Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,389,148 G→T 38.4% T157K (ACG→AAG)  yhdP ← DUF3971‑AsmA2 domains protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,389,1480GT38.4% 383.2 / 273.9 262T157K (ACG→AAG) yhdPDUF3971‑AsmA2 domains protein
Reads supporting (aligned to +/- strand):  ref base G (58/103);  new base T (45/55);  total (104/158)
Fisher's exact test for biased strand distribution p-value = 1.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 263 total aligned reads displayed.

TCATCGCGCAAATCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAGAAAGTGAGG  >  CP009273/3389001‑3389297
                                                                                                                                                   |                                                                                                                                                     
tcatcGCGCAAATCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTc                                                                                                                                                     >  1:2089655/1‑150 (MQ=255)
tcatcGCGCAAATCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTc                                                                                                                                                     >  2:764705/1‑150 (MQ=255)
  atcGCGCAAATCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAg                                                                                                                                                   >  1:4200941/1‑150 (MQ=255)
  atcGCGCAAATCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAg                                                                                                                                                   >  1:1971219/1‑150 (MQ=255)
      cgcAAATCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGaaa                                                                                                                                               <  2:449504/150‑1 (MQ=255)
        cAAATCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACt                                                                                                                                             >  2:1668824/1‑150 (MQ=255)
        cAAATCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACt                                                                                                                                             <  1:1282550/150‑1 (MQ=255)
         aaaTCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTg                                                                                                                                            <  2:2542969/150‑1 (MQ=255)
          aaTCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGa                                                                                                                                           >  2:1702837/1‑150 (MQ=255)
           aTCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGAc                                                                                                                                          <  2:2793394/150‑1 (MQ=255)
               aTGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCa                                                                                                                                      <  2:1636961/150‑1 (MQ=255)
               aTGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCa                                                                                                                                      >  2:1014872/1‑150 (MQ=255)
                tGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCAc                                                                                                                                     <  1:1785749/150‑1 (MQ=255)
                    cACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTc                                                                                                                                 <  1:788212/150‑1 (MQ=255)
                    cACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTc                                                                                                                                 <  1:302164/150‑1 (MQ=255)
                    cACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGATAACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGGTGTGGGATCGCCAGCTCGTCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTc                                                                                                                                 >  1:663948/1‑150 (MQ=255)
                     aCCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTcg                                                                                                                                <  1:2706109/150‑1 (MQ=255)
                     aCCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTcg                                                                                                                                <  2:373830/150‑1 (MQ=255)
                      ccTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTcgc                                                                                                                               >  1:1522765/1‑150 (MQ=255)
                       cTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTcgcg                                                                                                                              <  2:4290102/150‑1 (MQ=255)
                           aTCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGa                                                                                                                          <  2:2584048/150‑1 (MQ=255)
                            tCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGAt                                                                                                                         >  1:2118426/1‑150 (MQ=255)
                             cACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATc                                                                                                                        <  2:4229091/150‑1 (MQ=255)
                               cGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGa                                                                                                                      >  1:3975553/1‑150 (MQ=255)
                                gCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGaa                                                                                                                     <  2:2927956/150‑1 (MQ=255)
                                 ccGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGaaa                                                                                                                    <  2:2269021/150‑1 (MQ=255)
                                  cGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAAt                                                                                                                   <  2:1416820/150‑1 (MQ=255)
                                  cGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAAt                                                                                                                   <  2:1213544/150‑1 (MQ=255)
                                  cGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAAt                                                                                                                   >  2:66652/1‑150 (MQ=255)
                                        gTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCaa                                                                                                             >  2:746313/1‑150 (MQ=255)
                                        gTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCaa                                                                                                             >  2:4050498/1‑150 (MQ=255)
                                          ccGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAAt                                                                                                           <  1:3309483/150‑1 (MQ=255)
                                           cGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAAtt                                                                                                          <  2:341235/150‑1 (MQ=255)
                                           cGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTNCACTGTCGCGAAGATCGAAATGGTCAAAtt                                                                                                          <  1:4288249/150‑1 (MQ=255)
                                            ggTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTg                                                                                                         <  1:1460501/150‑1 (MQ=255)
                                                aGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACga                                                                                                     >  2:1882602/1‑150 (MQ=255)
                                                aGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACga                                                                                                     >  1:1637315/1‑150 (MQ=255)
                                                  gCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACgaag                                                                                                   <  1:4123312/150‑1 (MQ=255)
                                                  gCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACgaag                                                                                                   <  1:677489/150‑1 (MQ=255)
                                                      gagaGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAAc                                                                                               <  2:1142561/150‑1 (MQ=255)
                                                       agagGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACa                                                                                              >  2:878045/1‑150 (MQ=255)
                                                       agagGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACa                                                                                              <  1:4417414/150‑1 (MQ=255)
                                                        gagGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAg                                                                                             <  2:4641298/150‑1 (MQ=255)
                                                         agGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGa                                                                                            <  1:2837523/150‑1 (MQ=255)
                                                          ggCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGAt                                                                                           <  1:3189718/150‑1 (MQ=255)
                                                           gCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATc                                                                                          <  1:3460381/150‑1 (MQ=255)
                                                              tACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCt                                                                                       >  2:190980/1‑150 (MQ=255)
                                                              tACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCt                                                                                       <  2:405884/150‑1 (MQ=255)
                                                                ccAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGa                                                                                     >  1:2285460/1‑150 (MQ=255)
                                                                   ggCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGAtgt                                                                                  >  1:573634/1‑150 (MQ=255)
                                                                    gCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGAtgtg                                                                                 >  2:364863/1‑150 (MQ=255)
                                                                          cGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGc                                                                           >  2:4182604/1‑150 (MQ=255)
                                                                          cGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGc                                                                           <  2:3132976/150‑1 (MQ=255)
                                                                           gCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCt                                                                          <  1:4097793/150‑1 (MQ=255)
                                                                            cACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCtt                                                                         <  2:2578894/150‑1 (MQ=255)
                                                                             aCGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTc                                                                        <  1:3713037/150‑1 (MQ=255)
                                                                                gtgtCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAg                                                                     >  1:2425650/1‑150 (MQ=255)
                                                                                   tCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACt                                                                  <  2:4195333/150‑1 (MQ=255)
                                                                                    cGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTg                                                                 >  2:2048015/1‑150 (MQ=255)
                                                                                    cGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTg                                                                 <  1:3626745/150‑1 (MQ=255)
                                                                                       cGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGtca                                                              <  2:2355305/150‑1 (MQ=255)
                                                                                        gTGGATCGTTCAGCCATGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTAGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGtcat                                                             <  2:2262223/150‑1 (MQ=255)
                                                                                          ggATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGtcatca                                                           <  1:437653/150‑1 (MQ=255)
                                                                                          ggATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGtcatca                                                           >  1:2507277/1‑150 (MQ=255)
                                                                                          ggATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGtcatca                                                           <  1:1818457/150‑1 (MQ=255)
                                                                                            aTCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACt                                                         >  2:2184472/1‑150 (MQ=255)
                                                                                            aTCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACt                                                         >  2:577600/1‑150 (MQ=255)
                                                                                             tCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTa                                                        >  1:1655931/1‑150 (MQ=255)
                                                                                             tCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTa                                                        <  1:1087908/150‑1 (MQ=255)
                                                                                                 tCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTaccac                                                    >  1:3707870/1‑150 (MQ=255)
                                                                                                     ccAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCt                                                >  2:3029362/1‑150 (MQ=255)
                                                                                                     ccAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCt                                                <  2:4350275/150‑1 (MQ=255)
                                                                                                      cAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTg                                               >  1:989097/1‑150 (MQ=255)
                                                                                                        ggTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGt                                             >  2:1944133/1‑150 (MQ=255)
                                                                                                                  gggATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAgtg                                   <  1:1668824/150‑1 (MQ=255)
                                                                                                                    gATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGtt                                 >  1:1811336/1‑150 (MQ=255)
                                                                                                                    gATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGtt                                 >  1:256308/1‑150 (MQ=255)
                                                                                                                     aTCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTg                                <  2:2842852/150‑1 (MQ=255)
                                                                                                                     aTCGCCAGCTCGGCGCGCTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTg                                <  2:4384380/150‑1 (MQ=255)
                                                                                                                     aTCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTg                                <  2:3821991/150‑1 (MQ=255)
                                                                                                                     aTCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTg                                <  2:707515/150‑1 (MQ=255)
                                                                                                                       cGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGt                              <  2:3755144/150‑1 (MQ=255)
                                                                                                                            gCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGaa                         >  1:2138454/1‑150 (MQ=255)
                                                                                                                            gCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGaa                         >  1:3221134/1‑150 (MQ=255)
                                                                                                                                ggCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAgcg                     >  1:100252/1‑150 (MQ=255)
                                                                                                                                  cgcgcTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCa                   <  1:2666649/150‑1 (MQ=255)
                                                                                                                                  cgcgcTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCa                   >  2:3299052/1‑150 (MQ=255)
                                                                                                                                   gcgcTGACCGGATGGCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAg                  >  2:2428669/1‑150 (MQ=255)
                                                                                                                                    cgcTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGc                 <  1:1702981/150‑1 (MQ=255)
                                                                                                                                     gcTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCt                <  1:88364/150‑1 (MQ=255)
                                                                                                                                     gcTGACCGGATGGATTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATATCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCt                <  2:21241/150‑1 (MQ=255)
                                                                                                                                         aCCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCa            <  1:4594826/150‑1 (MQ=255)
                                                                                                                                          ccGGATGGCATCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCAACACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAg           >  2:3359087/1‑150 (MQ=255)
                                                                                                                                              aTGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAGAAAg       >  1:2344826/1‑150 (MQ=255)
                                                                                                                                               tGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAGAAAGt      >  1:2613908/1‑150 (MQ=255)
                                                                                                                                                ggCTTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAGAAAGTg     <  2:3625482/150‑1 (MQ=255)
                                                                                                                                                  cGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAGAAAGTGAg   <  2:906942/150‑1 (MQ=255)
                                                                                                                                                  cGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAGAAAGTGAg   <  2:1534349/150‑1 (MQ=255)
                                                                                                                                                  cGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAGAAAGTGAg   >  1:2745089/1‑150 (MQ=255)
                                                                                                                                                   gTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAGAAAGTGAgg  >  2:3571710/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
TCATCGCGCAAATCCATGCGCACCTGCATCACGCCGTGCTGTCCGGTAAGGCTGGAGAGGCTTACCAGGCCTTCCGCACGGTGTCGACGTGGATCGTTCAGCCAGGTGAGTTGTGGGATCGCCAGCTCGGCGCGCTGACCGGATGGCGTCAGGAAACTGACTTCACTGTCGCGAAGATCGAAATGGTCAAATTGACGAAGAAACAGATCGCTGATGTGACTGGCTTCCAGACTGTCATCACTACCACCGCTGGTGATAGGAGTGTTGGTGCGAAAGCGCAGCTGCCAGAAAGTGAGG  >  CP009273/3389001‑3389297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A