Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F309 I0 R1
|
1697 |
197.2 |
6627756 |
95.7% |
6342762 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,534,409 |
G→T |
88.7% |
V813V (GTC→GTA) |
narZ ← |
nitrate reductase 2 (NRZ), alpha subunit |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,534,409 | 0 | G | T | 88.7%
| 464.1
/ 52.5
| 190 | V813V (GTC→GTA) | narZ | nitrate reductase 2 (NRZ), alpha subunit |
| Reads supporting (aligned to +/- strand): ref base G (10/12); new base T (81/87); total (91/99) |
| Fisher's exact test for biased strand distribution p-value = 8.25e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 190 total aligned reads displayed.
TGAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACCAGCAGGTCG > CP009273/1534265‑1534553
|
tgAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTAcc > 1:1792084/1‑148 (MQ=255)
agCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTAccgccg > 2:2428135/1‑148 (MQ=255)
ctGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGa > 1:114362/1‑148 (MQ=255)
tGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGaa < 2:2614804/148‑1 (MQ=255)
ccGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAg > 2:3171183/1‑148 (MQ=255)
ccGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAg > 2:1681104/1‑148 (MQ=255)
ggAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCg < 1:1535318/148‑1 (MQ=255)
gagTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTTATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGAt < 2:1555087/148‑1 (MQ=255)
gagTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGAt < 1:397122/148‑1 (MQ=255)
gagTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGAt < 2:366222/148‑1 (MQ=255)
gTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGa < 2:2336599/148‑1 (MQ=255)
tCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGaa > 2:1552408/1‑148 (MQ=255)
tGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATaa < 2:955962/148‑1 (MQ=255)
tGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACCCCGGATCTACCGCCGCAGAAAGCGGCTGAATaa > 1:84165/1‑148 (MQ=255)
gCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATaaa < 1:296831/148‑1 (MQ=255)
gTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACgg < 2:468080/148‑1 (MQ=255)
tAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGa > 2:2880064/1‑148 (MQ=255)
aGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGAt < 2:1910621/148‑1 (MQ=255)
gTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCat > 2:1630726/1‑148 (MQ=255)
tGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCatat < 1:2347385/148‑1 (MQ=255)
tGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCatat < 1:2348519/148‑1 (MQ=255)
tGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCatat < 2:2028012/148‑1 (MQ=255)
tGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCACAAAGCGGATGAATAAACGGATGCatat > 1:1501178/1‑148 (MQ=255)
tGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCatat < 2:288067/148‑1 (MQ=255)
gTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATc < 2:1726683/148‑1 (MQ=255)
tAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAAAGGATGCATATcc > 2:1251110/1‑148 (MQ=255)
aTACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGa < 1:920589/148‑1 (MQ=255)
aTACCACGTCGGTTTCTTTGACAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGa < 1:1813098/148‑1 (MQ=255)
aCCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAgg < 2:2657872/148‑1 (MQ=255)
cACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGgtg < 1:2156974/148‑1 (MQ=255)
aCGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGgtgt < 1:1120755/148‑1 (MQ=255)
gTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTc < 2:2969508/148‑1 (MQ=255)
tCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCCGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCa > 2:2742310/1‑148 (MQ=255)
gTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCatat > 1:1008839/1‑148 (MQ=255)
tttCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATc > 1:514117/1‑148 (MQ=255)
tCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGt < 2:1463033/148‑1 (MQ=255)
tCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGt < 2:1508521/148‑1 (MQ=255)
tttGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCt < 2:849714/148‑1 (MQ=255)
tttGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCt < 2:2344178/148‑1 (MQ=255)
tttGCCAAGATGACCCACGCACACGTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCt < 2:2507898/148‑1 (MQ=255)
cAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGCTCTACCGCCGCAGAAAGCGGATGTATAAAAGGATGCAAATCCGAGGGGTTCATATAGTCTTTTTc > 1:696864/1‑148 (MQ=37)
aaGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCCGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCg > 2:1926052/1‑148 (MQ=255)
aGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGt > 2:201687/1‑148 (MQ=255)
gATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTa > 1:3020314/1‑148 (MQ=255)
gACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCa < 2:1794861/148‑1 (MQ=255)
gACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCa > 1:3284589/1‑148 (MQ=255)
cccACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAgg < 1:1692412/148‑1 (MQ=255)
cccACGCACACGTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAgg < 2:2251794/148‑1 (MQ=255)
ccACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGt < 2:3020314/148‑1 (MQ=255)
cacaCTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCgg > 2:1100834/1‑148 (MQ=255)
acacTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGt < 1:61112/148‑1 (MQ=255)
cacTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTg > 2:1154807/1‑148 (MQ=255)
cacTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTg > 1:2836783/1‑148 (MQ=255)
ttGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGc > 1:1879140/1‑148 (MQ=255)
tGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCa > 2:2038431/1‑148 (MQ=255)
tGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCa > 2:2510089/1‑148 (MQ=255)
cGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGa < 2:2588165/148‑1 (MQ=255)
aaaTGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACg < 1:3068855/148‑1 (MQ=255)
aaaTGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACg > 2:685505/1‑148 (MQ=255)
aaTGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTTCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACTGATGCAAAACCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGa > 1:2748156/1‑148 (MQ=25)
aaTGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGa > 1:1294425/1‑148 (MQ=255)
aTGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGat > 1:1519991/1‑148 (MQ=255)
tGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGata > 1:2195337/1‑148 (MQ=255)
tGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTACCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGata > 2:307469/1‑148 (MQ=255)
cTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGGAGAACGATATc < 1:520617/148‑1 (MQ=255)
ttGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCgg < 2:913927/148‑1 (MQ=255)
ggCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGgag > 2:2844527/1‑148 (MQ=255)
gCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGgaga < 1:1100816/148‑1 (MQ=255)
aCCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAAcagg > 2:2988683/1‑148 (MQ=255)
aCCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAAcagg > 2:303061/1‑148 (MQ=255)
ccTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAAcaggc > 2:2236622/1‑148 (MQ=255)
ccTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAAcaggc < 1:965914/148‑1 (MQ=255)
tttGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAAcaggcag > 2:1989911/1‑148 (MQ=255)
tAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTAc < 2:149658/148‑1 (MQ=255)
aTTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTgg > 1:3206265/1‑148 (MQ=255)
aTTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTgg > 2:1039947/1‑148 (MQ=255)
ttCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGAc < 2:2411749/148‑1 (MQ=255)
ttCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGAc < 2:218973/148‑1 (MQ=255)
ttCCCAGTCGCTGCGTGATTACCACGCCGGATATACCGCCGCAGAAAGCCGATGAATAAAACGATGCATATCCGAGGTGTTCATATCGTATTTTTAGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGAc > 1:346508/1‑148 (MQ=255)
cccAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATACGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACAt > 1:1345294/1‑148 (MQ=255)
cAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGc > 2:521800/1‑148 (MQ=255)
aGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCg > 2:43141/1‑148 (MQ=255)
tCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGa > 2:54292/1‑148 (MQ=255)
tCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGa < 1:2226255/148‑1 (MQ=255)
tCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGa > 1:1558937/1‑148 (MQ=255)
tCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGa < 1:894494/148‑1 (MQ=255)
cGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGaa > 2:3237457/1‑148 (MQ=255)
cGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGaa < 1:2617366/148‑1 (MQ=255)
gCTGCGTGAGTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAg < 2:623304/148‑1 (MQ=255)
cTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGt < 2:1524031/148‑1 (MQ=255)
tGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTc < 2:1021526/148‑1 (MQ=255)
tGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTc > 1:90664/1‑148 (MQ=255)
gCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCg > 1:1199781/1‑148 (MQ=255)
gATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCg > 1:1725132/1‑148 (MQ=255)
gATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCg > 2:2202668/1‑148 (MQ=255)
gATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCg > 1:2517341/1‑148 (MQ=255)
ttCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTc > 2:632527/1‑148 (MQ=255)
ccGGATCTAACGCCGCAGAAAGCGGATTAATAAACGGATGCATATCCGAGGTTTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACcagcag < 1:2059168/148‑1 (MQ=255)
ggATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACCAGCAGGt > 2:2764006/1‑148 (MQ=255)
ggATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACCAGCAGGt < 2:1381333/148‑1 (MQ=255)
|
TGAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACCAGCAGGTCG > CP009273/1534265‑1534553
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCTGTGAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACCAGCAGGTCGAGCTT > CP009273/1534260‑1534558
|
GGCTGTGAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCT < SRR19973070.82906/150‑1 (MQ=60)
TGTGAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACC > SRR19973070.1804598/1‑150 (MQ=60)
TGTGAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACC > SRR19973070.1804466/1‑150 (MQ=60)
GAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCC < SRR19973070.568926/150‑1 (MQ=60)
GAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCC < SRR19973070.1376137/150‑1 (MQ=60)
CTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACCCCGGATCGACCGCCGCAGA > SRR19973070.119297/1‑150 (MQ=60)
CTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGGGATTCCCACCCCCGATCGACCGCCGCAGA > SRR19973070.115413/1‑150 (MQ=60)
GGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGA < SRR19973070.1546101/150‑1 (MQ=60)
AGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATG < SRR19973070.2832583/150‑1 (MQ=60)
AGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTGTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATG < SRR19973070.3238450/150‑1 (MQ=60)
GAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGA < SRR19973070.400066/150‑1 (MQ=60)
GAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGA < SRR19973070.400040/150‑1 (MQ=60)
GTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAAT < SRR19973070.621038/150‑1 (MQ=60)
CATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACCCCGGATCTACCGCCGCAGAAAGCGGCTGAATAA > SRR19973070.85024/1‑150 (MQ=60)
TGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAAC < SRR19973070.174789/150‑1 (MQ=60)
GCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACG < SRR19973070.298885/150‑1 (MQ=60)
GCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACG < SRR19973070.1829913/150‑1 (MQ=60)
GTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGAT < SRR19973070.2530399/150‑1 (MQ=60)
GGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCCCGCACACTTGCGAAAATGCTTTGGCGATACCGTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCCGCAAGCGGATGGATTAACGGATGCAT > SRR19973070.1280161/1‑150 (MQ=60)
GTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCACAAAGCGGATGAATAAACGGATGCATAT > SRR19973070.1511690/1‑150 (MQ=60)
TGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCC < SRR19973070.2364095/150‑1 (MQ=60)
TGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCC < SRR19973070.2362954/150‑1 (MQ=60)
ATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGG < SRR19973070.927153/150‑1 (MQ=60)
ATACCACGTCGGTTTCTTTGACAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGG < SRR19973070.1825594/150‑1 (MQ=60)
TACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAAAGGATGCAAATCCGAGGT > SRR19973070.155994/1‑150 (MQ=60)
CCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGT < SRR19973070.3183926/150‑1 (MQ=60)
CACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTT > SRR19973070.2229928/1‑150 (MQ=60)
CACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTT < SRR19973070.2171316/150‑1 (MQ=60)
ACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTC < SRR19973070.1128422/150‑1 (MQ=60)
CGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATAT > SRR19973070.1016018/1‑150 (MQ=60)
GGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATC > SRR19973070.517643/1‑150 (MQ=60)
TTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTG > SRR19973070.2342349/1‑150 (MQ=60)
GCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGCTCTACCGCCGCAGAAAGCGGATGTATAAAAGGATGCAAATCCGAGGGGTTCATATAGTCTTTTTC > SRR19973070.701833/1‑150 (MQ=60)
GCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTC < SRR19973070.1146762/150‑1 (MQ=60)
AAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCAGCAGAAAGCGGATGAATAAACGGATGCATATCAGAGGTGTTCATATCGTCTTTTTCTTA > SRR19973070.3039565/1‑150 (MQ=60)
ATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCA > SRR19973070.3305679/1‑150 (MQ=60)
CCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTG < SRR19973070.1704051/150‑1 (MQ=60)
CACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTG < SRR19973070.2206423/150‑1 (MQ=60)
CACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTG > SRR19973070.2855143/1‑150 (MQ=60)
ACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGG < SRR19973070.61806/150‑1 (MQ=60)
ACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGG > SRR19973070.3011121/1‑150 (MQ=60)
ACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGC > SRR19973070.1891928/1‑150 (MQ=60)
CTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGNCA < SRR19973070.307242/150‑1 (MQ=60)
GAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACG < SRR19973070.2865549/150‑1 (MQ=60)
AAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTTCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACTGATGCAAAACCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGA > SRR19973070.2765816/1‑150 (MQ=60)
AAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGA > SRR19973070.1303440/1‑150 (MQ=60)
AAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAAGAAACCGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGA > SRR19973070.1303441/1‑150 (MQ=60)
AAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGAT > SRR19973070.1530657/1‑150 (MQ=60)
AAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGAT < SRR19973070.3088542/150‑1 (MQ=60)
AATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATA > SRR19973070.2209828/1‑150 (MQ=60)
CTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGGAGAACGATATCGG < SRR19973070.523908/150‑1 (MQ=60)
CTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGGAGAACGATATCGG < SRR19973070.524160/150‑1 (MQ=60)
GCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAAC < SRR19973070.1108378/150‑1 (MQ=60)
GCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAAC < SRR19973070.1108397/150‑1 (MQ=60)
GCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAAC < SRR19973070.2049135/150‑1 (MQ=60)
GATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAG > SRR19973070.2140286/1‑150 (MQ=60)
TACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGGACGATATCGGAGAACAGGC > SRR19973070.1534735/1‑150 (MQ=60)
CCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAG < SRR19973070.2637699/150‑1 (MQ=60)
CCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAG < SRR19973070.972813/150‑1 (MQ=60)
TTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTA < SRR19973070.1529554/150‑1 (MQ=60)
AGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGG > SRR19973070.3227004/1‑150 (MQ=60)
ATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGAC > SRR19973070.349394/1‑150 (MQ=60)
ATTTCCCAGTCGCTGCGTGATTACCACGCCGGATATACCGCCGCAGAAAGCCGATGAATAAAACGATGCATATCCGAGGTGTTCATATCGTATTTTTAGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGAC > SRR19973070.349030/1‑150 (MQ=60)
TTCCCAGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATACGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACAT > SRR19973070.1354527/1‑150 (MQ=60)
AGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGA > SRR19973070.1714418/1‑150 (MQ=60)
AGTCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGA > SRR19973070.1569909/1‑150 (MQ=60)
TCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAG < SRR19973070.900835/150‑1 (MQ=60)
TCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAG < SRR19973070.2240892/150‑1 (MQ=60)
TCGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAG < SRR19973070.900823/150‑1 (MQ=60)
CGCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGT < SRR19973070.2634441/150‑1 (MQ=60)
GCTGCGTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTC > SRR19973070.91570/1‑150 (MQ=60)
CTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCG > SRR19973070.1208206/1‑150 (MQ=60)
CGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGC < SRR19973070.801195/150‑1 (MQ=60)
GTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCG > SRR19973070.1737075/1‑150 (MQ=60)
GTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCG > SRR19973070.2533957/1‑150 (MQ=60)
GTGATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCG > SRR19973070.2533742/1‑150 (MQ=60)
ATTCCCACGCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCA > SRR19973070.875297/1‑150 (MQ=60)
GCCGGATCTACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACCAGCAGG < SRR19973070.923081/150‑1 (MQ=60)
CCGGATCTAACGCCGCAGAAAGCGGATTAATAAACGGATGCATATCCGAGGTTTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACCAGCAGGT < SRR19973070.2073071/150‑1 (MQ=60)
TACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACCAGCAGGTCGAGCTT < SRR19973070.2898712/150‑1 (MQ=60)
|
GGCTGTGAGAGCTCTGCCGGAGAGTCATGCAGTAGGGGTTGTAATACCACGTCGGTTTCTTTGCCAAGATGACCCACGCACACTTGCGAAAATGCTTTGGCGATACCTTTGTAGATTTCCCAGTCGCTGCGTGATTCCCACGCCGGATCGACCGCCGCAGAAAGCGGATGAATAAACGGATGCATATCCGAGGTGTTCATATCGTCTTTTTCGTACCAGGTGGCGGTGGGCAGAACGATATCGGAGAACAGGCAGGTACTGGACATGCGGAAGTCGAGCGTCACCAGCAGGTCGAGCTT > CP009273/1534260‑1534558
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |