Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F534 I1 R1
|
1235 |
230.2 |
7611948 |
95.1% |
7238962 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
314,566 |
C→A |
D383Y (GAT→TAT) |
rclA ← |
reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 314,566 | 0 | C | A | 100.0%
| 633.5
/ NA
| 191 | D383Y (GAT→TAT) | rclA | reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (104/87); total (104/87) |
Only 100 of 192 total aligned reads displayed.
CGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATCAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTG > CP009273/314422‑314709
|
cGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATaaacaa > 1:3551364/1‑150 (MQ=255)
cTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATc > 1:2279342/1‑150 (MQ=255)
tCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCg > 2:2837203/1‑150 (MQ=255)
tCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCg < 2:1715340/150‑1 (MQ=255)
tCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCg > 2:3223503/1‑150 (MQ=255)
aTCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCt > 1:798525/1‑150 (MQ=255)
cGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTCTTATAAACAATCGCttt > 1:3588897/1‑150 (MQ=255)
gACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCtttt > 2:3733184/1‑150 (MQ=255)
gACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCtttt > 1:3483489/1‑150 (MQ=255)
ggATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAAt > 1:717185/1‑150 (MQ=255)
gATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATa < 2:3117572/150‑1 (MQ=255)
tGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATAcc > 1:734884/1‑150 (MQ=255)
gAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATAccc > 1:2204813/1‑150 (MQ=255)
aGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATAcccc > 2:1898224/1‑150 (MQ=255)
gTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCa > 1:1264929/1‑150 (MQ=255)
tAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCAc < 2:3078498/150‑1 (MQ=255)
aaaTATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACg > 1:496394/1‑150 (MQ=255)
atatCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAg < 2:3681804/150‑1 (MQ=255)
cTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTAtc > 1:685146/1‑150 (MQ=255)
gATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTAtcat > 2:1625201/1‑150 (MQ=255)
cgTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATtcatc < 2:758313/150‑1 (MQ=255)
tAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCAc < 1:189223/150‑1 (MQ=255)
tAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCAc > 1:3003710/1‑150 (MQ=255)
aaTATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCAct < 2:1086554/150‑1 (MQ=255)
atatGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCActc < 2:1381155/150‑1 (MQ=255)
tatGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCActct < 2:2957431/150‑1 (MQ=255)
atGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTg < 1:1911994/150‑1 (MQ=255)
tgatataAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTgg < 2:776296/147‑1 (MQ=255)
tGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTgg > 1:939094/1‑150 (MQ=255)
tGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTgg > 1:3330574/1‑150 (MQ=255)
tataAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCAc > 1:2261701/1‑150 (MQ=255)
ataAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCAcg > 1:2239595/1‑150 (MQ=255)
taAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCAcgc > 2:1903697/1‑150 (MQ=255)
cAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAAt > 1:1708281/1‑150 (MQ=255)
cAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAAt > 1:3072560/1‑150 (MQ=255)
gCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAAttt < 2:2353576/150‑2 (MQ=255)
cccGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGc > 2:2293331/1‑150 (MQ=255)
cccGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGc > 2:386048/1‑150 (MQ=255)
cccGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGc > 1:3783453/1‑150 (MQ=255)
ccGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCa < 2:569132/150‑1 (MQ=255)
atccatcACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGTATTGCAGCTAc < 1:2837203/150‑1 (MQ=255)
atccatcACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTAc > 2:2971496/1‑150 (MQ=255)
atccatcACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTAc > 2:1052025/1‑150 (MQ=255)
atcACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGc < 1:1898224/150‑1 (MQ=255)
atcACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGc < 1:2663486/150‑1 (MQ=255)
aCCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAAt > 1:423988/1‑150 (MQ=255)
ccATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATg < 2:42609/150‑1 (MQ=255)
cATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGt < 1:2549208/150‑1 (MQ=255)
aTTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTc > 1:1214017/1‑150 (MQ=255)
cACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTg > 1:1030498/1‑128 (MQ=255)
cACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTg < 2:1030498/128‑1 (MQ=255)
tataTTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTg > 1:2995842/1‑150 (MQ=255)
atTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAat > 1:337090/1‑150 (MQ=255)
tGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAatat < 2:3483489/150‑1 (MQ=255)
atcatcTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCa > 2:2522159/1‑150 (MQ=255)
tcatcTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAg > 1:3251055/1‑150 (MQ=255)
tcatcTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAg < 2:3162579/150‑1 (MQ=255)
catcTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGc > 2:693410/1‑150 (MQ=255)
catcTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGc > 2:735954/1‑150 (MQ=255)
catcTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGc < 2:181946/150‑1 (MQ=255)
catcTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGc < 1:2008190/150‑1 (MQ=255)
tcGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGcacca < 2:1638354/150‑1 (MQ=255)
gggAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCActct > 1:2107859/1‑150 (MQ=255)
gAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCActctct < 1:1000925/150‑1 (MQ=255)
aGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCActctctc > 1:246920/1‑150 (MQ=255)
gTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCActctctct < 2:70851/150‑1 (MQ=255)
tCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTg < 2:2279152/150‑1 (MQ=255)
aaCACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGc > 1:2912016/1‑150 (MQ=255)
aaCACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGc > 1:1643678/1‑150 (MQ=255)
acacacAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCt < 2:2239615/150‑1 (MQ=255)
acacacAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCt < 2:2239558/150‑1 (MQ=255)
acacaGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTg > 2:3244797/1‑150 (MQ=255)
acacaGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTg < 2:2977180/150‑1 (MQ=255)
cacaGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGt < 1:878457/150‑1 (MQ=255)
cacaGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGt < 2:63863/150‑1 (MQ=255)
cacaGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGt < 1:3157812/150‑1 (MQ=255)
acaGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGtt > 1:1063647/1‑150 (MQ=255)
gcagTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGttctt < 2:318119/150‑1 (MQ=255)
tGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGt > 2:2739757/1‑150 (MQ=255)
gCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATa < 2:2908501/150‑1 (MQ=255)
gCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATa < 1:1551541/150‑1 (MQ=255)
ccTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCa < 2:1214017/150‑1 (MQ=255)
tAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAAc > 1:1941901/1‑150 (MQ=255)
tAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAAc < 1:1221713/150‑1 (MQ=255)
aaCATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAAcc > 2:2839265/1‑150 (MQ=255)
aCATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAAccc < 1:416972/150‑1 (MQ=255)
cNTACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCt > 1:3089531/1‑150 (MQ=255)
cATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCt < 2:3785141/150‑1 (MQ=255)
tACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTgg < 1:1164614/150‑1 (MQ=255)
tACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTgg < 2:96815/150‑1 (MQ=255)
gTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACa > 2:1846482/1‑150 (MQ=255)
gTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACa > 1:2962349/1‑150 (MQ=255)
ttttATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCg > 2:1665472/1‑150 (MQ=255)
ttattaTAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGgt < 1:2971496/150‑1 (MQ=255)
ttattaTAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGgt > 2:830667/1‑150 (MQ=255)
ttattaTAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGgt > 2:832067/1‑150 (MQ=255)
tattatAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGgtg > 1:2951659/1‑150 (MQ=255)
tattatAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGgtg > 2:3397121/1‑150 (MQ=255)
tattatAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGgtg > 2:1500298/1‑150 (MQ=255)
tattatAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGgtg > 1:2951794/1‑150 (MQ=255)
|
CGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATCAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTG > CP009273/314422‑314709
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATCAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAA > CP009273/314418‑314715
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GATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAA > SRR19973061.64103/1‑150 (MQ=60)
CGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAA > SRR19973061.3560455/1‑150 (MQ=60)
CTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATC > SRR19973061.2285096/1‑150 (MQ=60)
CTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATC > SRR19973061.2284904/1‑150 (MQ=60)
ATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCT > SRR19973061.318948/1‑150 (MQ=60)
ATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCT > SRR19973061.800617/1‑150 (MQ=60)
CGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTCTTATAAACAATCGCTTT > SRR19973061.3598096/1‑150 (MQ=60)
CGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTT < SRR19973061.2074204/150‑1 (MQ=60)
GACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTT > SRR19973061.3492398/1‑150 (MQ=60)
GGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAAT > SRR19973061.718684/1‑150 (MQ=60)
GGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAAT > SRR19973061.719053/1‑150 (MQ=60)
TGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACC > SRR19973061.736811/1‑150 (MQ=60)
GAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCC > SRR19973061.2210353/1‑150 (MQ=60)
GTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCA > SRR19973061.1267537/1‑150 (MQ=60)
GTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCA > SRR19973061.1268054/1‑150 (MQ=60)
TAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCAC < SRR19973061.536136/150‑1 (MQ=60)
AAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACG > SRR19973061.497705/1‑150 (MQ=60)
CTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATC > SRR19973061.686919/1‑150 (MQ=60)
ATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATT < SRR19973061.3354780/150‑1 (MQ=60)
GCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCAT < SRR19973061.3571533/150‑1 (MQ=60)
GTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCGACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCA > SRR19973061.2989966/1‑150 (MQ=60)
TAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCAC < SRR19973061.189812/150‑1 (MQ=60)
TAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCAC < SRR19973061.189797/150‑1 (MQ=60)
TAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCAC > SRR19973061.3011460/1‑150 (MQ=60)
TAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCAC > SRR19973061.3011515/1‑150 (MQ=60)
TAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTGTAATACCCCACGAGTATCATTCATCAC > SRR19973061.3010894/1‑150 (MQ=60)
AATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACT > SRR19973061.911046/1‑150 (MQ=60)
ATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTG < SRR19973061.1916722/150‑1 (MQ=60)
TGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGG > SRR19973061.941482/1‑150 (MQ=60)
TGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGG > SRR19973061.3339154/1‑150 (MQ=60)
TATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCAC > SRR19973061.2267401/1‑150 (MQ=60)
ATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACG > SRR19973061.1644579/1‑150 (MQ=60)
ATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACG > SRR19973061.2245221/1‑150 (MQ=60)
ATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACG > SRR19973061.2245241/1‑150 (MQ=60)
ATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGACAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGTCACG > SRR19973061.2245184/1‑150 (MQ=60)
CAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGACT > SRR19973061.3080492/1‑150 (MQ=60)
CAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAAT > SRR19973061.1712572/1‑150 (MQ=60)
CAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAAT > SRR19973061.3080499/1‑150 (MQ=60)
GCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTG < SRR19973061.2517941/150‑1 (MQ=60)
CCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGC > SRR19973061.3794792/1‑150 (MQ=60)
CCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGC > SRR19973061.3793101/1‑150 (MQ=60)
CCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCA > SRR19973061.1125182/1‑150 (MQ=60)
ATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGTATTGCAGCTAC < SRR19973061.2844469/150‑1 (MQ=60)
ATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGC < SRR19973061.2670331/150‑1 (MQ=60)
ATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGC < SRR19973061.1902933/150‑1 (MQ=60)
ACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAAT > SRR19973061.425138/1‑150 (MQ=60)
CATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGT < SRR19973061.2555697/150‑1 (MQ=60)
ATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTC > SRR19973061.1217056/1‑150 (MQ=60)
CACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGagatcggaagagcacacgtctg > SRR19973061.1033137/1‑128 (MQ=60)
TATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTG < SRR19973061.167601/150‑1 (MQ=60)
TATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTG > SRR19973061.3003572/1‑150 (MQ=60)
ATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAAT > SRR19973061.337977/1‑150 (MQ=60)
TCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAG > SRR19973061.3259418/1‑150 (MQ=60)
CATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGC > SRR19973061.3649866/1‑150 (MQ=60)
CATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGC < SRR19973061.2013199/150‑1 (MQ=60)
CATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGC < SRR19973061.2013229/150‑1 (MQ=60)
ATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCA < SRR19973061.3309269/150‑1 (MQ=60)
GGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCT > SRR19973061.2113152/1‑150 (MQ=60)
GGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTC > SRR19973061.1549055/1‑150 (MQ=60)
GGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTC > SRR19973061.3469347/1‑150 (MQ=60)
GAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCT < SRR19973061.1003475/150‑1 (MQ=60)
GAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCT < SRR19973061.720354/150‑1 (MQ=60)
GAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCT < SRR19973061.1908414/150‑1 (MQ=60)
AGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTC > SRR19973061.247619/1‑150 (MQ=60)
AGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTC > SRR19973061.2611564/1‑150 (MQ=60)
AGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTC > SRR19973061.2933813/1‑150 (MQ=60)
AGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTC > SRR19973061.432306/1‑150 (MQ=60)
GTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCT < SRR19973061.2960505/150‑1 (MQ=60)
AACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGC > SRR19973061.2919488/1‑150 (MQ=60)
AACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGC > SRR19973061.1647807/1‑150 (MQ=60)
CACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTT > SRR19973061.2677063/1‑150 (MQ=60)
ACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTG > SRR19973061.3165312/1‑150 (MQ=60)
CACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGT < SRR19973061.3165927/150‑1 (MQ=60)
CACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGT < SRR19973061.880735/150‑1 (MQ=60)
CACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGT > SRR19973061.846292/1‑150 (MQ=60)
ACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTT > SRR19973061.1066268/1‑150 (MQ=60)
ACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTT > SRR19973061.1066379/1‑150 (MQ=60)
AGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCT > SRR19973061.41969/1‑150 (MQ=60)
AGTGATGCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCT > SRR19973061.1198007/1‑150 (MQ=60)
GCCCCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATA < SRR19973061.1555398/150‑1 (MQ=60)
CCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCA > SRR19973061.229196/1‑150 (MQ=60)
CCTAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCA < SRR19973061.2204144/150‑1 (MQ=60)
TAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAAC > SRR19973061.1946736/1‑150 (MQ=60)
TAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAAC < SRR19973061.1224081/150‑1 (MQ=60)
TAACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAAC < SRR19973061.1224760/150‑1 (MQ=60)
ACATACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCC < SRR19973061.418106/150‑1 (MQ=60)
CNTACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCT > SRR19973061.3097497/1‑150 (MQ=60)
TACGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGG < SRR19973061.1167562/150‑1 (MQ=60)
CGTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGAC < SRR19973061.1727002/150‑1 (MQ=60)
GTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACA > SRR19973061.2883942/1‑150 (MQ=60)
GTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACA > SRR19973061.2969995/1‑150 (MQ=60)
GTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACA < SRR19973061.737885/150‑1 (MQ=60)
GTTGGGTTTTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACA > SRR19973061.2970744/1‑150 (MQ=60)
TTATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGT < SRR19973061.2979157/150‑1 (MQ=60)
TATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTG > SRR19973061.2959405/1‑150 (MQ=60)
TATTATAAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTG > SRR19973061.2959270/1‑150 (MQ=60)
AAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAA > SRR19973061.424300/1‑150 (MQ=60)
AAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAA < SRR19973061.3742737/150‑1 (MQ=60)
AAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAA > SRR19973061.2335076/1‑150 (MQ=60)
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GATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGATCATCTCGTGGGAGTCAACACACAGCAGTGATGCCCCTAACATACGTTGGGTTTTATTATCAACAATCGCTTTTAATACCCCACGAGTATCATTCATCACTCTGGCACGCGGAATTGCAGCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAA > CP009273/314418‑314715
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |