Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
343 |
268.7 |
10873516 |
97.0% |
10547310 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
4,165,118 |
Δ1 bp |
intergenic (‑312/‑163) |
RPPX_18525 ← / → RPPX_18530 |
transporter/16S ribosomal RNA |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 4,165,116 | 0 | A | . | 84.0%
| 76.6
/ 35.0
| 50 | intergenic (‑310/‑165) | RPPX_18525/RPPX_18530 | transporter/16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (5/3); new base . (23/19); total (28/22) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGC > CP009974/4164966‑4165212
|
aaCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCa > 2:4296990/1‑151 (MQ=255)
aaCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCa > 1:3055713/1‑151 (MQ=255)
aCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaa < 2:3467071/151‑1 (MQ=255)
aCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaa < 2:3283800/151‑1 (MQ=255)
aCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaa < 1:764557/151‑1 (MQ=255)
aCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaa > 1:4956311/1‑151 (MQ=255)
gggTAGGGGAGCAAAGGTAGCCACTGTATTGGGTCAAGTGTTTGAGGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgc < 2:4178266/150‑4 (MQ=14)
ggTAGCGAAGCAAAGGTAGCCGCGGTATTGAGTCAAGTGTTTGAAGCTAAACAAAAAAAAAAAAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct < 2:996101/151‑5 (MQ=14)
ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct > 1:1247991/1‑147 (MQ=17)
ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct > 2:3001703/1‑147 (MQ=255)
ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct > 2:1272166/1‑147 (MQ=17)
aGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCtt > 1:2878604/1‑151 (MQ=14)
aGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCCTAACC‑AACGCTCtt > 2:395646/1‑151 (MQ=14)
gCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCttt < 1:2910484/151‑1 (MQ=14)
gCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCttt > 2:4964708/1‑151 (MQ=255)
gCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCttt < 1:466794/151‑1 (MQ=255)
cGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGTCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTa > 2:5199298/1‑151 (MQ=14)
cGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTa < 2:2718078/151‑1 (MQ=14)
cGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTa > 1:2611951/1‑151 (MQ=14)
cGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCCGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTa > 2:5199299/1‑151 (MQ=14)
aaGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAAc > 2:1980312/1‑151 (MQ=14)
aaGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAAc > 1:2751961/1‑151 (MQ=14)
aaGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAAc > 1:5373572/1‑151 (MQ=14)
aGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACa > 2:1656483/1‑151 (MQ=14)
aGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGAGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACa < 2:1703497/151‑1 (MQ=14)
aGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGAGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACa < 2:1704970/151‑1 (MQ=14)
gCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACaa > 2:1431345/1‑151 (MQ=14)
cAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAACGCTCTTAACC‑AACGCTCTTTAACaaa > 2:1171278/1‑151 (MQ=255)
aaaGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacg < 1:3157018/138‑3 (MQ=255)
aaaGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacg > 2:3157018/1‑136 (MQ=255)
aaGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATc < 1:2008053/151‑1 (MQ=14)
gCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGa < 1:5288161/151‑1 (MQ=11)
gCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGa < 2:2696719/151‑1 (MQ=11)
gCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGa < 2:2696310/151‑1 (MQ=14)
gCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGa < 1:3948886/151‑1 (MQ=11)
gCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGa < 1:1292099/151‑1 (MQ=14)
tAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAt < 2:2904996/151‑1 (MQ=11)
tAGCCACGGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAt < 2:2336375/151‑1 (MQ=11)
aGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATc < 1:4241568/151‑1 (MQ=11)
aGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATc < 2:3999496/151‑1 (MQ=11)
aGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCCTTAACAAATCGaacc > 1:4522224/1‑149 (MQ=11)
gCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGTGTAGAATGCGCGCGACGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCa > 2:5211270/1‑151 (MQ=11)
gCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCa < 1:3910626/151‑1 (MQ=11)
gCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGAGTAGAATGCGCGCAACGGTTGAGATGAAAAGCTCTTAACC‑AACGATCTTTAACAAATCGAATCa > 2:5211315/1‑151 (MQ=11)
ccACTGTATTGAGTCAAGTGTTTGAAGCTAAAAGAGAAAAAAAAAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCaa < 2:820138/151‑1 (MQ=11)
cACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAg < 1:4696314/151‑1 (MQ=11)
cACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAg > 1:2338108/1‑151 (MQ=11)
aCTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGc > 2:1328922/1‑151 (MQ=255)
cTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTGTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCa > 2:3723316/1‑151 (MQ=11)
tGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCaa > 1:3431595/1‑151 (MQ=11)
gaagcgAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCaa > 1:3462081/6‑151 (MQ=1)
gTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCAAt > 2:1340150/1‑151 (MQ=11)
gTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCAAt > 2:1120419/1‑151 (MQ=1)
gTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCAAt > 2:2506306/1‑151 (MQ=11)
tATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCAAtt > 1:1854148/1‑151 (MQ=1)
tATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCAAtt < 1:1182131/151‑1 (MQ=255)
agagAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAAtt < 1:3859624/148‑1 (MQ=11)
cgAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCCCTTTAAACAATCGAATCAAGCAATTCg > 2:4366049/2‑151 (MQ=11)
gAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCgt > 1:4646021/1‑151 (MQ=255)
agttAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAg > 2:5007280/4‑151 (MQ=1)
agttAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAg > 2:2747741/4‑151 (MQ=1)
ttaaaaaTAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTAt < 1:1930250/148‑1 (MQ=1)
gccctGACGAAAGCGTAGCATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCAAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGc < 2:4636855/148‑1 (MQ=0)
|
AACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGC > CP009974/4164966‑4165212
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAAC > CP009974/4164971‑4165268
|
GGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCT > SRR10918230.1253502/1‑151 (MQ=44)
AGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTT > SRR10918230.2891130/1‑151 (MQ=38)
GCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTT < SRR10918230.2923150/151‑1 (MQ=36)
GCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTT < SRR10918230.468412/151‑1 (MQ=36)
CGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTA > SRR10918230.2623310/1‑151 (MQ=34)
AAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAAC > SRR10918230.5398793/1‑151 (MQ=30)
AAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAAC > SRR10918230.2764009/1‑151 (MQ=30)
AAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATC < SRR10918230.2016535/151‑1 (MQ=21)
GCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGA < SRR10918230.5312739/151‑1 (MQ=17)
GCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGA < SRR10918230.3966214/151‑1 (MQ=17)
GCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGA < SRR10918230.1297906/151‑1 (MQ=17)
agagatcgaagcgagttaagtgacTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAAT > SRR10918230.3003265/25‑151 (MQ=0)
AGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATC < SRR10918230.4260589/151‑1 (MQ=8)
AGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCCTTAACAAATCGAACC > SRR10918230.4542659/1‑151 (MQ=8)
GCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCA < SRR10918230.3927751/151‑1 (MQ=6)
gatcgaagcgagttaagtgacTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAA < SRR10918230.4842175/130‑1 (MQ=0)
CACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAG < SRR10918230.4717607/151‑1 (MQ=3)
CACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAG > SRR10918230.2348075/1‑151 (MQ=3)
atcgaagcgagttaagtgacTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAG < SRR10918230.3564336/131‑1 (MQ=0)
gaagcgagttaagtgacTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAA > SRR10918230.3477022/18‑151 (MQ=0)
ttaagtgacTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTG < SRR10918230.1223088/142‑1 (MQ=0)
ttaagtgacTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTG < SRR10918230.1222974/142‑1 (MQ=0)
CAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGG < SRR10918230.3024563/151‑1 (MQ=0)
AGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGT < SRR10918230.5342690/151‑1 (MQ=0)
AGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGT > SRR10918230.3013974/1‑151 (MQ=0)
AGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGT > SRR10918230.1122013/1‑151 (MQ=0)
GTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTG < SRR10918230.4286921/151‑1 (MQ=0)
TGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGT > SRR10918230.2660040/1‑151 (MQ=0)
TGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGT < SRR10918230.2039952/151‑1 (MQ=0)
GAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCCCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTG < SRR10918230.4180018/151‑1 (MQ=0)
GAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTG < SRR10918230.2409664/151‑1 (MQ=0)
AGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAG > SRR10918230.2868750/1‑151 (MQ=0)
AGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAG < SRR10918230.2391873/151‑1 (MQ=0)
GCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGT < SRR10918230.3725992/151‑1 (MQ=0)
TAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTAC < SRR10918230.2025478/151‑1 (MQ=0)
TAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTAC < SRR10918230.2023805/151‑1 (MQ=0)
TAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTAC < SRR10918230.1646716/151‑1 (MQ=0)
AAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTCTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACG < SRR10918230.4098381/151‑1 (MQ=0)
AACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGG > SRR10918230.3805192/1‑151 (MQ=0)
AACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGG > SRR10918230.3107387/1‑151 (MQ=0)
ACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGA < SRR10918230.1466551/151‑1 (MQ=0)
CGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGAC > SRR10918230.80031/1‑151 (MQ=0)
GAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACT < SRR10918230.2305972/151‑1 (MQ=0)
AGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTG > SRR10918230.2564860/1‑151 (MQ=0)
GTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGA < SRR10918230.2719038/151‑1 (MQ=0)
TTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATA < SRR10918230.1553998/151‑1 (MQ=0)
TCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAG > SRR10918230.338986/1‑151 (MQ=0)
CTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGT > SRR10918230.245871/1‑151 (MQ=0)
CGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCA < SRR10918230.1640556/151‑1 (MQ=0)
AAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAA > SRR10918230.2583096/1‑151 (MQ=0)
AAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAA > SRR10918230.1573065/1‑151 (MQ=0)
AAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAA > SRR10918230.1977236/1‑151 (MQ=0)
AAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGA < SRR10918230.964229/151‑1 (MQ=0)
AACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGAT > SRR10918230.5080363/1‑151 (MQ=0)
TTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTAT < SRR10918230.666108/151‑1 (MQ=0)
TCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATC < SRR10918230.821944/151‑1 (MQ=0)
TCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATC < SRR10918230.2201240/151‑1 (MQ=0)
AAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGC > SRR10918230.1422768/1‑151 (MQ=0)
AAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGC < SRR10918230.1337643/151‑1 (MQ=0)
AAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGC < SRR10918230.4731889/151‑1 (MQ=0)
AAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGC > SRR10918230.1037518/1‑151 (MQ=0)
ATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCAT < SRR10918230.5143632/151‑1 (MQ=0)
ATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCAT < SRR10918230.3936697/151‑1 (MQ=0)
ATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCAT > SRR10918230.5050295/1‑151 (MQ=0)
ATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCAT < SRR10918230.2495795/151‑1 (MQ=0)
AAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGCGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCA < SRR10918230.4676705/151‑1 (MQ=0)
CGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAA < SRR10918230.4396012/151‑1 (MQ=0)
GCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAG < SRR10918230.4889003/151‑1 (MQ=0)
GCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAG < SRR10918230.2485450/151‑1 (MQ=0)
GCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAG > SRR10918230.807319/1‑151 (MQ=0)
CTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGT > SRR10918230.1672424/1‑151 (MQ=0)
TGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGG < SRR10918230.5331421/151‑1 (MQ=0)
GACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGC < SRR10918230.375029/151‑1 (MQ=0)
GACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGC < SRR10918230.1190705/151‑1 (MQ=0)
ACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCC > SRR10918230.2987708/1‑151 (MQ=0)
ACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCC > SRR10918230.674429/1‑151 (MQ=0)
ACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCC < SRR10918230.366252/151‑1 (MQ=0)
AGGCTCTGAGGAAAGCGTGGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCAT > SRR10918230.4600251/1‑151 (MQ=0)
AGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCAT < SRR10918230.608341/151‑1 (MQ=0)
GGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATG > SRR10918230.1042955/1‑151 (MQ=0)
GGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATG > SRR10918230.3822291/1‑151 (MQ=0)
CTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCG < SRR10918230.273459/151‑1 (MQ=0)
TCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGA > SRR10918230.4112490/1‑151 (MQ=0)
GGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAAT < SRR10918230.1409491/151‑1 (MQ=0)
AATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCAT < SRR10918230.2854991/151‑1 (MQ=0)
AATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCAT < SRR10918230.514587/151‑1 (MQ=0)
AATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCAT > SRR10918230.5094454/1‑151 (MQ=0)
AATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCAT < SRR10918230.5062457/151‑1 (MQ=0)
AATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCAT > SRR10918230.3851989/1‑151 (MQ=0)
ATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATT < SRR10918230.1986258/151‑1 (MQ=0)
TGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTT < SRR10918230.1011568/151‑1 (MQ=0)
CGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGA < SRR10918230.1795283/151‑1 (MQ=0)
GCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAG < SRR10918230.4082684/151‑1 (MQ=0)
CTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTG < SRR10918230.4081593/151‑1 (MQ=0)
CGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCT < SRR10918230.2114949/151‑1 (MQ=0)
TTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAG < SRR10918230.3884818/151‑1 (MQ=0)
GAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCC > SRR10918230.145055/1‑151 (MQ=0)
GACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAA < SRR10918230.1553945/151‑1 (MQ=0)
CGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGT > SRR10918230.3946539/1‑151 (MQ=0)
CGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGT > SRR10918230.5421540/1‑151 (MQ=0)
CGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGT > SRR10918230.124048/1‑151 (MQ=0)
GAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTT < SRR10918230.2195862/151‑1 (MQ=0)
GAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTT < SRR10918230.273358/151‑1 (MQ=0)
AAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTT < SRR10918230.3600653/151‑1 (MQ=0)
GGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGG < SRR10918230.608273/151‑1 (MQ=0)
GTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGG > SRR10918230.1017153/1‑151 (MQ=0)
CTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTT < SRR10918230.1966027/151‑1 (MQ=0)
TAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCT > SRR10918230.593477/1‑151 (MQ=0)
CCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAA < SRR10918230.5318881/151‑1 (MQ=0)
CAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAA < SRR10918230.1541683/151‑1 (MQ=0)
AACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGCGTTTCTTAAAAA > SRR10918230.3987625/1‑151 (MQ=0)
ACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAAC > SRR10918230.235844/1‑151 (MQ=0)
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GGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAAC > CP009974/4164971‑4165268
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |