Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TG‑‑CTCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957454‑3957627
                                                                                             |                                                                                     
TGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC                                                                                       <  SRR4302547.3382526/94‑1 (MQ=60)
TGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC                                                                                       <  SRR4302547.4044399/94‑1 (MQ=60)
TGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC                                                                                       >  SRR4302547.5653223/1‑94 (MQ=60)
TGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC                                                                                       <  SRR4302547.5422041/94‑1 (MQ=60)
TGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCC                                                                                       >  SRR4302547.442445/1‑94 (MQ=60)
 GTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑G                                                                                    >  SRR4302547.5533461/1‑94 (MQ=60)
 GTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑G                                                                                    <  SRR4302547.431535/94‑1 (MQ=60)
 GTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATAGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑G                                                                                    <  SRR4302547.4240667/94‑1 (MQ=60)
  TCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GG                                                                                   <  SRR4302547.2313695/94‑1 (MQ=60)
  TCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GG                                                                                   <  SRR4302547.4183050/94‑1 (MQ=60)
  TCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GG                                                                                   <  SRR4302547.5731762/94‑1 (MQ=60)
  TCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GG                                                                                   <  SRR4302547.898416/94‑1 (MQ=60)
   CAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCcgg                                                                                    >  SRR4302547.2524600/1‑91 (MQ=60)
    CGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TGgc                                                                                 <  SRR4302547.1934834/94‑3 (MQ=60)
    AGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggc                                                                                   >  SRR4302547.3737273/1‑90 (MQ=60)
     GGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggct                                                                                  <  SRR4302547.4347772/94‑6 (MQ=60)
     GGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggct                                                                                  <  SRR4302547.956053/94‑6 (MQ=60)
      GCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggctt                                                                                 >  SRR4302547.668471/1‑88 (MQ=60)
      GCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggctt                                                                                 <  SRR4302547.3284439/94‑7 (MQ=60)
      GCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGCACATATATGGCAAAAGACCGGAAAATCCgggcct                                                                                 >  SRR4302547.1634046/1‑88 (MQ=60)
       CGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttc                                                                                <  SRR4302547.1734515/94‑8 (MQ=60)
       CGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttc                                                                                <  SRR4302547.3350317/94‑8 (MQ=60)
           GATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcag                                                                            >  SRR4302547.2924370/1‑83 (MQ=60)
            ATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcagg                                                                           <  SRR4302547.6620405/94‑13 (MQ=60)
             TTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcaggt                                                                          <  SRR4302547.2683578/94‑14 (MQ=60)
                TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcaggtccc                                                                       <  SRR4302547.4933618/94‑17 (MQ=60)
                 AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcaggtccct                                                                      >  SRR4302547.662371/1‑77 (MQ=60)
                 AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCCGAAAATCCgggcttcgcaggtccct                                                                      >  SRR4302547.329306/1‑77 (MQ=60)
                  GCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcaggtccctc                                                                     <  SRR4302547.2673127/94‑19 (MQ=60)
                  GCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGCGAGTGGCTGGTACCTATATTGCAAAAGGCCCGAAAATCCcggcttcccaagtccctc                                                                     >  SRR4302547.548012/1‑76 (MQ=60)
                    ATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcaggtccctcaa                                                                   <  SRR4302547.4914479/94‑21 (MQ=60)
                    ATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcaggtccctcaa                                                                   >  SRR4302547.1827856/1‑74 (MQ=60)
                     TGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcaggtccctcaag                                                                  <  SRR4302547.4195043/94‑22 (MQ=60)
                      GATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCgggcttcgcaggtccctcaagg                                                                 >  SRR4302547.2894021/1‑72 (MQ=60)
                        TCTGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGG                                                             <  SRR4302547.893775/94‑1 (MQ=60)
                        TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGG                                                             <  SRR4302547.2624105/94‑1 (MQ=60)
                        TCCGCAGATACTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGG                                                             <  SRR4302547.6732944/94‑1 (MQ=60)
                          CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAG                                                           <  SRR4302547.3197504/94‑1 (MQ=60)
                            CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAA                                                         >  SRR4302547.5894955/1‑94 (MQ=60)
                            CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCCAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAA                                                         >  SRR4302547.2309566/1‑94 (MQ=60)
                             AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA                                                        >  SRR4302547.5851493/1‑94 (MQ=60)
                             AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA                                                        >  SRR4302547.5662170/1‑94 (MQ=60)
                             AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAATCC‑‑GGGCTTCGCAGGTGCCTCAAGGGGAGAAA                                                        >  SRR4302547.2255773/1‑94 (MQ=60)
                             AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA                                                        >  SRR4302547.6241343/1‑94 (MQ=60)
                             AGATCCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGCCAAAACCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA                                                        <  SRR4302547.3930913/94‑1 (MQ=57)
                               ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAAC                                                      <  SRR4302547.1658572/94‑1 (MQ=60)
                                TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACT                                                     >  SRR4302547.3319253/1‑94 (MQ=60)
                                 GCTAACGTAATGGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAATTCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTT                                                    <  SRR4302547.5842366/94‑1 (MQ=60)
                                  CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTA                                                   >  SRR4302547.4670195/1‑94 (MQ=60)
                                  CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTA                                                   <  SRR4302547.1026327/94‑1 (MQ=60)
                                     ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGG                                                <  SRR4302547.6745386/94‑1 (MQ=60)
                                     ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGG                                                <  SRR4302547.1583123/94‑1 (MQ=60)
                                      CGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGTC‑‑TTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGC                                               <  SRR4302547.2087495/94‑1 (MQ=60)
                                          ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCT                                           <  SRR4302547.6277668/94‑1 (MQ=60)
                                           TTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTA                                          <  SRR4302547.2245494/94‑1 (MQ=60)
                                            TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAT                                         <  SRR4302547.5720335/94‑1 (MQ=60)
                                            TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGAAGAAAACTTAGGGCCTCTAT                                         <  SRR4302547.6597061/94‑1 (MQ=60)
                                             GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG                                        >  SRR4302547.1953503/1‑94 (MQ=60)
                                             GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG                                        >  SRR4302547.3411460/1‑94 (MQ=60)
                                              TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGG                                       <  SRR4302547.6742115/94‑1 (MQ=60)
                                              TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGG                                       <  SRR4302547.5882116/94‑1 (MQ=60)
                                                AGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGC                                     >  SRR4302547.1777130/1‑94 (MQ=60)
                                                 GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT                                    <  SRR4302547.418542/94‑1 (MQ=60)
                                                  TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCCAGGGGAGAAAACTTAGGGCCTCTATGGGCTA                                   >  SRR4302547.3984597/1‑94 (MQ=60)
                                                  TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTA                                   >  SRR4302547.6714792/1‑94 (MQ=60)
                                                   CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC                                  >  SRR4302547.1865986/1‑94 (MQ=60)
                                                   CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC                                  >  SRR4302547.6664352/1‑94 (MQ=60)
                                                   CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC                                  >  SRR4302547.5425470/1‑94 (MQ=60)
                                                       GAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAG                              >  SRR4302547.4567070/1‑94 (MQ=60)
                                                        AGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGT                             <  SRR4302547.824506/94‑1 (MQ=60)
                                                          TGTCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA                           <  SRR4302547.461064/94‑1 (MQ=60)
                                                          TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA                           >  SRR4302547.2767560/1‑94 (MQ=60)
                                                          TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA                           <  SRR4302547.3389640/94‑1 (MQ=60)
                                                          TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA                           <  SRR4302547.5750849/94‑1 (MQ=60)
                                                          TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA                           <  SRR4302547.6451498/94‑1 (MQ=60)
                                                          TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA                           >  SRR4302547.3571968/1‑94 (MQ=60)
                                                          TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA                           <  SRR4302547.6095717/94‑1 (MQ=60)
                                                           GGCTGTTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT                          <  SRR4302547.5880042/94‑1 (MQ=60)
                                                            GCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATT                         >  SRR4302547.6333544/1‑94 (MQ=60)
                                                              TGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT                       >  SRR4302547.1119370/1‑94 (MQ=60)
                                                               GGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC                      <  SRR4302547.5401775/94‑1 (MQ=60)
                                                               GGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC                      <  SRR4302547.6580279/94‑1 (MQ=60)
                                                                GTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCG                     <  SRR4302547.5649525/94‑1 (MQ=60)
                                                                  ACATATATGGCAAAAGCGGGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG                   <  SRR4302547.3651497/94‑1 (MQ=60)
                                                                  ACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG                   <  SRR4302547.582220/94‑1 (MQ=60)
                                                                   CATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG                  >  SRR4302547.1346109/1‑94 (MQ=60)
                                                                   CATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG                  <  SRR4302547.561569/94‑1 (MQ=60)
                                                                     TATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT                <  SRR4302547.6310699/94‑1 (MQ=60)
                                                                      ATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG               <  SRR4302547.1489071/94‑1 (MQ=60)
                                                                      ATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG               >  SRR4302547.3816666/1‑94 (MQ=60)
                                                                       TATGGCAAAAGCCAAGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG              <  SRR4302547.1059235/94‑1 (MQ=60)
                                                                         TGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTT            <  SRR4302547.5054815/94‑1 (MQ=60)
                                                                           GCAAAAGCGCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT          <  SRR4302547.5229566/94‑1 (MQ=60)
                                                                           GCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT          <  SRR4302547.6373442/94‑1 (MQ=60)
                                                                            CAAAAGCCGGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT         <  SRR4302547.5755769/94‑1 (MQ=60)
                                                                            CAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT         >  SRR4302547.5315208/1‑94 (MQ=60)
                                                                             AAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT        >  SRR4302547.3408177/1‑94 (MQ=60)
                                                                                 GCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT    <  SRR4302547.1295538/94‑1 (MQ=60)
                                                                                 GCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT    <  SRR4302547.1490522/94‑1 (MQ=60)
                                                                                  CCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG   >  SRR4302547.5211032/1‑94 (MQ=60)
                                                                                  CCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG   <  SRR4302547.2915016/94‑1 (MQ=60)
                                                                                  CCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG   >  SRR4302547.4196356/1‑94 (MQ=60)
                                                                                   CCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  SRR4302547.1083137/1‑94 (MQ=60)
                                                                                   CCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  <  SRR4302547.3444816/94‑1 (MQ=60)
                                                                                   CCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  <  SRR4302547.6023972/94‑1 (MQ=60)
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TGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TG‑‑CTCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957454‑3957627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑