Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F368 I0 R1
|
1472 |
214.4 |
7116750 |
95.9% |
6824963 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,833,664 |
C→A |
5.6% |
S30S (TCC→TCA) |
yicS → |
putative periplasmic protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,833,664 | 0 | C | A | 5.6%
| 958.3
/ 19.2
| 256 | S30S (TCC→TCA) | yicS | putative periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base C (105/136); new base A (9/6); total (114/142) |
| Fisher's exact test for biased strand distribution p-value = 2.85e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 261 total aligned reads displayed.
GATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGCGAGGCCATCGTGGCGATGGAACG > CP009273/3833517‑3833810
|
ttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTcc < 2:2198980‑M1/103‑1 (MQ=255)
tatttaagttatattggttttctggagattcagggggccagtctAAAGTTTGAATCCATGAACCCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCg > 2:3051652‑M1/45‑148 (MQ=255)
tatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCg > 2:2225802‑M1/45‑148 (MQ=255)
tttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCa < 1:3272575‑M1/106‑1 (MQ=255)
ttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCaa < 1:3377203‑M1/107‑1 (MQ=255)
ttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCaa < 2:2181367‑M1/107‑1 (MQ=255)
ttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCaa < 1:1697751‑M1/107‑1 (MQ=255)
aagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCaaaa < 1:549440‑M1/109‑1 (MQ=255)
atattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGaa < 2:1103257‑M1/114‑1 (MQ=255)
tattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGaaa < 2:2305223‑M1/115‑1 (MQ=255)
attggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGaaaa < 1:2651451‑M1/116‑1 (MQ=255)
tggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAAcc < 1:1837882‑M1/118‑1 (MQ=255)
ggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCa > 2:745063‑M1/30‑148 (MQ=255)
gttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCAc < 1:3424884‑M1/120‑1 (MQ=255)
ttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACg < 1:2242640‑M1/121‑1 (MQ=255)
ttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACg < 2:3234619‑M1/121‑1 (MQ=255)
ttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACg < 1:2939945‑M1/121‑1 (MQ=255)
ttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACg < 2:835347‑M1/121‑1 (MQ=255)
gtggagattcagggggcaagtctAAAGGTTTAATCCATCAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTAt > 2:2785471‑M1/24‑148 (MQ=255)
ctggatattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTAt > 2:2991353‑M1/24‑148 (MQ=255)
gttttttctgggggccattatAATGGTTTAATCCATGAACCCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTa > 1:2906975‑M1/22‑148 (MQ=255)
ggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTa < 2:1352874‑M1/127‑1 (MQ=255)
ggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTa < 2:2333824‑M1/127‑1 (MQ=255)
ttcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGa < 2:301836‑M1/132‑1 (MQ=255)
tgcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGa < 2:1953984‑M1/132‑1 (MQ=255)
tcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGAt < 2:2803267‑M1/133‑1 (MQ=255)
ggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTCTTACAAGATTTAc < 1:2582270‑M1/137‑1 (MQ=255)
gccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTa < 1:3200185‑M1/140‑1 (MQ=255)
cagtctAAAGGTTTAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTaaa > 2:3431987‑M1/7‑148 (MQ=255)
cagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTaaa < 1:3296107‑M1/142‑1 (MQ=255)
agtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTaaaa < 2:2025056‑M1/143‑1 (MQ=255)
tAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTg < 2:1447169‑M1/147‑1 (MQ=255)
AAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGc < 1:2052558‑M1/148‑1 (MQ=255)
AAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTAACGTAAAATTTGc < 2:770966‑M1/148‑1 (MQ=255)
aGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCAc > 1:931767/1‑148 (MQ=255)
ttGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGcc > 1:332841/1‑148 (MQ=255)
tGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTc > 2:2816484/1‑148 (MQ=255)
gAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCa > 2:480391/1‑148 (MQ=255)
gAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCa < 2:1058210/148‑1 (MQ=255)
gAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCa > 2:714398/1‑148 (MQ=255)
aaCCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCAtt < 1:256046/148‑1 (MQ=255)
aCGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAg < 2:2740057/148‑1 (MQ=255)
cGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGa > 2:3161439/1‑148 (MQ=255)
acacTACTTCTTTTTTTCAATTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCCAAAAAGATAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATg < 1:1524826/148‑1 (MQ=255)
acacTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATg > 1:1129825/1‑148 (MQ=255)
acacTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATg > 1:1262530/1‑148 (MQ=255)
acaaTACTGATTATTTTCACTTTTTTCGCTATGCCAGGAATCTTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATg < 1:663357/148‑1 (MQ=255)
cacTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCAAGTCGCCTTTTAGCTCCCTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGa > 2:3524983/1‑148 (MQ=255)
actactGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGaa < 1:859937/148‑1 (MQ=255)
actactGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGaa > 1:586635/1‑148 (MQ=255)
actactGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGaa < 1:1293395/148‑1 (MQ=255)
ctactGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAg > 2:263506/1‑148 (MQ=255)
tactGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGc < 2:1837882/148‑1 (MQ=255)
actGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCg > 1:3072983/1‑148 (MQ=255)
actGATTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCg < 1:1348279/148‑1 (MQ=255)
tGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTg > 2:872589/1‑148 (MQ=255)
gCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTgg > 1:2184414/1‑148 (MQ=255)
ttATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGa > 1:1726809/1‑148 (MQ=255)
aTTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTCTTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGaaa > 1:1367307/1‑148 (MQ=255)
ttttCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGaaaa > 2:1688080/1‑148 (MQ=255)
tttCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAg > 1:2368083/1‑148 (MQ=255)
ttCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGt < 1:3098785/148‑1 (MQ=255)
tCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGtt < 1:218684/148‑1 (MQ=255)
cTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAAt < 1:2181367/148‑1 (MQ=255)
tttttCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAAtgt < 1:3371657/148‑1 (MQ=255)
ttCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAAtgttgt < 1:1666547/148‑1 (MQ=255)
ttCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAAtgttgt < 2:1210722/148‑1 (MQ=255)
ttCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAAtgttgt > 1:2498049/1‑148 (MQ=255)
cTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGa > 1:22895/1‑148 (MQ=255)
cTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGa > 2:448506/1‑148 (MQ=255)
tATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGAt > 1:2461994/1‑148 (MQ=255)
aTGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATg > 2:2473683/1‑148 (MQ=255)
gCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGaa > 2:2890759/1‑148 (MQ=255)
ccAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGaaa > 2:271568/1‑148 (MQ=255)
aGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAAc > 1:1221426/1‑148 (MQ=255)
ggCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCAAGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAATTTAATGTTGTCAGATGAAAAcc > 1:3294966/1‑147 (MQ=255)
ggCATCGTATACGCCGAGTCGCCTTTTAGCTCACGGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACa < 2:1856160/148‑1 (MQ=255)
gCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACaa < 1:698932/148‑1 (MQ=255)
cATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAAt > 2:2353672/1‑148 (MQ=255)
cATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAAt < 2:2939421/148‑1 (MQ=255)
aTCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATa > 2:244443/1‑148 (MQ=255)
tCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATaa < 2:931767/148‑1 (MQ=255)
tCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATaa < 2:2052719/148‑1 (MQ=255)
tCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATaa < 2:591554/148‑1 (MQ=255)
cGTATACGCCGAGTCGCCTTTTAGCTAACTGAAGTCCGAAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATaaa < 1:1605060/148‑1 (MQ=255)
ataCGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAaacaa > 1:2748531/1‑148 (MQ=255)
ataCGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAaacaa > 1:2101166/1‑148 (MQ=255)
cGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACat < 1:2806892/148‑1 (MQ=255)
gCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACata > 1:452702/1‑148 (MQ=255)
ccGAGTCGCCTTTTACCTCACTGCAGTCCGAAAAAGACAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACatat < 1:921003/148‑1 (MQ=255)
cGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACAtata < 2:3377203/148‑1 (MQ=255)
cGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACAtata < 2:1620590/148‑1 (MQ=255)
ccTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGCGAgg > 1:2875184/1‑148 (MQ=255)
cTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGCGAGGc > 1:1678202/1‑148 (MQ=255)
tttgAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGAGAGGcc > 2:112510/1‑148 (MQ=255)
aGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGCGAGGCCATCg < 2:279326/148‑1 (MQ=255)
gTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGCGAGGCCATCGTGGCGATGGaa > 1:349326/1‑148 (MQ=255)
gTCCGAAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGCGAGGCCATCGTGGCGATGGaa < 1:1010484/148‑1 (MQ=255)
ccGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGCGAGGCCATCGTGGCGATGGAACg < 1:3205223/148‑1 (MQ=255)
ccGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGCGAGGCCATCGTGGCGATGGAACg < 1:1953984/148‑1 (MQ=255)
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GATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAAAGTTAATGTTGTCAGATGAAAACAATAAACAACATATACGCGAGGCCATCGTGGCGATGGAACG > CP009273/3833517‑3833810
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
