Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F86 I0 R1	593	297.4	9515568	94.4%	8982696	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	4,250,324	G→A	19.7%	A26T (GCA→ACA)	yjbL →	uncharacterized protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	4,250,324	0	G	A	19.7%	188.5 / 40.3	81	A26T (GCA→ACA)	yjbL	uncharacterized protein
Reads supporting (aligned to +/- strand): ref base G (26/39); new base A (6/10); total (32/49)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.78e-01

TTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAACGAATCACGCA  >  CP009273/4250181‑4250466

tttGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCa                                                                                                                                          <  2:3177994/150‑1 (MQ=255)

 ttGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACTAAAAAGGTAGATGAATCATGTTGAAGATAAGACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCaa                                                                                                                                         <  2:2203661/150‑1 (MQ=255)

     tAGTGACCAGATTTCAAAAGAATTATAAGGATGACACTGTACGACAAAAAAGGTATATGAATCATGTTTAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGAt                                                                                                                                     <  2:2552058/150‑1 (MQ=255)

               aTGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGata                                                                                                                           <  1:1457977/150‑1 (MQ=255)

                tgtcAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGataa                                                                                                                          <  2:456971/147‑1 (MQ=255)

                tGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGataa                                                                                                                          <  2:2835656/150‑1 (MQ=255)

                tGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGataa                                                                                                                          >  1:3031916/1‑150 (MQ=255)

                tGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGataa                                                                                                                          >  1:3030798/1‑150 (MQ=255)

                   cAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATag                                                                                                                       >  1:3018042/1‑150 (MQ=255)

                   cAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATag                                                                                                                       >  1:3018034/1‑150 (MQ=255)

                    aaaaGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATaga                                                                                                                      <  1:4716887/150‑1 (MQ=255)

                    aaaaGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATaga                                                                                                                      <  1:1596224/150‑1 (MQ=255)

                    aaaaGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATaga                                                                                                                      <  2:443857/150‑1 (MQ=255)

                    aaaaGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATaga                                                                                                                      <  2:2045142/150‑1 (MQ=255)

                    aaaaGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATaga                                                                                                                      <  2:2044329/150‑1 (MQ=255)

                       aGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGt                                                                                                                   >  2:1341158/1‑150 (MQ=255)

                         aaTTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTtc                                                                                                                 <  2:2427507/150‑1 (MQ=255)

                         aaTTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTtc                                                                                                                 <  2:2427495/150‑1 (MQ=255)

                            tataAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTtcaat                                                                                                              <  2:1614961/150‑1 (MQ=255)

                             ataAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTtcaatc                                                                                                             <  1:1252653/150‑1 (MQ=255)

                             ataAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTtcaatc                                                                                                             >  2:2956163/1‑150 (MQ=255)

                             ataAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTtcaatc                                                                                                             >  2:2956780/1‑150 (MQ=255)

                             ataAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTtcaatc                                                                                                             >  2:2957163/1‑150 (MQ=255)

                              taAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATCGAGGTtcaatca                                                                                                            >  2:720108/1‑150 (MQ=255)

                                   aggaCACGGTACGACAAAAAAGTTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTTGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGt                                                                                                       <  1:3205329/150‑1 (MQ=255)

                                    ggaCACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGta                                                                                                      <  1:4309262/150‑1 (MQ=255)

                                      acacGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGtaaa                                                                                                    <  2:725436/150‑1 (MQ=255)

                                       cacGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGtaaat                                                                                                   <  1:747717/150‑1 (MQ=255)

                                           gTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGtaaattaaa                                                                                               <  1:2731689/150‑1 (MQ=255)

                                           gTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGtaaattaaa                                                                                               <  1:2731711/150‑1 (MQ=255)

                                              cGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAaataa                                                                                            >  2:333396/1‑150 (MQ=255)

                                                aCAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAataata                                                                                          <  1:966790/150‑1 (MQ=255)

                                                   aaaaaGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAatatat                                                                                       >  1:3064039/1‑150 (MQ=255)

                                                    aaaaGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAatatata                                                                                      <  2:4215464/150‑1 (MQ=255)

                                                    aaaaGGTAGATGAATCATGTTGAAGATAATACCCGGAGCAACTTGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAatatata                                                                                      <  2:4215387/150‑1 (MQ=255)

                                                        ggTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGt                                                                                  <  1:2928858/150‑1 (MQ=255)

                                                             aTGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTATATAATAGATGTTAAATAAAATTTAAATTAAAAAAAATATATTTTAAAta                                                                             >  2:3733714/1‑149 (MQ=255)

                                                             aTGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATc                                                                             <  1:487359/150‑1 (MQ=255)

                                                             aTGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATc                                                                             <  1:487388/150‑1 (MQ=255)

                                                              tGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCt                                                                            <  1:4745607/150‑1 (MQ=255)

                                                               gAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTa                                                                           <  1:4266493/150‑1 (MQ=255)

                                                                aaTCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTAt                                                                          >  2:621471/1‑150 (MQ=255)

                                                                 aTCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTAtt                                                                         <  2:1981380/150‑1 (MQ=255)

                                                                  tCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTg                                                                        >  1:3934914/1‑150 (MQ=255)

                                                                        tGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATg                                                                  <  2:2992232/150‑1 (MQ=255)

                                                                                        tGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGAGTATGCAGCGCTGCGTCCTCg                                                  >  2:2422004/1‑150 (MQ=255)

                                                                                         gCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCgg                                                 <  2:3934914/150‑1 (MQ=255)

                                                                                          cAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCggg                                                <  2:3030798/150‑1 (MQ=255)

                                                                                          cAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCggg                                                <  2:3031916/150‑1 (MQ=255)

                                                                                           aaCTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGa                                               >  1:4093721/1‑150 (MQ=255)

                                                                                             cTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGata                                             <  1:901427/150‑1 (MQ=255)

                                                                                              tGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGatat                                            >  1:280682/1‑150 (MQ=255)

                                                                                              tGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGatat                                            >  1:280364/1‑150 (MQ=255)

                                                                                              tGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGatat                                            >  1:2315263/1‑150 (MQ=255)

                                                                                              tGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGatat                                            <  1:1168410/150‑1 (MQ=255)

                                                                                              tGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGatat                                            <  1:1168390/150‑1 (MQ=255)

                                                                                              tGGATACTTTAATAAAACACTCAATTAAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGatat                                            <  2:2847171/150‑1 (MQ=255)

                                                                                               ggATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGAtata                                           <  1:2484795/150‑1 (MQ=255)

                                                                                                gATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATaa                                          >  2:21221/1‑150 (MQ=255)

                                                                                                  tACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAatt                                        <  1:4265945/150‑1 (MQ=255)

                                                                                                     tttAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAattatt                                     <  1:1855570/150‑1 (MQ=255)

                                                                                                       taataaAACACTCAATTCAAATCAATTCGATAATGAAGATACAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGc                                   >  2:1755682/1‑150 (MQ=255)

                                                                                                           aaaaCACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCaaaa                               >  1:3195324/1‑150 (MQ=255)

                                                                                                              acacTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTCTTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATa                            >  2:886315/1‑150 (MQ=255)

                                                                                                              acacTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATa                            <  1:3814590/150‑1 (MQ=255)

                                                                                                                  tCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGAtt                        <  1:4188166/150‑1 (MQ=255)

                                                                                                                  tCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGAtt                        <  1:3642945/150‑1 (MQ=255)

                                                                                                                  tCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGAtt                        <  1:3641781/150‑1 (MQ=255)

                                                                                                                   cAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGAttt                       >  2:3554342/1‑150 (MQ=255)

                                                                                                                    aaTTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTg                      >  1:4509120/1‑150 (MQ=255)

                                                                                                                    aaTTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTg                      <  2:4635298/150‑1 (MQ=255)

                                                                                                                    aaTTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTg                      >  1:3301542/1‑150 (MQ=255)

                                                                                                                             aaaTTCGATAATGAAGATGCAATCAAAGATAAATTATATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTaaa             >  2:273538/2‑150 (MQ=255)

                                                                                                                              aaTTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAAc            >  1:4221348/1‑150 (MQ=255)

                                                                                                                               aTTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAACg           >  1:851833/1‑150 (MQ=255)

                                                                                                                                 tCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAACGaa         >  1:1778848/1‑150 (MQ=255)

                                                                                                                                     tAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAACGAATCAc     <  1:2066194/150‑1 (MQ=255)

                                                                                                                                     tAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAACGAATCAc     <  1:2066175/150‑1 (MQ=255)

                                                                                                                                      aaTGAAGATGCAAACAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAACGAATCACg    <  1:3733714/150‑1 (MQ=255)

                                                                                                                                        tGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCCAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAACGAATCACGCa  >  2:896263/1‑150 (MQ=255)

                                                                                                                                        tGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAACGAATCACGCa  >  2:3268593/1‑150 (MQ=255)

TTTGATAGTGACCAGATGGCAAAAGAATTATAAGGAGGACACGGTACGACAAAAAAGGTAGATGAATCATGTTGAAGATAATACCCGGTGCAACTGGATACTTTAATAAAACACTCAATTCAAATCAATTCGATAATGAAGATGCAATCAAAGATAAATTAGATAATAGAGGTTCAATCAAAGGTAAATTAAATAATATATATGGTAAATCTATTGATTATGCAGCGCTGCGTCATCGGGATATAATTATTGCAAAAATAGATTTGTTTATTCAACGAATCACGCA  >  CP009273/4250181‑4250466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A