Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F309 I0 R1 1697 197.2 6627756 95.7% 6342762 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 172,979 G→T 6.2% A462A (GCG→GCT)  clcA → H(+)/Cl(‑) exchange transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273172,9790GT 6.2% 854.8 / 19.7 226A462A (GCG→GCT) clcAH(+)/Cl(‑) exchange transporter
Reads supporting (aligned to +/- strand):  ref base G (77/135);  new base T (10/4);  total (87/139)
Fisher's exact test for biased strand distribution p-value = 1.97e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 229 total aligned reads displayed.

GATGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGTAGCACTGCCGCTGGAG  >  CP009273/172835‑173126
                                                                                                                                                |                                                                                                                                                    
gaTGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGa                                                                                                                                                   <  2:275398/148‑1 (MQ=255)
 aTGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGaa                                                                                                                                                  >  1:1021366/1‑148 (MQ=255)
 aTGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGaa                                                                                                                                                  <  2:1048109/148‑1 (MQ=255)
   gACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATACTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGc                                                                                                                                                >  2:2119890/1‑148 (MQ=255)
    aCCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCa                                                                                                                                               >  2:3022013/1‑148 (MQ=255)
      cGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCTCGAAGCAAg                                                                                                                                             >  2:735326/1‑148 (MQ=255)
       gATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCTCGAAGCAAgg                                                                                                                                            >  1:1239302/1‑148 (MQ=255)
         tAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGcc                                                                                                                                          >  1:150813/1‑148 (MQ=255)
          aaCTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCg                                                                                                                                         >  2:3174012/1‑148 (MQ=255)
          aaCTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCg                                                                                                                                         >  2:2780714/1‑148 (MQ=255)
          aaCTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCg                                                                                                                                         >  2:1274250/1‑148 (MQ=255)
           aCTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCTCGAAGCCAGGCCGc                                                                                                                                        >  1:319011/1‑148 (MQ=255)
             tACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCAt                                                                                                                                      <  2:3126063/148‑1 (MQ=255)
               ccAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATca                                                                                                                                    >  2:2367142/1‑148 (MQ=255)
               ccAGCTCATTTTGCCAATGATTAGTACCGGTCTTGGCGCAACACTATGAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATca                                                                                                                                    <  2:1349122/148‑1 (MQ=255)
                  gCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATcagcc                                                                                                                                 >  2:1795127/1‑148 (MQ=255)
                   cTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATcagcca                                                                                                                                >  1:2815000/1‑148 (MQ=255)
                        tttGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCgag                                                                                                                           >  2:1019316/1‑148 (MQ=255)
                        tttGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCgag                                                                                                                           >  1:880843/1‑148 (MQ=255)
                         ttGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCgaga                                                                                                                          >  2:2560227/1‑148 (MQ=255)
                          tGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGaa                                                                                                                         <  1:1166542/148‑1 (MQ=255)
                              aaTGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACt                                                                                                                     <  2:2593597/148‑1 (MQ=255)
                              aaTGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACt                                                                                                                     <  2:421890/148‑1 (MQ=255)
                              aaTGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACt                                                                                                                     >  2:95655/1‑148 (MQ=255)
                               aTGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCTGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACtt                                                                                                                    <  1:2592953/148‑1 (MQ=255)
                               aTGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACtt                                                                                                                    <  2:2097014/148‑1 (MQ=255)
                                 gATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGa                                                                                                                  >  1:1274992/1‑148 (MQ=255)
                                 gATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGa                                                                                                                  >  1:1275064/1‑148 (MQ=255)
                                 gATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGa                                                                                                                  >  1:855573/1‑148 (MQ=255)
                                  attattACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGaa                                                                                                                 <  1:2402128/148‑1 (MQ=255)
                                  attattACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGaa                                                                                                                 <  2:3276089/148‑1 (MQ=255)
                                   ttattaCCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAAc                                                                                                                >  1:172356/1‑148 (MQ=255)
                                        aCCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAAt                                                                                                          <  2:518310/148‑1 (MQ=255)
                                         ccGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATa                                                                                                         <  2:1048616/148‑1 (MQ=255)
                                          cGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATAc                                                                                                        >  2:1209676/1‑148 (MQ=255)
                                           ggTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATAcc                                                                                                       <  2:1097256/148‑1 (MQ=255)
                                            gTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCa                                                                                                      <  1:3008688/148‑1 (MQ=255)
                                             tCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAg                                                                                                     >  2:1383289/1‑148 (MQ=255)
                                             tCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAg                                                                                                     >  1:691769/1‑148 (MQ=255)
                                              cTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAgg                                                                                                    >  2:1820441/1‑148 (MQ=255)
                                               ttGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAggg                                                                                                   <  1:3114897/148‑1 (MQ=255)
                                                 ggCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATACTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTa                                                                                                 <  2:2201065/148‑1 (MQ=255)
                                                 ggCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATACTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTa                                                                                                 <  2:1070029/148‑1 (MQ=255)
                                                  gcgcAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTAt                                                                                                <  1:110783/148‑1 (MQ=255)
                                                   cgcAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTAtt                                                                                               <  2:1956173/148‑1 (MQ=255)
                                                     cAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAg                                                                                             >  1:460693/1‑148 (MQ=255)
                                                     cAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAg                                                                                             <  1:1702671/148‑1 (MQ=255)
                                                         acTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATACTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATaa                                                                                         <  1:2090868/148‑1 (MQ=255)
                                                            aTTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATgg                                                                                      >  1:1666675/1‑148 (MQ=255)
                                                               aGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCTCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGa                                                                                   <  2:1239302/148‑1 (MQ=255)
                                                               aGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGa                                                                                   <  1:1082851/148‑1 (MQ=255)
                                                                 cgcAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGatt                                                                                 <  2:199264/148‑1 (MQ=255)
                                                                 cgcAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGatt                                                                                 <  2:1869611/148‑1 (MQ=255)
                                                                    aaTTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACCGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACGAAAATACCAGGGTATTAGATAATGGCGattat                                                                               <  2:2681933/148‑1 (MQ=255)
                                                                      tttACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGattattat                                                                            >  2:1640388/1‑148 (MQ=255)
                                                                      tttACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGattattat                                                                            <  2:1028053/148‑1 (MQ=255)
                                                                      tttACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGattattat                                                                            >  2:743091/1‑148 (MQ=255)
                                                                       ttACCGGCTGGAAACCGCTATACTCGGCGATACTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGattattatt                                                                           >  1:2745339/1‑148 (MQ=255)
                                                                       ttACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGattattatt                                                                           >  1:2282080/1‑148 (MQ=255)
                                                                         aCCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTgg                                                                         <  2:2654030/148‑1 (MQ=255)
                                                                               gggAAACCGCTATACTCGGCGATTCTTGCGCTCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGa                                                                   <  1:2180675/148‑1 (MQ=255)
                                                                                ggAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGaa                                                                  <  2:3200712/148‑1 (MQ=255)
                                                                                ggAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGaa                                                                  >  1:1391327/1‑148 (MQ=255)
                                                                                 gAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAACACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAAt                                                                 <  2:2036216/148‑1 (MQ=255)
                                                                                 gAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGTGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAAt                                                                 <  2:444265/148‑1 (MQ=255)
                                                                                 gAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAAt                                                                 <  2:2695985/148‑1 (MQ=255)
                                                                                  aaaCCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAAtt                                                                >  1:2987334/1‑148 (MQ=255)
                                                                                      cGCTATACTCGGCGATACTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGcc                                                            <  1:1236903/148‑1 (MQ=255)
                                                                                        cTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCa                                                          >  1:2137384/1‑148 (MQ=255)
                                                                                          ataCTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAAt                                                        >  1:964829/1‑148 (MQ=255)
                                                                                            aCTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTg                                                      <  2:1507420/148‑1 (MQ=255)
                                                                                            aCTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTg                                                      >  1:1988058/1‑148 (MQ=255)
                                                                                            aCTCGGCGATACTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTg                                                      >  1:806484/1‑148 (MQ=255)
                                                                                                 gCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGAGTATTATTGGGTTAGAATTTGCCCAATTTCCGAt                                                 >  1:1463369/1‑148 (MQ=255)
                                                                                                  cGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATg                                                <  2:1214087/148‑1 (MQ=255)
                                                                                                   gATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGt                                               <  2:2964567/148‑1 (MQ=255)
                                                                                                   gATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGCTAGAATTTGCCCAATTGCCGATGt                                               <  2:2964529/148‑1 (MQ=255)
                                                                                                     ttCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCg                                             >  1:1551310/1‑148 (MQ=255)
                                                                                                      tCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGt                                            <  2:1466712/148‑1 (MQ=255)
                                                                                                      tCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGt                                            <  2:367012/148‑1 (MQ=255)
                                                                                                        ttGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGttt                                          <  1:2119890/148‑1 (MQ=255)
                                                                                                             cgcACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGc                                     <  2:868169/148‑1 (MQ=255)
                                                                                                                 cGCTGGCAAAACAGGAAGCTGAGCAACTGGCTCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCaaaa                                 >  2:2089227/1‑148 (MQ=255)
                                                                                                                     ggCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATg                             <  2:243217/148‑1 (MQ=255)
                                                                                                                     ggCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATg                             <  2:855573/148‑1 (MQ=255)
                                                                                                                          aaCAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGtga                        <  1:1019316/148‑1 (MQ=255)
                                                                                                                          aaCAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGtga                        >  1:2773910/1‑148 (MQ=255)
                                                                                                                              ggAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCTAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGACCAATTGCCGATGTCGTTTGGAGCAAAAGATGAGTGATGAc                    >  1:1829190/1‑148 (MQ=255)
                                                                                                                              ggAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGAc                    <  2:2745339/148‑1 (MQ=255)
                                                                                                                               gAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACg                   >  1:2006451/1‑148 (MQ=255)
                                                                                                                               gAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACg                   >  2:1120538/1‑148 (MQ=255)
                                                                                                                               gAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACg                   >  1:337040/1‑148 (MQ=255)
                                                                                                                                aaGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGt                  <  2:150813/148‑1 (MQ=255)
                                                                                                                                   cTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGTAGc               >  2:1393886/1‑148 (MQ=255)
                                                                                                                                      aGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGTAGCACt            >  2:1103033/1‑148 (MQ=255)
                                                                                                                                       gCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGTAGCACTg           <  1:1049788/148‑1 (MQ=255)
                                                                                                                                          aCTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGTAGCACTGCCg        <  1:2894761/148‑1 (MQ=255)
                                                                                                                                          aCTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGTAGCACTGCCg        <  2:292776/148‑1 (MQ=255)
                                                                                                                                           cTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGTAGCACTGCCGc       <  1:1274250/148‑1 (MQ=255)
                                                                                                                                           cTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGTAGCACTGCCGc       <  1:2780714/148‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
GATGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCGGCGATTCTTGCGCGCACGCTGGCAAAACAGGAAGCTGAGCAACTGGCGCGAAGCAAGGCCGCATCAGCCAGCGAGAATACTTGAACG‑AAATACCAGGGTATTAGATAATGGCGATTATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATATGAGTGATGACGTAGCACTGCCGCTGGAG  >  CP009273/172835‑173126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A