Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F394 I0 R1 1342 215.0 7134094 96.2% 6862998 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,245,611 G→T 39.2% F228L (TTC→TTA)  dhaK ← dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,245,6110GT39.2% 211.3 / 167.8 171F228L (TTC→TTA) dhaKdihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit
Reads supporting (aligned to +/- strand):  ref base G (48/56);  new base T (38/29);  total (86/85)
Fisher's exact test for biased strand distribution p-value = 2.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01

Only 100 of 184 total aligned reads displayed.

CCGATCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGATTATTCAGC  >  CP009273/1245464‑1245758
                                                                                                                                                   |                                                                                                                                                   
 cGATCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAgaga                                                                                                                                                    <  2:2892155/148‑1 (MQ=255)
  gATCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATaa                                                                                                                                                   <  1:101175/148‑1 (MQ=255)
  gATCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATaa                                                                                                                                                   <  1:692785/148‑1 (MQ=255)
  gATCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGaa                                                                                                                                                   <  2:1487986/148‑1 (MQ=255)
   aTCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAg                                                                                                                                                  <  1:381931/148‑1 (MQ=255)
    tCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAgg                                                                                                                                                 <  1:184371/148‑1 (MQ=255)
    tCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAgg                                                                                                                                                 >  2:802704/1‑148 (MQ=255)
    tCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTATTCCTGCCAACTGCCGTGTTGATAATACCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGGTTGATCAAGGGAAGAGAAgg                                                                                                                                                 >  1:2719809/1‑148 (MQ=255)
           aCTGGAGCGTTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGgcggcg                                                                                                                                          <  1:3430959/148‑1 (MQ=255)
               gAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTTTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCa                                                                                                                                      <  2:434204/148‑1 (MQ=255)
                 gCGGTTGTTTGGTTTGTTGTTCTTCCTTCAAAGTGCGTTTTTGATAATCCAAGAAACGCAAAGTGCGATGGTTTTTGCCTTTTACCAGCTGTGTGTCGAACATTTAATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAAt                                                                                                                                    <  1:903271/148‑1 (MQ=255)
                 gCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAAt                                                                                                                                    <  1:315809/148‑1 (MQ=255)
                  cGGTTGTTTGGTTTGTTGTTCTTCCTGCCACCGGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATa                                                                                                                                   <  1:601854/148‑1 (MQ=255)
                         ttggtttgTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCt                                                                                                                            >  2:494781/1‑148 (MQ=255)
                         ttggtttgTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCt                                                                                                                            >  1:2091255/1‑148 (MQ=255)
                           ggtttgTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCa                                                                                                                          <  1:3351609/148‑1 (MQ=255)
                           ggtttgTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCa                                                                                                                          <  2:1856819/148‑1 (MQ=255)
                                 ttgttCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGa                                                                                                                    <  2:3137042/148‑1 (MQ=255)
                                 ttgttCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGa                                                                                                                    <  1:1532223/148‑1 (MQ=255)
                                  tgttCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCTGCTCACCATGaa                                                                                                                   <  2:2085500/148‑1 (MQ=255)
                                  tgttCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGaa                                                                                                                   <  2:1020389/148‑1 (MQ=255)
                                  tgttCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGaa                                                                                                                   <  1:747716/148‑1 (MQ=255)
                                  tgttCTTCCTGCCAACTGCCTTGTTGATAATCACAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGCCTCACCAAGaa                                                                                                                   >  2:3467027/1‑148 (MQ=255)
                                        tcCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGa                                                                                                             >  1:1178644/1‑148 (MQ=255)
                                             ccAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCa                                                                                                        >  2:2581321/1‑148 (MQ=255)
                                              cAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCaa                                                                                                       >  2:1660471/1‑148 (MQ=255)
                                              cAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCaa                                                                                                       >  2:3423697/1‑148 (MQ=255)
                                               aaCTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCaaa                                                                                                      <  1:1602517/148‑1 (MQ=255)
                                                aCTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAAc                                                                                                     <  2:1618725/148‑1 (MQ=255)
                                                aCTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAAc                                                                                                     >  1:1765841/1‑148 (MQ=255)
                                                 cTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACt                                                                                                    <  1:1034595/148‑1 (MQ=255)
                                                    ccTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCa                                                                                                 >  2:831930/1‑148 (MQ=255)
                                                     cTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCAt                                                                                                <  2:3136675/148‑1 (MQ=255)
                                                        gttgATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCAtctc                                                                                             <  2:2641346/148‑1 (MQ=255)
                                                        gttgATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCAtctc                                                                                             <  2:3489339/148‑1 (MQ=255)
                                                         ttgATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCa                                                                                            <  2:1173501/148‑1 (MQ=255)
                                                          tgATAATCCCAGAAACGCAAAGTGCTATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGTTCAAGGGAAGATAATGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCAt                                                                                           <  2:1323504/148‑1 (MQ=255)
                                                          tgATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCAt                                                                                           >  2:1271018/1‑148 (MQ=255)
                                                          tgATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCAt                                                                                           >  2:3047562/1‑148 (MQ=255)
                                                          tgATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTGTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCAt                                                                                           >  1:982358/1‑148 (MQ=255)
                                                           gATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCAtt                                                                                          <  1:1972969/148‑1 (MQ=255)
                                                           gATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCAtt                                                                                          <  1:165509/148‑1 (MQ=255)
                                                             tAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTAt                                                                                        <  1:234383/148‑1 (MQ=255)
                                                                 cccAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGc                                                                                    <  1:2331451/148‑1 (MQ=255)
                                                                 cccAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGc                                                                                    >  2:2860568/1‑148 (MQ=255)
                                                                 cccAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGc                                                                                    >  2:2860273/1‑148 (MQ=255)
                                                                 cccAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGc                                                                                    >  2:1083814/1‑148 (MQ=255)
                                                                 cccAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGc                                                                                    >  2:1083750/1‑148 (MQ=255)
                                                                   cAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCa                                                                                  <  1:1548765/148‑1 (MQ=255)
                                                                   cAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCa                                                                                  <  1:644682/148‑1 (MQ=255)
                                                                     gAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAgg                                                                                <  1:1757729/148‑1 (MQ=255)
                                                                        aCGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTa                                                                             >  1:1064718/1‑148 (MQ=255)
                                                                        aCGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTa                                                                             >  2:708866/1‑148 (MQ=255)
                                                                           cAAAGTGCGATGGTATGAGCCATATACAAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCAGCTCATTATCCGCCAGGGTcaaa                                                                          >  2:2882061/1‑148 (MQ=255)
                                                                             aaGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAaaga                                                                        >  1:1278207/1‑148 (MQ=255)
                                                                              aGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAaagaa                                                                       >  2:2430119/1‑148 (MQ=255)
                                                                                 gCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGt                                                                    <  1:2115600/148‑1 (MQ=255)
                                                                                 gCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGt                                                                    <  1:2598903/148‑1 (MQ=255)
                                                                                         aTGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCcgc                                                            >  1:3241010/1‑148 (MQ=255)
                                                                                           gAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCgg                                                          >  1:850006/1‑148 (MQ=255)
                                                                                             gCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCa                                                        >  1:939845/1‑148 (MQ=255)
                                                                                               cATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCacg                                                      <  2:1959703/148‑3 (MQ=255)
                                                                                                aTTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGa                                                     <  2:2556173/148‑1 (MQ=255)
                                                                                                 tttACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGaa                                                    <  1:724609/148‑1 (MQ=255)
                                                                                                  ttACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAAc                                                   <  1:2959581/148‑1 (MQ=255)
                                                                                                     ccAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGt                                                >  1:2322377/1‑148 (MQ=255)
                                                                                                       agcagGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTAc                                              >  1:3003819/1‑148 (MQ=255)
                                                                                                        gcagGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACa                                             >  1:2167008/1‑148 (MQ=255)
                                                                                                        gcagGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACa                                             <  1:1853579/148‑1 (MQ=255)
                                                                                                        gcagGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACa                                             <  1:3523969/148‑1 (MQ=255)
                                                                                                        gcagGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACa                                             <  1:49790/148‑1 (MQ=255)
                                                                                                          agGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAgg                                           >  2:3455147/1‑148 (MQ=255)
                                                                                                            ggTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCa                                         >  2:3331807/1‑148 (MQ=255)
                                                                                                               gtCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCg                                      <  1:2585857/148‑1 (MQ=255)
                                                                                                                 cGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCgag                                    <  1:2120964/148‑1 (MQ=255)
                                                                                                                      aTTTCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGa                               >  1:837815/1‑148 (MQ=255)
                                                                                                                      aTTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGa                               >  2:625048/1‑148 (MQ=255)
                                                                                                                      aTTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAAAGGTACAGGCACCGAGAGCGa                               >  2:38006/1‑148 (MQ=255)
                                                                                                                        ttCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa                             >  2:506668/1‑148 (MQ=255)
                                                                                                                        ttCATCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa                             <  2:1692443/148‑1 (MQ=255)
                                                                                                                            tCGACGGTTTGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTa                         >  2:3206267/1‑148 (MQ=255)
                                                                                                                            tCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTa                         >  1:1945656/1‑148 (MQ=255)
                                                                                                                                cGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGa                     <  2:3482946/148‑1 (MQ=255)
                                                                                                                                   tttGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTCTTGAGTg                  >  1:2184594/1‑148 (MQ=255)
                                                                                                                                   tttGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTg                  >  1:1911653/1‑148 (MQ=255)
                                                                                                                                   tttGATCAAGGGAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTg                  >  2:2294779/1‑148 (MQ=255)
                                                                                                                                   tttGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGTCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGAGTTGCCCGCGGCAGGAACGGTCCAGGCACCGAGAGCGATACCTATTGAGTg                  >  1:1370138/1‑148 (MQ=255)
                                                                                                                                       aTCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCt              <  1:617854/148‑1 (MQ=255)
                                                                                                                                        tCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCtt             <  1:2298111/148‑1 (MQ=255)
                                                                                                                                         cAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTg            >  1:3158937/1‑148 (MQ=255)
                                                                                                                                            gggAAGATAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGatt         >  2:1587604/1‑148 (MQ=255)
                                                                                                                                            gggAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGatt         >  1:2446681/1‑148 (MQ=255)
                                                                                                                                            gggAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGatt         >  1:2011021/1‑148 (MQ=255)
                                                                                                                                             ggAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGatta        <  1:2430119/148‑1 (MQ=255)
                                                                                                                                             ggAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGatta        >  2:479128/1‑148 (MQ=255)
                                                                                                                                                agagAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGATTATTc     <  2:2885061/148‑1 (MQ=255)
                                                                                                                                                 gagaAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGATTATTCa    >  2:3194379/1‑148 (MQ=255)
                                                                                                                                                  agaAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGATTATTCAg   <  2:2091255/148‑1 (MQ=255)
                                                                                                                                                  agaAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGATTATTCAg   <  1:2581302/148‑1 (MQ=255)
                                                                                                                                                  agaAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGATTATTCAg   <  1:803585/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CCGATCGCCAGACTGGAGCGGTTGTTTGGTTTGTTGTTCTTCCTGCCAACTGCCTTGTTGATAATCCCAGAAACGCAAAGTGCGATGGTATGAGCCATTTACCAGCAGGGTGTCGAACATTTCATCGACGGTTTGATCAAGGGAAGAGAAGGGGCGGCGGTCAATACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTGAGTGGCCTTGATTATTCAGC  >  CP009273/1245464‑1245758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A