Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
343 |
268.7 |
10873516 |
97.0% |
10547310 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
2,747,118 |
Δ2,603 bp |
|
[RPPX_12205]–[RPPX_12220] |
[RPPX_12205], RPPX_12210, RPPX_12215, [RPPX_12220] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
2747118–2749715 |
2749720 |
6–2603 |
262 [0] |
[0] 261 |
[RPPX_12205]–[RPPX_12220] |
[RPPX_12205],RPPX_12210,RPPX_12215,[RPPX_12220] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 2747117 | 0 (0.000) | 246 (0.950) |
166/284 |
0.1 |
100% |
coding (76/867 nt) |
RPPX_12205 |
LysR family transcriptional regulator |
| ? | CP009974 |
2749721 = |
0 (0.000) | coding (99/216 nt) |
RPPX_12220 |
hypothetical protein |
GATK/CNVnator alignment
N/A
