302547.406483/1‑94 (MQ=60)
CCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAA < SRR4302547.6757969/94‑1 (MQ=60)
CCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAA > SRR4302547.6679601/1‑94 (MQ=60)
CCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAA < SRR4302547.5462094/94‑1 (MQ=60)
CCATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAA > SRR4302547.1560500/1‑94 (MQ=60)
CATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAA < SRR4302547.3008089/94‑1 (MQ=60)
ATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAA < SRR4302547.2878468/94‑1 (MQ=60)
ATCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAA > SRR4302547.6601988/1‑94 (MQ=60)
TCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAAT > SRR4302547.6290091/1‑94 (MQ=60)
TCCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAAT > SRR4302547.3138517/1‑94 (MQ=60)
CCCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATA > SRR4302547.4507501/1‑94 (MQ=60)
CCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATAT < SRR4302547.3434076/94‑1 (MQ=60)
CCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATAT > SRR4302547.5858574/1‑94 (MQ=60)
CCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATAT > SRR4302547.4051017/1‑94 (MQ=60)
CCTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATAT < SRR4302547.734120/94‑1 (MQ=60)
CTTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATG > SRR4302547.2015917/1‑94 (MQ=60)
TTGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGC < SRR4302547.5874179/94‑1 (MQ=60)
TGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCC > SRR4302547.5193807/1‑94 (MQ=60)
TGGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCC < SRR4302547.3480842/94‑1 (MQ=60)
GGTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCC > SRR4302547.6279889/1‑94 (MQ=60)
GTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCG > SRR4302547.1144538/1‑94 (MQ=60)
GTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCCTCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCG > SRR4302547.5748665/1‑94 (MQ=60)
GTATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCG < SRR4302547.5684626/94‑1 (MQ=60)
TATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGA > SRR4302547.3210143/1‑94 (MQ=60)
TATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGA < SRR4302547.2666875/94‑1 (MQ=60)
TATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGA < SRR4302547.6362422/94‑1 (MQ=60)
TATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGA < SRR4302547.6350961/94‑1 (MQ=60)
TATTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGA < SRR4302547.2855168/94‑1 (MQ=60)
TTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACG < SRR4302547.6562312/94‑1 (MQ=60)
TTCCGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACG < SRR4302547.2774701/94‑1 (MQ=60)
CGGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCT > SRR4302547.210377/1‑94 (MQ=60)
GGCATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTT < SRR4302547.6156411/94‑1 (MQ=60)
CATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTG > SRR4302547.1402483/1‑94 (MQ=60)
|
GAGAACAAAAACCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTG > NC_000913/4530996‑4531182
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
