Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATCTTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCA  >  NC_000913/4474756‑4474913
                                                                                              |                                                                            
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT                                                                              <  SRR4302547.3965271/94‑1 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT                                                                              <  SRR4302547.6705075/94‑1 (MQ=60)
  ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgt                                                                            >  SRR4302547.4590095/1‑92 (MQ=60)
  ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgt                                                                            <  SRR4302547.5459826/94‑3 (MQ=60)
     CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatt                                                                         >  SRR4302547.3402177/1‑89 (MQ=60)
     CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatt                                                                         >  SRR4302547.1981233/1‑89 (MQ=60)
     CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatt                                                                         >  SRR4302547.5539397/1‑89 (MQ=60)
     CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATATAATAATGTGATGCCGGGATGGTTTgtatt                                                                         >  SRR4302547.6668918/1‑89 (MQ=60)
       CCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttc                                                                       >  SRR4302547.1188701/1‑87 (MQ=60)
        CGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcc                                                                      >  SRR4302547.5263855/1‑86 (MQ=60)
         GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccg                                                                     >  SRR4302547.4774398/1‑85 (MQ=60)
         GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccc                                                                     <  SRR4302547.70041/94‑10 (MQ=60)
         GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATCTGATGCCGGGATGGTTTgtatttccc                                                                     >  SRR4302547.5468473/1‑85 (MQ=60)
          GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccg                                                                    <  SRR4302547.6027172/94‑11 (MQ=60)
          GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccg                                                                    <  SRR4302547.161717/94‑11 (MQ=60)
           AAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccgg                                                                   <  SRR4302547.4646055/94‑12 (MQ=60)
           AAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccgg                                                                   >  SRR4302547.3817346/1‑83 (MQ=60)
           AAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccgg                                                                   <  SRR4302547.3715812/94‑12 (MQ=60)
            AAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggc                                                                  >  SRR4302547.6070328/1‑82 (MQ=60)
            AAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggc                                                                  >  SRR4302547.5058561/1‑82 (MQ=60)
            AAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggc                                                                  >  SRR4302547.725837/1‑82 (MQ=60)
                TTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatct                                                              <  SRR4302547.616414/94‑17 (MQ=60)
                 TACGTATAGCAATAGAACACTTTGGGTGGAAGAATCGACCTATCACTGCATAAAATAATGTGATGCGGGGATGGTTTgtatttccagccatctt                                                             >  SRR4302547.1140300/1‑77 (MQ=60)
                 TACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt                                                             <  SRR4302547.4309786/94‑18 (MQ=60)
                  ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt                                                            >  SRR4302547.5816133/1‑76 (MQ=60)
                   CGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttta                                                           >  SRR4302547.5877617/1‑75 (MQ=60)
                    GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat                                                          <  SRR4302547.4210059/94‑21 (MQ=60)
                    GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat                                                          <  SRR4302547.3167762/94‑21 (MQ=60)
                    GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat                                                          <  SRR4302547.3075352/94‑21 (MQ=60)
                     TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata                                                         <  SRR4302547.2376466/94‑22 (MQ=60)
                      ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag                                                        <  SRR4302547.6565042/94‑23 (MQ=60)
                       TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc                                                       >  SRR4302547.5057223/1‑71 (MQ=60)
                       TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc                                                       >  SRR4302547.1598354/1‑71 (MQ=60)
                         GCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcga                                                     <  SRR4302547.2172520/94‑26 (MQ=60)
                          CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat                                                    >  SRR4302547.2417817/1‑68 (MQ=60)
                          CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat                                                    >  SRR4302547.5841031/1‑68 (MQ=60)
                          CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat                                                    >  SRR4302547.3902721/1‑68 (MQ=60)
                           AATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata                                                   >  SRR4302547.1194231/1‑67 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                  >  SRR4302547.2448870/1‑66 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                  <  SRR4302547.1125536/94‑29 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                  >  SRR4302547.1270973/1‑66 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                  <  SRR4302547.2039625/94‑29 (MQ=60)
                              AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatcgcgatagca                                                <  SRR4302547.6602794/94‑31 (MQ=60)
                              AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca                                                <  SRR4302547.3878611/94‑31 (MQ=60)
                              AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca                                                >  SRR4302547.4632860/1‑64 (MQ=60)
                              AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca                                                <  SRR4302547.2050486/94‑31 (MQ=60)
                              AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca                                                <  SRR4302547.3656485/94‑31 (MQ=60)
                                AACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat                                              >  SRR4302547.2945374/1‑62 (MQ=60)
                                AACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat                                              >  SRR4302547.5916758/1‑62 (MQ=60)
                                AACACTTTGGGGGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat                                              >  SRR4302547.6431926/1‑62 (MQ=60)
                                 ACACTTTGGGGGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatt                                             >  SRR4302547.5065698/1‑61 (MQ=60)
                                  CACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta                                            <  SRR4302547.4380818/94‑35 (MQ=60)
                                  CACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta                                            <  SRR4302547.545597/94‑35 (MQ=60)
                                  CACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta                                            >  SRR4302547.405586/1‑60 (MQ=60)
                                  CACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta                                            >  SRR4302547.355704/1‑60 (MQ=60)
                                   ACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat                                           >  SRR4302547.1769650/1‑59 (MQ=60)
                                   ACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat                                           >  SRR4302547.6324276/1‑59 (MQ=60)
                                   ACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat                                           >  SRR4302547.4410185/1‑59 (MQ=60)
                                    CTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatt                                          >  SRR4302547.3741625/1‑58 (MQ=60)
                                     TTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattt                                         <  SRR4302547.5762620/94‑38 (MQ=60)
                                        GGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact                                      >  SRR4302547.4564849/1‑54 (MQ=60)
                                        GGGCGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact                                      >  SRR4302547.2392459/1‑54 (MQ=60)
                                           TGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag                                   >  SRR4302547.3745448/1‑51 (MQ=60)
                                            GGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagc                                  >  SRR4302547.1724139/1‑50 (MQ=60)
                                            GGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagc                                  >  SRR4302547.827805/1‑50 (MQ=60)
                                             GAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcg                                 <  SRR4302547.4732600/94‑46 (MQ=60)
                                             GAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcg                                 >  SRR4302547.3558590/1‑49 (MQ=60)
                                              AAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgt                                >  SRR4302547.4559560/1‑48 (MQ=60)
                                               AGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtc                               >  SRR4302547.2346865/1‑47 (MQ=60)
                                               AGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtc                               >  SRR4302547.2657807/1‑47 (MQ=60)
                                                GAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCG                             >  SRR4302547.3602510/1‑94 (MQ=30)
                                                GAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCG                             >  SRR4302547.2724918/1‑94 (MQ=30)
                                                  ATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCG                           <  SRR4302547.1968575/94‑1 (MQ=26)
                                                    AGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGAC                         >  SRR4302547.5203257/1‑94 (MQ=23)
                                                    AGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGAC                         >  SRR4302547.6010941/1‑94 (MQ=23)
                                                    AGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGAC                         >  SRR4302547.1384358/1‑94 (MQ=23)
                                                      ACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCA                       >  SRR4302547.962300/1‑94 (MQ=23)
                                                       CCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCAT                      <  SRR4302547.5545493/94‑1 (MQ=23)
                                                        CTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATA                     >  SRR4302547.2121929/1‑94 (MQ=21)
                                                          ATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCAC                   >  SRR4302547.2794413/1‑94 (MQ=23)
                                                          ATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCAC                   >  SRR4302547.4563808/1‑94 (MQ=23)
                                                           TCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACC                  >  SRR4302547.1736114/1‑94 (MQ=23)
                                                            CACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCG                 <  SRR4302547.5292096/94‑1 (MQ=23)
                                                             ACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGC                >  SRR4302547.4615315/1‑94 (MQ=23)
                                                             ACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGC                >  SRR4302547.1431912/1‑94 (MQ=23)
                                                              CTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCT               <  SRR4302547.5020789/94‑1 (MQ=25)
                                                              CTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCT               >  SRR4302547.3438102/1‑94 (MQ=25)
                                                                 CATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTG            >  SRR4302547.5683741/1‑94 (MQ=30)
                                                                  ataAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGA           >  SRR4302547.1888056/4‑94 (MQ=33)
                                                                   taAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGAT          <  SRR4302547.5468146/92‑1 (MQ=34)
                                                                   AAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATA         <  SRR4302547.665297/94‑1 (MQ=36)
                                                                     AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAG        <  SRR4302547.2280010/94‑1 (MQ=38)
                                                                     AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAG        >  SRR4302547.4063796/1‑94 (MQ=38)
                                                                       AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT       <  SRR4302547.5844499/94‑1 (MQ=38)
                                                                           ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGC   <  SRR4302547.3369200/94‑1 (MQ=42)
                                                                            TGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCA  <  SRR4302547.546162/94‑1 (MQ=44)
                                                                                              |                                                                            
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATCTTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCA  >  NC_000913/4474756‑4474913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: