Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F0 I0 R1 81 326.4 10500568 93.1% 9776028 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,822,340 A→C 14.4% Q12H (CAA→CAC) ‡ xanP → xanthine permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,822,3400AC14.4% 457.2 / 24.4 239Q12H (CAA→CAC) ‡xanPxanthine permease
Reads supporting (aligned to +/- strand):  ref base A (151/48);  new base C (12/28);  total (163/76)
Fisher's exact test for biased strand distribution p-value = 9.10e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 243 total aligned reads displayed.

ATAAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGGCGCTGG  >  CP009273/3822193‑3822488
                                                                                                                                                   |                                                                                                                                                    
ataAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCaaac                                                                                                                                                    >  1:382773/1‑148 (MQ=255)
ataAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAAcc                                                                                                                                                    >  2:4403333/1‑150 (MQ=255)
   aaaaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGt                                                                                                                                                 <  2:4337437/150‑1 (MQ=255)
     aaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGttt                                                                                                                                               >  1:1355694/1‑149 (MQ=255)
      aaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTgc                                                                                                                                              <  2:4777870/150‑1 (MQ=255)
      aaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTgc                                                                                                                                              <  1:3219930/150‑1 (MQ=255)
        gTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCCGAAAATGCGCAACAGGTTgcgc                                                                                                                                            >  2:2647791/1‑150 (MQ=255)
             tttATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACt                                                                                                                                       >  2:5024863/1‑150 (MQ=255)
                 tctcATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCaaa                                                                                                                                   >  2:4701338/1‑150 (MQ=255)
                     aTTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAg                                                                                                                               >  2:2612523/1‑150 (MQ=255)
                       ttAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACACAAAAAAGCg                                                                                                                             >  2:4603715/1‑150 (MQ=255)
                        tAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGa                                                                                                                            >  2:3360726/1‑150 (MQ=255)
                          aaTATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGGTGCGCAGACTCAAAAAACCGAAc                                                                                                                          >  1:1867645/1‑150 (MQ=255)
                           atatTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCCCCGCGTGCGCCCACACAAAAAACCGAAca                                                                                                                         >  1:5070620/1‑149 (MQ=255)
                             atTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGa                                                                                                                       >  2:5107280/1‑150 (MQ=255)
                             atTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCACACACAAAACACCCAACAGa                                                                                                                       >  2:1496797/1‑150 (MQ=255)
                                tAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGAttt                                                                                                                    >  2:3150348/1‑150 (MQ=255)
                                  gATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCAGACTCAAAAAAGCGAACTGATTTaa                                                                                                                  >  1:4692023/1‑149 (MQ=255)
                                   aTGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTTGCGCAGACAAAAAACAACCAACAGAATTaac                                                                                                                 >  1:3227105/1‑148 (MQ=255)
                                      aGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTc                                                                                                              >  2:2139822/1‑150 (MQ=255)
                                      aGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTc                                                                                                              >  2:2606184/1‑150 (MQ=255)
                                         aTGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTTCGCAGACTCAAAACAGCGAACTGATTTAACGTCTTg                                                                                                           >  2:2267046/1‑150 (MQ=255)
                                          tgtgGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGATACCACGGTATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGa                                                                                                          <  2:3757075/150‑1 (MQ=255)
                                              gCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGTTGCGCAGACACAAAACAGCGAACTGATTTACCGTCTTGAAGAt                                                                                                      >  2:1734974/1‑150 (MQ=255)
                                              gCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGAt                                                                                                      >  2:1734452/1‑150 (MQ=255)
                                                 aaCGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGt                                                                                                   >  2:217952/1‑150 (MQ=255)
                                                 aaCGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAAAAGCGAACTGATTTAACGTCGTGAAGATAGt                                                                                                   >  1:803539/1‑150 (MQ=255)
                                                  aCGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGGTGCGCAGACCCAAAAAAACCAACAGATTTAACCCCATGAAGATAGTc                                                                                                  >  1:4182555/1‑150 (MQ=255)
                                                    gTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGGTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTccg                                                                                                >  2:3457604/1‑150 (MQ=255)
                                                     tttGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTGGCGCAGACACAAAAAACCCACCAGATTTAACGTCATGAAGATCCTccgc                                                                                               >  1:4436069/1‑150 (MQ=255)
                                                      ttGCTTTTCTCTTTCGGTCAGCTACAATGCCCGCTTGGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCCGAAAATGCGCAACCGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTccgcc                                                                                              <  2:4861181/150‑1 (MQ=255)
                                                      ttGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCCACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTTGCGCAGCCGCAAAACAGCCAACAGAATTAACGACATGAAAATACTccgcc                                                                                              >  1:3110853/1‑150 (MQ=255)
                                                       tGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCCCTTTCGCAGACACAAAAAAGCCAACTTATTTAACCACTTTTATATAGTccgccg                                                                                             >  1:1820189/1‑150 (MQ=255)
                                                       tGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACACAAAAAAGCGAACAGATTTTCCGTCTTGAAGATCGTacgccc                                                                                             >  2:3953939/1‑149 (MQ=255)
                                                          ttttCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCGTGAAGATCGTCCGCCGCtt                                                                                          >  2:874018/1‑150 (MQ=255)
                                                            ttCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACACGTTGCGCAGACGCAAAAAAGCGAACTGATTTAAAATCTTGTAGATAGTCCCCCCCATcc                                                                                        >  1:4587931/1‑150 (MQ=255)
                                                               tctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCa                                                                                     >  2:5186604/1‑150 (MQ=255)
                                                               tctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCa                                                                                     >  2:4921549/1‑150 (MQ=255)
                                                               tctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCa                                                                                     >  2:4805159/1‑150 (MQ=255)
                                                               tctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCa                                                                                     >  2:4920514/1‑150 (MQ=255)
                                                                  ttCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGGTGCGCCGTCTAAAAAAAGCGAACTGCTTTACCGTCTTTTAGATCGTCCGGCGCGTCCACAAAc                                                                                  >  2:2648453/1‑150 (MQ=255)
                                                                  ttCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCAGCCTCAAAACAGCGAACGGATTTACCGTCTTGAAGATCGTCCGCCCCGTCCACAAAc                                                                                  >  1:4597115/1‑150 (MQ=255)
                                                                   tCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCAAAACAGCGAACTGAGTTACCGTCTTGAAGATCGTCCGCCGCGTCCTCAAAcc                                                                                 >  2:1832369/1‑150 (MQ=255)
                                                                   tCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAAcc                                                                                 >  2:2576295/1‑150 (MQ=255)
                                                                   tCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAAcc                                                                                 >  2:2932643/1‑150 (MQ=255)
                                                                    cGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTAACGTCTTGAAGATAGTACGCCGCTTCCACAAAccc                                                                                >  1:839248/1‑150 (MQ=255)
                                                                    cGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAAAAGCGAACTGATTTAACGGCTTGAAGATCGTCCGCCGCGTCCTCAAAccc                                                                                >  1:1291887/1‑150 (MQ=255)
                                                                        cAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTAACGTCTTGAAGATCGTCCGCCGCTTCCTCAAAACCAGtt                                                                            >  2:4532588/1‑150 (MQ=255)
                                                                         aGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCGGttt                                                                           >  2:1891710/1‑150 (MQ=255)
                                                                           cTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGGGCCCCCCGGTGCGCACCCACAAAAAACCCACCAGATTTAACGGCTTGAAGATCGACCGCCGCCGCCACAAACACAGTTTga                                                                         >  1:947847/1‑149 (MQ=255)
                                                                           cTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGGTGCGCAGACACAAAAAAGCGAACAGATTTAACGTCGTGAATATCGTCCGCCCCCTCCGCAAAacccgatttg                                                                         >  1:3565739/1‑143 (MQ=255)
                                                                            tAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTgcc                                                                        >  2:1055510/1‑150 (MQ=255)
                                                                            tAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTgcc                                                                        <  2:5172783/150‑1 (MQ=255)
                                                                             aaaaTGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTgccg                                                                       >  2:4150144/1‑150 (MQ=255)
                                                                               aaTGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTgcagcc                                                                     >  2:4060806/1‑150 (MQ=255)
                                                                                aTGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCGGTTTGCCGCCt                                                                    >  2:5239927/1‑150 (MQ=255)
                                                                                 tGCCCGCTTTGCTACCACGGGATTTTTTTCGATGTGTGTTTCCACCCTCGTGTCAGAAATTGCGCAACGGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTg                                                                   <  2:1963830/150‑1 (MQ=255)
                                                                                 tGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTg                                                                   <  2:2539268/150‑1 (MQ=255)
                                                                                  gCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACACAAAAAAACGAACTGATTTAACGTCTTGAAGATCGTCCGCCGCGTCCAAAAAACCCGGTTGGCGCCGGt                                                                  >  1:2386418/1‑150 (MQ=255)
                                                                                   cccGCTTTGCTACCTGGGGATTGTTTTCGTTGTCTGTTACCACCCGCGTGTCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTc                                                                 <  1:320257/150‑1 (MQ=255)
                                                                                   cccGCTTTGCTACCAGGGTTTTGTTTTCGTTTTCTGTTTCCCCCCTCGAGTCAGAAAATGCGCAACGGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTc                                                                 <  1:3903242/150‑1 (MQ=255)
                                                                                    ccGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTTGCGCAGACACAAAACACCCAACAGATGTACCCGCGTGAAGAACGTCCGCCGCATCCTCCAACCCACGTTGCCGCCGGTCa                                                                >  1:2317678/1‑150 (MQ=255)
                                                                                     ctcTTTGCTACCTCGGTTTTGTTTTGGTTTTCGGTTACCACCCTCGAGCCATAAATTGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAg                                                               <  1:2063502/148‑1 (MQ=255)
                                                                                     cGCTTTGCTCCCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGACAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAg                                                               <  2:2208064/150‑1 (MQ=255)
                                                                                     cGCTTTGCTACCACGGGTTTTTTTTCTAGGTCTTTTCCCCCCCTCGAGTCACAAATTGCGCACCGGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAg                                                               <  1:2455776/150‑1 (MQ=255)
                                                                                      gCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAAACCGTTTCGCAGACACAAAAAAACCAACATAATTAACCTCTTTAATATCGTACCCCGCGTACTCAAAACCTGTTTTCCGCCAGTCAGc                                                              >  1:5221030/1‑150 (MQ=255)
                                                                                       ctgtGCTACCTGGGGTTTGTTTTCGATGTCTGTGACCCCCCTCGCGTCAGAAATGGCGCACCGGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCa                                                             <  1:1721006/147‑1 (MQ=255)
                                                                                          tGCTACCAGGGGTTTGTTTTGGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATct                                                          <  2:2211877/150‑1 (MQ=255)
                                                                                           gCTACCCGGGGTTTTTTTTCGTTGTCTGGTTCCCCCCTCGTGTCAGAACCGGCGCACCGGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATctg                                                         <  1:3406461/150‑1 (MQ=255)
                                                                                             tACCACGGTATTTTTTTCGTTGTCTTTTTCCTCCCTCGAGTCAGAAATTGCGCAAGCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGACAGCATctgct                                                       <  2:3931696/150‑1 (MQ=255)
                                                                                             tACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATctgct                                                       <  2:5157265/150‑1 (MQ=255)
                                                                                              aCCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGGGCCCCCCGTTGGGCACACACAAAACAACCAACAGAATTAACGAAGTGAAGATACTCCGCCGCAGCCACAAACCCACGTTTCAGCCAGTCAGCAAcagctg                                                      >  1:1005327/1‑150 (MQ=255)
                                                                                              aCCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGGTGCGCAGACTCAAAAAAGCGAACAGATTTAACCTCTTGTAGATAGTCCGCCGCTTCCACAAACCCGGTTTTCCGCCGGTCAGCAActgctg                                                      >  1:196361/1‑150 (MQ=255)
                                                                                              aCCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGGTGCGCAGACAAAAAAAACCGAAAATATTTAACGTCTTTAAGATCGGCCGCCCCGTCCACAAAACCCGTTTTACGCCAGTCAGCATctgctg                                                      >  1:1488436/1‑150 (MQ=255)
                                                                                              aCCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTATTGAAGATCGTCCGCCGCTTCCTCAAACCCAGTTTTCCGCCTGTCAGCATctgctg                                                      >  1:1640301/1‑150 (MQ=255)
                                                                                              aCCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCCGACTCAAAACAACCAACAGATTTAAAGAATTTAAGATAGTCCGCCCCTTCCACAAAACCAGTTTTCCGCCGGTCAGCaaattctg                                                      >  1:2271747/1‑143 (MQ=255)
                                                                                                caggggTTTTTTTTGGATGGGTGTTTCCACCCTCGAGTCCTAAAAGGCGCACCCGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGc                                                    <  1:2908514/147‑1 (MQ=255)
                                                                                                 aCGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAAATGATTTACCGTCTTGAAGCTCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCCGCATCTGCTGGCg                                                   >  2:3815852/1‑150 (MQ=255)
                                                                                                     gATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCGTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCAGCTGGCGATGt                                               >  2:1798210/1‑150 (MQ=255)
                                                                                                        tGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCg                                            <  2:3600094/150‑1 (MQ=255)
                                                                                                              cGATGTCTGTTACCACCCTCGAGTCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCgg                                      <  1:3470370/150‑1 (MQ=255)
                                                                                                                ttGTCTGTGGCCCCCCTCGAGTCAGAAACTGCGCACCGGGGGGCGCAGACTCAAAACAGCGAACTGCTTGACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTg                                    <  2:4136354/149‑1 (MQ=255)
                                                                                                                aTGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTTCGCAGAAACAAAAAAACGAACGTATTTAACGTCATGAAGATCGTCCGCCCCGTCCTAAAAACCAGTTTTCCGCCAGTAAGCATCATCTTGCGATGTTCGTTGCGGTg                                    >  1:4923055/1‑150 (MQ=255)
                                                                                                                   tCTGTTCCCACCCGCGAGTCATACAAGGCGCACCGGGTTGCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATc                                 <  1:988294/150‑1 (MQ=255)
                                                                                                                     tGTTACCCCCCTCGAGAAATAAAATGCGAAACGGGTTGCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCAc                               <  1:1118359/150‑1 (MQ=255)
                                                                                                                     tGTTACCACCCTGGAGACACAAAAGGCGCAACCGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCAc                               <  1:2622260/150‑1 (MQ=255)
                                                                                                                     tGTTACCACCCTCTAGTCATAAATTGCGCACCGGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCAc                               <  1:2449968/150‑1 (MQ=255)
                                                                                                                           cccccTCGAGGCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAgc                         <  2:4639653/148‑1 (MQ=255)
                                                                                                                              ccTCGAGTCAGAAAATGCTCAAGCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCt                      <  2:5087640/150‑1 (MQ=255)
                                                                                                                              ccTCGAGTCAGAAAATGCGCAACCCGTTGCGCAGACTCAAAACATCGCACAGATTTAACGTCTTGAATATAGTACCCCGCGTCCTCAAAACCAGTTTTGCGCCTGTCAGCAACAGCTGGCGATGTTCGTTGCGGTGATCACGCCAgcgcg                      >  1:2001517/1‑149 (MQ=255)
                                                                                                                                     tCAGAAAATGCGCAACCGGTTTCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCAGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATc               >  2:327277/1‑150 (MQ=255)
                                                                                                                                      cataaatTGCGCACCGGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCt              <  1:377605/147‑1 (MQ=255)
                                                                                                                                      cAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCt              <  2:2756059/150‑1 (MQ=255)
                                                                                                                                      cAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCt              <  2:131148/150‑1 (MQ=255)
                                                                                                                                      cAGAAAATGCGAAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCt              <  2:131157/150‑1 (MQ=255)
                                                                                                                                       aGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTTAAGATAGTCCGCCGCTTCCACAAACCCGGGTTTCCGCCAGTCAGCATATGCTGGCGATGTTAGTTTCGGTGATCACGCCAGCGCTATTAAtatt             >  1:4772437/1‑147 (MQ=255)
                                                                                                                                       aGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTg             <  2:2990739/150‑1 (MQ=255)
                                                                                                                                         aaaaTGCTCAACGGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGcc           <  1:4315334/150‑1 (MQ=255)
                                                                                                                                          aaaTGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCa          >  2:831793/1‑150 (MQ=255)
                                                                                                                                            tggcgcACCGGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAgg        <  1:2777810/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
ATAAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGGCGCTGG  >  CP009273/3822193‑3822488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A