Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F121 I0 R1 856 273.6 9081716 94.1% 8545894 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 899,961 T→A 14.1% intergenic (‑38/‑88) ybjP ← / → ybjQ lipoprotein/UPF0145 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273899,9610TA14.1% 805.7 / 111.0 269intergenic (‑38/‑88)ybjP/ybjQlipoprotein/UPF0145 family protein
Reads supporting (aligned to +/- strand):  ref base T (101/130);  new base A (13/25);  total (114/155)
Fisher's exact test for biased strand distribution p-value = 2.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

Only 100 of 278 total aligned reads displayed.

CAACGCAAGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATCGTTGAATATTGCGGTGTGGT  >  CP009273/899812‑900110
                                                                                                                                                     |                                                                                                                                                     
cAACGCAAGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCt                                                                                                                                                       <  2:2150094/150‑1 (MQ=255)
cAACGCAAGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCt                                                                                                                                                       <  2:3173786/150‑1 (MQ=255)
cAACGCAAGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCt                                                                                                                                                       >  1:1883399/1‑150 (MQ=255)
 aaCGCAAGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGCTCTa                                                                                                                                                      <  2:3093125/150‑1 (MQ=255)
   cGCAAGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACg                                                                                                                                                    <  1:3648258/150‑1 (MQ=255)
     cAAGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGat                                                                                                                                                  <  2:1649964/150‑1 (MQ=255)
     cAAGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGat                                                                                                                                                  <  2:1650547/150‑1 (MQ=255)
      aaGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGata                                                                                                                                                 >  2:465425/1‑150 (MQ=255)
        ggACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGataat                                                                                                                                               >  2:2736425/1‑150 (MQ=255)
         gACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGataata                                                                                                                                              >  2:2934062/1‑150 (MQ=255)
         gACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGataata                                                                                                                                              <  1:2131437/150‑1 (MQ=255)
         gACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGataata                                                                                                                                              <  1:2023231/150‑1 (MQ=255)
           ccACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATaataat                                                                                                                                            >  1:2183987/1‑150 (MQ=255)
           ccACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATaataat                                                                                                                                            <  2:3522897/150‑1 (MQ=255)
             aCTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGa                                                                                                                                          >  1:3586940/1‑150 (MQ=255)
              cTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGat                                                                                                                                         <  1:2935187/150‑1 (MQ=255)
                 cGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCCGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATc                                                                                                                                      >  2:1458374/1‑150 (MQ=255)
                 cGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATc                                                                                                                                      <  2:1296321/150‑1 (MQ=255)
                  gtgtGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATcc                                                                                                                                     <  1:2673479/150‑1 (MQ=255)
                   tgtgCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCt                                                                                                                                    <  2:2783502/150‑1 (MQ=255)
                   tgtgCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATGTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCt                                                                                                                                    <  2:336807/150‑1 (MQ=255)
                    gtgCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCtt                                                                                                                                   <  2:3772323/150‑1 (MQ=255)
                    gtgCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCtt                                                                                                                                   <  2:3436485/150‑1 (MQ=255)
                        cGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCaa                                                                                                                               >  2:4340982/1‑150 (MQ=255)
                              cTTTATAAGCTTGAGTGACTGTGGTGGAGGCACTGAGGAGCAGTGCGCAGGTTATAAGCATTGTCATTTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAg                                                                                                                         <  1:1671494/150‑1 (MQ=255)
                              cTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAg                                                                                                                         <  1:3813441/150‑1 (MQ=255)
                               tttATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGc                                                                                                                        <  2:2246038/150‑1 (MQ=255)
                                ttATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCg                                                                                                                       <  1:1014774/150‑1 (MQ=255)
                                  ataAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTa                                                                                                                     <  1:313098/150‑1 (MQ=255)
                                     aGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCa                                                                                                                  <  2:330089/150‑1 (MQ=255)
                                     aGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCa                                                                                                                  <  1:4512980/150‑1 (MQ=255)
                                     aGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCa                                                                                                                  <  1:2598474/150‑1 (MQ=255)
                                      gCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAg                                                                                                                 >  2:2507178/1‑150 (MQ=255)
                                         ggAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCt                                                                                                              <  1:3316897/150‑1 (MQ=255)
                                           aGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGa                                                                                                            >  1:3264173/1‑150 (MQ=255)
                                           aGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGa                                                                                                            >  2:1243897/1‑150 (MQ=255)
                                            gTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGAt                                                                                                           >  1:984186/1‑150 (MQ=255)
                                            gTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGAt                                                                                                           <  1:881017/150‑1 (MQ=255)
                                              gACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTACCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATaa                                                                                                         >  1:3786530/1‑150 (MQ=255)
                                               aCTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAAt                                                                                                        <  1:1133554/150‑1 (MQ=255)
                                               aCTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAAt                                                                                                        <  1:1377480/150‑1 (MQ=255)
                                                cTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATg                                                                                                       <  2:830627/150‑1 (MQ=255)
                                                cTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATg                                                                                                       <  2:830343/150‑1 (MQ=255)
                                                    ggtgCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCttt                                                                                                   <  2:3007608/150‑1 (MQ=255)
                                                      tgCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTg                                                                                                 <  1:4407126/150‑1 (MQ=255)
                                                      tgCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTg                                                                                                 <  1:1564705/150‑1 (MQ=255)
                                                        cAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTgag                                                                                               <  1:2524110/150‑1 (MQ=255)
                                                         aGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTgaga                                                                                              >  2:4277492/1‑150 (MQ=255)
                                                               tGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAg                                                                                        <  2:4423456/150‑1 (MQ=255)
                                                                 aggagCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGc                                                                                      <  2:3604054/150‑1 (MQ=255)
                                                                 aggagCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGc                                                                                      <  1:75063/150‑1 (MQ=255)
                                                                   gagCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGTTTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGTTAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCtt                                                                                    <  1:4306791/150‑1 (MQ=255)
                                                                   gagCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCtt                                                                                    <  1:1974030/150‑1 (MQ=255)
                                                                      cAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGc                                                                                 <  1:2696897/150‑1 (MQ=255)
                                                                        gTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCaa                                                                               <  1:227104/150‑1 (MQ=255)
                                                                         tGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCaaa                                                                              <  1:127460/150‑1 (MQ=255)
                                                                          gcgcAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAAc                                                                             <  2:1686371/150‑1 (MQ=255)
                                                                            gcAGGGGATAAGCATTGTCAATTTGCTGTAGCGAATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACaa                                                                           <  2:2676277/150‑1 (MQ=255)
                                                                             cAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAg                                                                          <  1:624309/150‑1 (MQ=255)
                                                                              aGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAgg                                                                         >  2:1917622/1‑150 (MQ=255)
                                                                                gggATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGgag                                                                       <  1:4447360/150‑1 (MQ=255)
                                                                                gggATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGgag                                                                       <  1:1585090/150‑1 (MQ=255)
                                                                                 ggATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGgaga                                                                      >  2:1330636/1‑150 (MQ=255)
                                                                                  gATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAgat                                                                     <  1:3432351/150‑1 (MQ=255)
                                                                                   aTAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAgatc                                                                    <  2:3759614/150‑1 (MQ=255)
                                                                                   aTAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAgatc                                                                    <  1:3208038/150‑1 (MQ=255)
                                                                                   aTAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAgatc                                                                    >  1:2869491/1‑150 (MQ=255)
                                                                                   aTAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAgatc                                                                    <  1:1810654/150‑1 (MQ=255)
                                                                                     aaGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAgatcga                                                                  <  1:2926744/150‑1 (MQ=255)
                                                                                      aGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAgatcgat                                                                 >  2:3687242/1‑150 (MQ=255)
                                                                                         aTTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCAt                                                              <  2:2354323/150‑1 (MQ=255)
                                                                                              cAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAAt                                                         <  1:1106377/150‑1 (MQ=255)
                                                                                               aaTTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAAtt                                                        <  2:2191446/150‑1 (MQ=255)
                                                                                                 tttGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAAtttt                                                      <  1:968429/150‑1 (MQ=255)
                                                                                                    gCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTa                                                   >  2:3011892/1‑150 (MQ=255)
                                                                                                     cTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTAc                                                  <  2:3213057/150‑1 (MQ=255)
                                                                                                     cTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTAc                                                  <  1:4270375/150‑1 (MQ=255)
                                                                                                         aGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAAcc                                              <  2:1077917/150‑1 (MQ=255)
                                                                                                           cgcATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAAcccc                                            >  1:3682524/1‑150 (MQ=255)
                                                                                                           cgcATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAAcccc                                            >  2:1944300/1‑150 (MQ=255)
                                                                                                           cgcATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAAcccc                                            >  1:3876065/1‑150 (MQ=255)
                                                                                                              aTAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAAc                                         <  1:4008978/150‑1 (MQ=255)
                                                                                                               tAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTCTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAAct                                        <  1:1226084/150‑1 (MQ=255)
                                                                                                               tAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGCGATCGATCATGCAATTTTCTACAACCCCAAct                                        >  2:3540067/1‑150 (MQ=255)
                                                                                                                aaTGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAActc                                       >  2:1579721/1‑150 (MQ=255)
                                                                                                                  tGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTg                                     >  1:3964780/1‑150 (MQ=255)
                                                                                                                  tGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAAGAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTg                                     <  2:2910627/150‑1 (MQ=255)
                                                                                                                       tCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAgg                                >  2:3930073/1‑150 (MQ=255)
                                                                                                                       tCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAgg                                >  1:3152526/1‑150 (MQ=255)
                                                                                                                         cTTATAAGCGATCGCTCTGAAAGCGTTCAACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGcc                              >  2:734378/1‑150 (MQ=255)
                                                                                                                           tataAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAg                            >  1:3030952/1‑150 (MQ=255)
                                                                                                                              aaGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGAcc                         >  1:3473513/1‑150 (MQ=255)
                                                                                                                                 cGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATc                      <  2:3743271/150‑1 (MQ=255)
                                                                                                                                    tCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATCGtt                   >  2:1778391/1‑150 (MQ=255)
                                                                                                                                    tCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATCGtt                   <  1:2075663/150‑1 (MQ=255)
                                                                                                                                       ctctGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATCGTTGaa                <  1:1253154/150‑1 (MQ=255)
                                                                                                                                         ctGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATCGTTGAata              <  2:3327206/150‑1 (MQ=255)
                                                                                                                                           gAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATCGTTGAATAtt            <  2:2405265/150‑1 (MQ=255)
                                                                                                                                           gAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATCGTTGAATAtt            <  2:12450/150‑1 (MQ=255)
                                                                                                                                                    cTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATCGTTGAATATTGCGGTgtgg   >  1:369496/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CAACGCAAGGACCACTGCGTGTGCCGTTATCTTTATAAGCTGGAGTGACTGTGGTGCAGGCACTGAGGAGCAGTGCGCAGGGGATAAGCATTGTCAATTTGCTGTAGCGCATAATGATTTCCTTATAAGCGATCGCTCTGAAAGCGTTCTACGATAATAATGATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCATGCAATTTTCTACAACCCCAACTCTGGAAGGCCAGACCATCGTTGAATATTGCGGTGTGGT  >  CP009273/899812‑900110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A