Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F142 I0 R1 859 274.6 8723680 96.4% 8409627 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,219,081 C→A 24.5% R475S (CGC→AGC)  yjbB → putative Na+/Pi‑cotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,219,0810CA24.5% 659.2 / 184.4 288R475S (CGC→AGC) yjbBputative Na+/Pi‑cotransporter
Reads supporting (aligned to +/- strand):  ref base C (78/138);  new base A (39/31);  total (118/170)
Fisher's exact test for biased strand distribution p-value = 5.00e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 288 total aligned reads displayed.

TGCTGACAAATCACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTG  >  CP009273/4218933‑4219229
                                                                                                                                                    |                                                                                                                                                    
tGCTGACAAATCACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCg                                                                                                                                                     <  2:3834609/150‑1 (MQ=255)
 gCTGACAAATCACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCgc                                                                                                                                                    <  1:2138539/150‑1 (MQ=255)
 gCTGACAAATCACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCgc                                                                                                                                                    <  1:588103/150‑1 (MQ=255)
       aaaTCACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCaaa                                                                                                                                              >  2:2979576/1‑150 (MQ=255)
        aaTCACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAAc                                                                                                                                             >  1:4204911/1‑150 (MQ=255)
           cACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATc                                                                                                                                          >  2:1719352/1‑150 (MQ=255)
           cACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATc                                                                                                                                          <  2:597416/150‑1 (MQ=255)
           cACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATc                                                                                                                                          >  2:1637120/1‑150 (MQ=255)
            acgggCAGCACGGCGGGCAGTTTCGCTTGATGGGTTGACGGAACTGGATGCGCTCTATGAGCAAGTGCTCAGTAATTTAAAGCTGGCACTGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCg                                                                                                                                         <  2:2351437/147‑1 (MQ=255)
            aCTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCg                                                                                                                                         >  2:1763339/1‑150 (MQ=255)
               ggCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGttt                                                                                                                                      >  1:4305859/1‑150 (MQ=255)
                gcagcaCGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGtttt                                                                                                                                     <  2:500318/150‑1 (MQ=255)
                  agcaCGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCg                                                                                                                                   >  2:759485/1‑150 (MQ=255)
                    caCGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCa                                                                                                                                 >  1:3392852/1‑150 (MQ=255)
                      cggcggGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCAtt                                                                                                                               >  2:2082774/1‑150 (MQ=255)
                       ggcggGCATGTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTc                                                                                                                              <  1:4079532/150‑1 (MQ=255)
                        gcggGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCt                                                                                                                             <  2:2536533/150‑1 (MQ=255)
                         cggGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCtt                                                                                                                            <  1:1151312/150‑1 (MQ=255)
                          gggCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTa                                                                                                                           <  2:2684225/150‑1 (MQ=255)
                          gggCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTa                                                                                                                           <  2:509178/150‑1 (MQ=255)
                            gCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAAt                                                                                                                         <  2:2179212/150‑1 (MQ=255)
                             cATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATc                                                                                                                        <  1:2257438/150‑1 (MQ=255)
                             cATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATc                                                                                                                        >  1:944402/1‑150 (MQ=255)
                              aTTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATcg                                                                                                                       <  1:1007819/150‑1 (MQ=255)
                               ttttCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATcgc                                                                                                                      >  2:2440459/1‑150 (MQ=255)
                                    gCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTa                                                                                                                 >  2:901863/1‑150 (MQ=255)
                                    gCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTa                                                                                                                 <  2:224718/150‑1 (MQ=255)
                                    gCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTa                                                                                                                 >  2:1284266/1‑150 (MQ=255)
                                        gATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTcc                                                                                                             >  2:1092792/1‑150 (MQ=255)
                                         aTGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTccc                                                                                                            <  2:2846148/150‑1 (MQ=255)
                                          tGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTccca                                                                                                           <  1:3248617/150‑1 (MQ=255)
                                          tGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTccca                                                                                                           >  1:4331845/1‑150 (MQ=255)
                                            ggTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTcccacg                                                                                                         <  2:3919157/150‑1 (MQ=255)
                                            ggTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTcccacg                                                                                                         <  2:1263077/150‑1 (MQ=255)
                                              ttGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTATTTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTcccacgcc                                                                                                       <  2:3656073/150‑1 (MQ=255)
                                              ttGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTcccacgcc                                                                                                       <  2:1379733/150‑1 (MQ=255)
                                                 aaGTAATTGGATGCGCTCTATGAGAATTTGCTCTGTAATTTAAAGCTGGCATTGTGGGTGTTCTTCTCTGGCTTTGTCACCAGCGCTCTTGGTTTGCGTCGAAGCAAACATCGTTTTCGAATTCTTAATCGCCGCTATTcccacgcccac                                                                                                    <  1:1226103/150‑1 (MQ=255)
                                                 aaGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTcccacgcccac                                                                                                    <  1:1363079/150‑1 (MQ=255)
                                                 aaGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTcccacgcccac                                                                                                    >  2:1453956/1‑150 (MQ=255)
                                                    gAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTc                                                                                                 <  2:1096636/150‑1 (MQ=255)
                                                    gAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTc                                                                                                 <  2:3416744/150‑1 (MQ=255)
                                                     aaCTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTTATCGCCGCTATTCCCACGCCCACGTCg                                                                                                <  1:3166940/150‑1 (MQ=255)
                                                      aCTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGa                                                                                               <  1:4107061/150‑1 (MQ=255)
                                                       cTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGAt                                                                                              <  1:3845063/150‑1 (MQ=255)
                                                        tGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATc                                                                                             <  2:2054959/150‑1 (MQ=255)
                                                        tGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATc                                                                                             <  1:1837864/150‑1 (MQ=255)
                                                        tGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATc                                                                                             <  2:4323871/150‑1 (MQ=255)
                                                        tGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATc                                                                                             <  2:3233378/150‑1 (MQ=255)
                                                         ggATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTGGCAGCAAACATCGTTTTAGCATTATTAATCGCCGCTATTCCCACGCCCACGTCGATCg                                                                                            >  1:753828/1‑150 (MQ=255)
                                                            tGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCt                                                                                         <  1:4243743/150‑1 (MQ=255)
                                                             gcgcTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTg                                                                                        <  1:2862954/150‑1 (MQ=255)
                                                              cgcTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGc                                                                                       <  2:1140667/150‑1 (MQ=255)
                                                               gcTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCa                                                                                      >  2:1345794/1‑150 (MQ=255)
                                                                  ctATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCa                                                                                   <  2:1185309/150‑1 (MQ=255)
                                                                  atATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCa                                                                                   <  1:885546/149‑1 (MQ=255)
                                                                    aTGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGc                                                                                 >  1:1706127/1‑150 (MQ=255)
                                                                    aTGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGc                                                                                 >  1:3970231/1‑150 (MQ=255)
                                                                     tGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCa                                                                                <  1:2871860/150‑1 (MQ=255)
                                                                          aaTTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACg                                                                           <  1:2325473/150‑1 (MQ=255)
                                                                             tGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGc                                                                        <  2:2029368/150‑1 (MQ=255)
                                                                              gCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCa                                                                       >  2:3324951/1‑150 (MQ=255)
                                                                                 cAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCGGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCagag                                                                    <  1:1994590/150‑1 (MQ=255)
                                                                                    tAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCAt                                                                 >  1:3498192/1‑150 (MQ=255)
                                                                                     aaTTTTAAGCTGGCTATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGGTGCAGAAAACATCGTTTTCGCTTTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCAtt                                                                <  2:1733254/150‑1 (MQ=255)
                                                                                     aaTTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCAtt                                                                <  1:2401146/150‑1 (MQ=255)
                                                                                     aaTTTAAAGCTGGCAATGTCGGTGTTCTTCTCGGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCAtt                                                                <  2:381227/150‑1 (MQ=255)
                                                                                        ttAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGaa                                                             >  2:1144031/1‑150 (MQ=255)
                                                                                            aGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCa                                                         <  2:3451623/150‑1 (MQ=255)
                                                                                            aGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCa                                                         >  2:2790883/1‑150 (MQ=255)
                                                                                                ggCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTc                                                     >  1:3068901/1‑150 (MQ=255)
                                                                                                ggCAAGGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTc                                                     <  2:1932882/150‑1 (MQ=255)
                                                                                                 gCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCg                                                    <  1:509058/150‑1 (MQ=255)
                                                                                                     tGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCCTTGAAACCACTTCGCTAc                                                >  1:1536797/1‑150 (MQ=255)
                                                                                                        cGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCAGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACAtt                                             >  1:2092961/1‑150 (MQ=255)
                                                                                                           tgtTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAg                                          <  1:1799291/150‑1 (MQ=255)
                                                                                                                ttctCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGCTCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTa                                     >  1:3700592/1‑150 (MQ=255)
                                                                                                                ttctCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTa                                     <  2:2301354/150‑1 (MQ=255)
                                                                                                                 tctcTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTAc                                    <  1:72598/150‑1 (MQ=255)
                                                                                                                 tctcTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTAc                                    <  1:2930948/150‑1 (MQ=255)
                                                                                                                 tctcTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTAc                                    <  2:3199256/150‑1 (MQ=255)
                                                                                                                 tctcTGGCGATGTCACCAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTAc                                    <  2:1010268/150‑1 (MQ=255)
                                                                                                                     tGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACgggg                                >  2:3737380/1‑150 (MQ=255)
                                                                                                                      ggCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGga                               >  1:1509571/1‑150 (MQ=255)
                                                                                                                         gATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGat                            <  2:1378918/150‑1 (MQ=255)
                                                                                                                         gATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACCGCGATCGCCAGCAACAGCCAAACGTGCCGAGCATTGAAAACAGTTCGCTACATTTAGGCTTTCGGGGCGat                            >  1:12785/1‑150 (MQ=255)
                                                                                                                          aTGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGata                           <  2:1921017/150‑1 (MQ=255)
                                                                                                                          aTGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGata                           >  2:1551690/1‑150 (MQ=255)
                                                                                                                           tGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGatat                          <  1:2086200/150‑1 (MQ=255)
                                                                                                                               aCCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCCAAACGTGCAGAGCATTGAAACCCGTTCGCTACAGTTAGGCTTACTGGGAGATATGCAg                      >  2:1517189/1‑150 (MQ=255)
                                                                                                                                ccAGCGCTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAgc                     <  2:1167046/150‑1 (MQ=255)
                                                                                                                                  aGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCAGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCCgcgc                   >  1:3177823/1‑150 (MQ=255)
                                                                                                                                   gcgcTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGcc                  <  1:3112768/150‑1 (MQ=255)
                                                                                                                                     gcTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTg                <  1:2739153/150‑1 (MQ=255)
                                                                                                                                     gcTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTg                <  1:2523043/150‑1 (MQ=255)
                                                                                                                                     gcTCGTCGTTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTg                <  1:172839/150‑1 (MQ=255)
                                                                                                                                      cTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGa               <  2:3786791/150‑1 (MQ=255)
                                                                                                                                         gtcgtTTGCGTAGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACt            >  2:3358925/1‑150 (MQ=255)
                                                                                                                                            gtTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGc         >  2:3427639/1‑150 (MQ=255)
                                                                                                                                              ttGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTg       >  2:2933998/1‑150 (MQ=255)
                                                                                                                                                   tCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTg  <  2:3560680/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TGCTGACAAATCACTGGCAGCACGGCGGGCATTTTCGCTTGATGGGTTGAAGGAACTGGATGCGCTCTATGAGCAATTGCTCAGTAATTTAAAGCTGGCAATGTCGGTGTTCTTCTCTGGCGATGTCACCAGCGCTCGTCGTTTGCGTCGCAGCAAACATCGTTTTCGCATTCTTAATCGCCGCTATTCCCACGCCCACGTCGATCGCCTGCATCAGCAAAACGTGCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTG  >  CP009273/4218933‑4219229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A