Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
343 |
268.7 |
10873516 |
97.0% |
10547310 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
1,920,794 |
G→T |
intergenic (‑423/+132) |
RPPX_08560 ← / ← RPPX_08565 |
16S ribosomal RNA/CoA‑transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 1,920,794 | 0 | G | T | 98.6%
| 160.6
/ ‑3.6
| 72 | intergenic (‑423/+132) | RPPX_08560/RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (31/40); total (31/41) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01 |
CTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑A‑‑CCTTCCGAATCGTCTAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCA > CP009974/1920691‑1920941
|
cTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TACCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgag < 1:2243879/151‑1 (MQ=11)
ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgaga > 2:4716883/1‑151 (MQ=2)
ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgaga < 1:3606830/151‑1 (MQ=2)
ggAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGACGTGGGGCGCATTATACGGGGATTCGAGAgg > 2:4451016/1‑151 (MQ=2)
ggAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAgg < 2:1026015/151‑1 (MQ=2)
ggAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAgg < 2:3060508/151‑1 (MQ=2)
gAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTTGAGAggg > 1:2175135/1‑151 (MQ=2)
gAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATGATAAGGGGATTGGAGCggg > 1:2175116/1‑151 (MQ=2)
aGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCg > 1:974192/1‑151 (MQ=2)
aGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCg < 1:1857849/151‑1 (MQ=11)
gcTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCa > 2:4412377/1‑151 (MQ=2)
gcTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCa < 2:1156168/151‑1 (MQ=2)
tGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTCG‑CTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAAc < 2:923169/151‑1 (MQ=2)
gTCCACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAAcc < 2:1789953/151‑1 (MQ=2)
cAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCtt < 2:1009439/151‑1 (MQ=2)
cAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCtt > 1:4597702/1‑151 (MQ=2)
cAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCtt > 2:4650512/1‑151 (MQ=2)
aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TATCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 2:3484699/151‑1 (MQ=2)
aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 2:461927/151‑1 (MQ=11)
aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 2:5227266/151‑1 (MQ=2)
aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 1:2547308/151‑1 (MQ=2)
aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 1:714560/151‑1 (MQ=2)
ccATCTTCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTaa < 1:4357038/151‑1 (MQ=2)
ccATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTaa > 1:972799/1‑151 (MQ=2)
tcatcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAttt < 2:2474804/151‑1 (MQ=2)
tcatcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAttt > 1:4022223/1‑151 (MQ=2)
tcatcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAttt < 2:3429108/151‑1 (MQ=2)
catcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTc > 1:5039975/1‑151 (MQ=2)
catcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTc < 1:415163/151‑1 (MQ=2)
atcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGCTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATCATAACGCGATTCGCTATGGCGTCAACCTTTAATTTCa > 2:3751597/1‑151 (MQ=2)
cactacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCt < 2:4660602/144‑1 (MQ=255)
actacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATTTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTc > 2:4695901/7‑151 (MQ=21)
actacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTTATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTc < 2:5231299/145‑1 (MQ=21)
ctacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcc < 2:153164/146‑1 (MQ=255)
ctacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcc > 1:4518252/6‑151 (MQ=255)
ctacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcc > 1:5067171/6‑151 (MQ=255)
cactttaCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGAGATTCGAGAGGGCGTCAAGCTTTAATTTCAATAACCGTTGATAGCACAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTccc < 2:3512838/145‑1 (MQ=21)
ccttAACTCATTGAATCTCAAGGAGTATTTCATACCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 2:2525626/148‑1 (MQ=21)
acttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 1:4463541/148‑1 (MQ=255)
acttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc > 2:2726395/4‑151 (MQ=255)
acgcaaCTCATTGAATCACAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGCGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 2:4819392/147‑1 (MQ=21)
accTAACTCATGGAATCTCAAGGAGTTTTTCGTTCCTATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 2:2829402/149‑1 (MQ=255)
tgaaCTCATTGAATCTCAAGGAGTTTTTCGTTCCGGTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGAGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGc < 2:3260942/149‑1 (MQ=255)
aCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAt > 1:4907401/1‑151 (MQ=255)
aCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAt > 1:3687562/1‑151 (MQ=255)
aCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAt < 2:4613580/151‑1 (MQ=255)
cTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAtt > 1:1265222/1‑151 (MQ=255)
tCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTc > 1:4615079/1‑151 (MQ=255)
ttGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATc > 1:2061870/1‑151 (MQ=255)
ttGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATc > 2:588341/1‑151 (MQ=255)
tGAATGTCAAGGAGTTTTTCGTTCCGATGTCGCGGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTGATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt < 2:5317872/151‑1 (MQ=255)
tGAATCTCAAGGAGTGTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt < 2:2399366/151‑1 (MQ=255)
gAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTAATAAAAAAAAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTa < 2:3928027/151‑1 (MQ=18)
aaTCTCAAGGAGTTTTGCGTTCCGAGGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTag < 2:3250990/151‑1 (MQ=255)
aTCTCGAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTaga < 1:265533/151‑1 (MQ=255)
aTCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTaga < 1:1090279/151‑1 (MQ=255)
aTCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTaga < 2:1403186/151‑1 (MQ=255)
aTCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTaga > 1:2186791/1‑151 (MQ=255)
tctcAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACACAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTagag > 2:3692263/1‑151 (MQ=255)
tcAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGca > 1:3132233/1‑151 (MQ=255)
tcAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGca < 1:3729773/151‑1 (MQ=255)
cAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGcac > 2:1051702/1‑151 (MQ=255)
cAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGcac > 1:2373197/1‑151 (MQ=255)
aaGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt < 2:4397733/143‑1 (MQ=255)
aaGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt > 1:4397733/1‑143 (MQ=255)
aaGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGcaca > 1:3180844/1‑151 (MQ=255)
ggAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACAcc < 1:1240480/151‑1 (MQ=255)
gAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCa > 1:2711864/1‑151 (MQ=255)
gAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGAAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCa < 2:619929/151‑1 (MQ=255)
aGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAg < 1:2092386/151‑1 (MQ=255)
aGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAg < 2:4487869/151‑1 (MQ=255)
gTTTTTCGTTCCGATATCGCTGGAAGTGGGGAGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCATTGAGAGCGCAGAAAAAACAAAGCGACGAGGCCTGACGGCCTCCCCGCTATCCATCTAGAGCACAccctc > 2:3804920/1‑148 (MQ=25)
ttttTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGca < 2:3032650/151‑1 (MQ=255)
|
CTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑A‑‑CCTTCCGAATCGTCTAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCA > CP009974/1920691‑1920941
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTGGCTCGCTGCGATCTCTCGTAGCGGGAGGCGAATCATACAGCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCA > CP009974/1920646‑1920944
|
TTGGCTCGCTGCGATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTC < SRR10918230.2729587/151‑1 (MQ=0)
GGCTCGCTGCGATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGT < SRR10918230.5360982/151‑1 (MQ=0)
GGCTCGCTGCGATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGT < SRR10918230.4924697/151‑1 (MQ=0)
CTCGCTGCGATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTC > SRR10918230.2828764/1‑151 (MQ=0)
CGCTGCGATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCG > SRR10918230.1931506/1‑151 (MQ=0)
CGCTGCGATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCG > SRR10918230.488952/1‑151 (MQ=0)
TGCGATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTG > SRR10918230.996394/1‑151 (MQ=0)
CGATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTC < SRR10918230.4918992/151‑1 (MQ=0)
CGATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTC < SRR10918230.4252751/151‑1 (MQ=0)
GATCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCG > SRR10918230.4000775/1‑151 (MQ=0)
ATCTCTCGCAGCGGGAGGCGAATCATACAGCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGC > SRR10918230.2828365/1‑151 (MQ=0)
TCTCTCGCAGCGGGAGGCGAATCATACAGCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCT > SRR10918230.3327588/1‑151 (MQ=0)
TCCCTCGTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCT < SRR10918230.444973/151‑1 (MQ=0)
GTAGCGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGT < SRR10918230.3846581/151‑1 (MQ=0)
CGGGAGGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGG > SRR10918230.940589/1‑151 (MQ=0)
GGAGGCGAATCATACAGCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCG < SRR10918230.3090563/151‑1 (MQ=0)
GGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCAT > SRR10918230.4470485/1‑151 (MQ=0)
GGCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCAT > SRR10918230.1285412/1‑151 (MQ=0)
GCGAATCATACAGCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATT > SRR10918230.2859755/1‑151 (MQ=0)
GCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATT > SRR10918230.3440698/1‑151 (MQ=0)
GCGAATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATT > SRR10918230.771549/1‑151 (MQ=0)
GAATCATACAGCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCTATGTCGCTGGAAGTGGGGCGCATTAT > SRR10918230.1333725/1‑151 (MQ=0)
GAATCATACAGCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTAT > SRR10918230.604242/1‑151 (MQ=0)
AATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATA > SRR10918230.55223/1‑151 (MQ=0)
ATCATACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAA > SRR10918230.3146730/1‑151 (MQ=0)
ACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGA > SRR10918230.2372010/1‑151 (MQ=0)
ACAGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGA > SRR10918230.299640/1‑151 (MQ=0)
AGCACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATT < SRR10918230.4593356/151‑1 (MQ=0)
GCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTC < SRR10918230.4156322/151‑1 (MQ=0)
GCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTC < SRR10918230.4154887/151‑1 (MQ=0)
GCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTC < SRR10918230.3630880/151‑1 (MQ=0)
CACTTGAAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCG < SRR10918230.4599021/151‑1 (MQ=0)
CTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTACCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAG < SRR10918230.2253395/151‑1 (MQ=0)
TTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGA < SRR10918230.3622451/151‑1 (MQ=0)
GAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTTGAGAGGG > SRR10918230.2184331/1‑151 (MQ=0)
AGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCG > SRR10918230.978146/1‑151 (MQ=2)
AGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCG < SRR10918230.1865797/151‑1 (MQ=2)
CAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTT > SRR10918230.4618494/1‑151 (MQ=0)
AACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTTCCTT‑‑‑‑‑‑‑‑TCACTACTTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTT < SRR10918230.717201/151‑1 (MQ=0)
ccatcatctcaaccgctttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAA > SRR10918230.976745/62‑151 (MQ=0)
catctcaaccgctttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGCGGGCGTCAACCTTTAATTTC > SRR10918230.5063058/58‑151 (MQ=0)
catctcaaccgctttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTC < SRR10918230.416595/94‑1 (MQ=0)
ctcaaccgctttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAT < SRR10918230.2259327/97‑1 (MQ=0)
caaccgctttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAA < SRR10918230.3148876/99‑1 (MQ=4)
caaccgctttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAA > SRR10918230.3192910/53‑151 (MQ=4)
accgctttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACC > SRR10918230.4957464/51‑151 (MQ=9)
cgctttcgatcattcgaccgtagcccctccagctttcctttcactacttacCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGT < SRR10918230.2132722/100‑1 (MQ=13)
cgctttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGT > SRR10918230.3715401/49‑151 (MQ=13)
cgctttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGT > SRR10918230.3715425/49‑151 (MQ=13)
tttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGA > SRR10918230.862601/46‑151 (MQ=23)
ttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGAT < SRR10918230.4432267/107‑1 (MQ=25)
ttcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGAT > SRR10918230.1699988/45‑151 (MQ=25)
tcgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATA < SRR10918230.4709386/108‑1 (MQ=28)
cgatcattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAG < SRR10918230.1740699/109‑1 (MQ=30)
cattcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCA < SRR10918230.429411/113‑1 (MQ=38)
attcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAG < SRR10918230.3034695/114‑1 (MQ=41)
attcgaccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGACGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAG > SRR10918230.602851/38‑151 (MQ=39)
accgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAA > SRR10918230.2206419/33‑151 (MQ=51)
ccgtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAA < SRR10918230.3373535/120‑1 (MQ=53)
gtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACA < SRR10918230.4077524/122‑1 (MQ=57)
gtagcccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACA < SRR10918230.4077664/122‑1 (MQ=57)
cccctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGC > SRR10918230.2920807/26‑151 (MQ=60)
cctccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGG < SRR10918230.3861197/128‑1 (MQ=60)
tccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGG < SRR10918230.3490163/130‑1 (MQ=60)
ccagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGA < SRR10918230.3039773/131‑1 (MQ=60)
cagctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAG < SRR10918230.3348246/132‑1 (MQ=60)
ctttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCC < SRR10918230.884809/135‑1 (MQ=60)
tttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCT < SRR10918230.4219360/136‑1 (MQ=60)
tttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCT < SRR10918230.4898740/136‑1 (MQ=60)
ttcctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTG < SRR10918230.2123730/137‑1 (MQ=60)
cctttcactactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGAC > SRR10918230.5311958/13‑151 (MQ=60)
ctttcactcctTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACG < SRR10918230.3982037/140‑1 (MQ=60)
ctactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCC > SRR10918230.5090403/6‑151 (MQ=60)
ctactTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCC > SRR10918230.4538674/6‑151 (MQ=60)
actTAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCC < SRR10918230.4483714/148‑1 (MQ=60)
TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCG > SRR10918230.2820684/1‑40 (MQ=0)
TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCG > SRR10918230.5294173/1‑40 (MQ=0)
ACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAT > SRR10918230.4929724/1‑151 (MQ=60)
ACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAT > SRR10918230.3703569/1‑151 (MQ=60)
CTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATT > SRR10918230.1270850/1‑151 (MQ=60)
TCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTC > SRR10918230.4635950/1‑151 (MQ=60)
TTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATC > SRR10918230.2070573/1‑151 (MQ=60)
ATCTCGAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGA < SRR10918230.266444/151‑1 (MQ=60)
ATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGA < SRR10918230.1094870/151‑1 (MQ=60)
ATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGA > SRR10918230.2196052/1‑151 (MQ=60)
TCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCA < SRR10918230.3745982/151‑1 (MQ=60)
TCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCA > SRR10918230.3145869/1‑151 (MQ=60)
CAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCAC > SRR10918230.2383336/1‑151 (MQ=60)
AAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAtcgga > SRR10918230.4417535/1‑146 (MQ=60)
AAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACA > SRR10918230.3194696/1‑151 (MQ=60)
GGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACC < SRR10918230.1245930/151‑1 (MQ=60)
GAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCA > SRR10918230.2723733/1‑151 (MQ=60)
AGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAG < SRR10918230.2101222/151‑1 (MQ=60)
TTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCA < SRR10918230.2484843/151‑1 (MQ=60)
TTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCAC > SRR10918230.429899/1‑151 (MQ=60)
TTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCA > SRR10918230.5029960/1‑151 (MQ=60)
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TTGGCTCGCTGCGATCTCTCGTAGCGGGAGGCGAATCATACAGCACTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑ACCTTCCGAATCGTC‑‑‑‑‑‑TAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCA > CP009974/1920646‑1920944
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
