Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F98 I0 R1 799 294.1 9752082 92.2% 8991419 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,589,490 C→T 20.6% pseudogene (2755/5323 nt) yneO ← pseudogene, AidA homolog

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,589,4900CT20.6% 600.0 / 144.5 255pseudogene (2755/5323 nt)yneOpseudogene, AidA homolog
Reads supporting (aligned to +/- strand):  ref base C (85/117);  new base T (28/24);  total (113/142)
Fisher's exact test for biased strand distribution p-value = 1.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 256 total aligned reads displayed.

AACGTCAGCTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGCCATGGGAT  >  CP009273/1589342‑1589636
                                                                                                                                                    |                                                                                                                                                  
aaCGTCAGCTTTTGCCCACCATGGATGTTCGGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCt                                                                                                                                                   <  2:1302797/150‑1 (MQ=255)
  cGTCAGCTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTc                                                                                                                                                 <  1:3455657/150‑1 (MQ=255)
   gTCAGCTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTcc                                                                                                                                                <  1:2075466/150‑1 (MQ=255)
   gTCAGCTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTcc                                                                                                                                                >  2:4615007/1‑150 (MQ=255)
      aGCTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCAcc                                                                                                                                             >  1:739664/1‑150 (MQ=255)
       gCTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCt                                                                                                                                            <  2:2009001/150‑1 (MQ=255)
       gCTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCt                                                                                                                                            >  1:523187/1‑150 (MQ=255)
       gCTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCt                                                                                                                                            <  2:2219725/150‑1 (MQ=255)
        cTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACATGGTGCGGTCGTGAGGCGGAATCCATAATCACCATCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAAAGTTTTTTCCGTTTCAACCtc                                                                                                                                           >  1:4786303/1‑150 (MQ=255)
           ttGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCtcgtc                                                                                                                                        >  2:2473905/1‑150 (MQ=255)
           ttGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCtcgtc                                                                                                                                        <  1:2864428/150‑1 (MQ=255)
            tGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCtcgtcg                                                                                                                                       >  1:2500549/1‑150 (MQ=255)
              cccACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGcc                                                                                                                                     >  2:107958/1‑150 (MQ=255)
               ccaccaTGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTGTCCACCTCGTCGccc                                                                                                                                    >  2:4108490/1‑150 (MQ=255)
                caccaTGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCt                                                                                                                                   <  1:2175453/150‑1 (MQ=255)
                   caTTGATGTTCATCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTa                                                                                                                                <  1:4547173/150‑1 (MQ=255)
                   caTGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTa                                                                                                                                >  1:2941768/1‑150 (MQ=255)
                    aTGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTaa                                                                                                                               <  1:4869431/150‑1 (MQ=255)
                      ggATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAAt                                                                                                                             <  1:1815338/150‑1 (MQ=255)
                       gATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATc                                                                                                                            <  2:1155601/150‑1 (MQ=255)
                        aTGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCa                                                                                                                           >  1:2285495/1‑150 (MQ=255)
                        aTGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCa                                                                                                                           <  1:3081054/150‑1 (MQ=255)
                        aTGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCa                                                                                                                           <  2:4155409/150‑1 (MQ=255)
                           ttCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGt                                                                                                                        <  2:1595342/150‑1 (MQ=255)
                           ttCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGt                                                                                                                        >  1:1930584/1‑150 (MQ=255)
                              aGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAAc                                                                                                                     <  2:704926/150‑1 (MQ=255)
                              aGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAAc                                                                                                                     <  2:3483080/150‑1 (MQ=255)
                               gcgcTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACg                                                                                                                    <  1:1491548/150‑1 (MQ=255)
                               gcgcTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACg                                                                                                                    <  2:3915592/150‑1 (MQ=255)
                                 gcTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGtt                                                                                                                  <  1:2544693/150‑1 (MQ=255)
                                  cTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTa                                                                                                                 >  1:1032998/1‑150 (MQ=255)
                                   tttCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTaa                                                                                                                >  1:2642165/1‑150 (MQ=255)
                                   tttCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTaa                                                                                                                >  2:2945070/1‑150 (MQ=255)
                                      cAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGa                                                                                                             >  1:31336/1‑150 (MQ=255)
                                       aGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAg                                                                                                            <  2:1815221/150‑1 (MQ=255)
                                       aGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAg                                                                                                            <  2:1044030/150‑1 (MQ=255)
                                       aGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAg                                                                                                            <  2:3495151/150‑1 (MQ=255)
                                         cccATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGcc                                                                                                          <  2:2412090/150‑1 (MQ=255)
                                          ccATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCACGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCAGTAAATCACGTAACGTTAAAGAGCCa                                                                                                         >  1:46745/1‑150 (MQ=255)
                                               gTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGa                                                                                                    >  2:2583653/1‑150 (MQ=255)
                                                 tAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGAcc                                                                                                  >  2:3202403/1‑150 (MQ=255)
                                                 tAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGAcc                                                                                                  >  2:3352988/1‑150 (MQ=255)
                                                    cGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCaa                                                                                               <  2:3815980/150‑1 (MQ=255)
                                                    cGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCaa                                                                                               <  2:1577210/150‑1 (MQ=255)
                                                      tACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATa                                                                                             <  1:868497/150‑1 (MQ=255)
                                                       aCAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAAAGTTAATGAGCCACCCGACCCAATaa                                                                                            >  1:3020984/1‑150 (MQ=255)
                                                        cAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAAc                                                                                           >  2:4673331/1‑150 (MQ=255)
                                                        cAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAAc                                                                                           >  2:541098/1‑150 (MQ=255)
                                                              aTTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTg                                                                                     >  1:3338215/1‑150 (MQ=255)
                                                                tACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTgcg                                                                                   >  1:3214590/1‑150 (MQ=255)
                                                                tACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTgcg                                                                                   >  2:4071505/1‑150 (MQ=255)
                                                                tACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTgcg                                                                                   >  2:3280910/1‑150 (MQ=255)
                                                                  ccTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGcc                                                                                 <  2:2153214/150‑1 (MQ=255)
                                                                     ggTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTc                                                                              <  1:1343701/150‑1 (MQ=255)
                                                                         cGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCa                                                                          <  2:2314641/150‑1 (MQ=255)
                                                                           gTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGt                                                                        >  1:2424296/1‑150 (MQ=255)
                                                                             cGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTg                                                                      <  2:134592/150‑1 (MQ=255)
                                                                               tGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGaa                                                                    <  2:4384875/150‑1 (MQ=255)
                                                                                     ggAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGa                                                              <  1:288816/150‑1 (MQ=255)
                                                                                      gAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGAc                                                             <  1:4047857/150‑1 (MQ=255)
                                                                                      gAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGAc                                                             <  2:514351/150‑1 (MQ=255)
                                                                                       aaTCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACa                                                            >  1:2600518/1‑150 (MQ=255)
                                                                                            aTAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCt                                                       <  2:4743847/150‑1 (MQ=255)
                                                                                             tAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTa                                                      <  2:4539151/150‑1 (MQ=255)
                                                                                              aaTCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTAt                                                     >  1:3647737/1‑150 (MQ=255)
                                                                                                      tCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCgtgt                                             <  1:3352988/150‑1 (MQ=255)
                                                                                                         gCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTcc                                          <  1:1985128/150‑1 (MQ=255)
                                                                                                         gCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTcc                                          <  1:3725834/150‑1 (MQ=255)
                                                                                                          cGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCa                                         <  1:4170116/150‑1 (MQ=255)
                                                                                                          cGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCa                                         <  1:330972/150‑1 (MQ=255)
                                                                                                            accaccGTTCCGTTGTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGc                                       <  2:4143214/150‑1 (MQ=255)
                                                                                                             ccaccGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCa                                      >  2:1201556/1‑150 (MQ=255)
                                                                                                                 cgttccgttTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAAtt                                  <  1:1556951/150‑1 (MQ=255)
                                                                                                                  gttccgttTTGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTg                                 >  2:4027243/1‑150 (MQ=255)
                                                                                                                  gttccgttTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTg                                 <  1:541662/150‑1 (MQ=255)
                                                                                                                    tccgttTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAg                               <  1:4736878/150‑1 (MQ=255)
                                                                                                                        ttttGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGcgtc                           <  2:1521105/150‑1 (MQ=255)
                                                                                                                           tGCGCAATGTGTAACGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCgtcgtc                        <  2:739664/150‑1 (MQ=255)
                                                                                                                              gcAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAGCGCCGACCTGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCaga                     >  2:3654848/1‑150 (MQ=255)
                                                                                                                               cAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCagag                    <  1:1638156/150‑1 (MQ=255)
                                                                                                                               cAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCagag                    <  1:3800121/150‑1 (MQ=255)
                                                                                                                                aaTGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAgg                   >  1:2389601/1‑150 (MQ=255)
                                                                                                                                 aTGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAggg                  >  1:1397764/1‑150 (MQ=255)
                                                                                                                                 aTGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAggg                  >  1:1392250/1‑150 (MQ=255)
                                                                                                                                   gtgtAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGtt                <  2:2642165/150‑1 (MQ=255)
                                                                                                                                    tgtAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTa               <  2:1791183/150‑1 (MQ=255)
                                                                                                                                     gtAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTAt              >  1:3857632/1‑150 (MQ=255)
                                                                                                                                      tAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTAtt             <  1:1184939/150‑1 (MQ=255)
                                                                                                                                       aaCGTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTc            <  1:4393271/150‑1 (MQ=255)
                                                                                                                                       aaCGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTc            >  1:1616292/1‑150 (MQ=255)
                                                                                                                                        aCGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCg           <  1:1691356/150‑1 (MQ=255)
                                                                                                                                          gTTTTGTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGcc         >  1:4800567/1‑150 (MQ=255)
                                                                                                                                          gTTTTGTCAGTTTCCACCTCGTCGCACTGTAAATCACGTAACGTTAATGAGCCACCCGACACAATAACCGTTTGCGCCTTCACCAGTTGAACTCAGACATGGCTATCGTCGTGTTCAAGCAAATTGAGCGTCGTCAGAGGGTTATTCGcc         <  2:4786303/150‑1 (MQ=255)
                                                                                                                                            tttGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGCCAt       <  2:4281943/150‑1 (MQ=255)
                                                                                                                                             ttGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGCCATg      <  2:2631982/150‑1 (MQ=255)
                                                                                                                                               gTCCGTTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGCCATggg    <  1:3012651/150‑1 (MQ=255)
                                                                                                                                               gTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGCCATggg    <  1:4504441/150‑1 (MQ=255)
                                                                                                                                                 ccGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGCCATGGGAt  >  2:3653695/1‑150 (MQ=255)
                                                                                                                                                 ccGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGCCATGGGAt  <  2:893176/150‑1 (MQ=255)
                                                                                                                                                 ccGCGTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGCCATGGGAt  <  2:2890074/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
AACGTCAGCTTTTGCCCACCATGGATGTTCAGCGCTTTCAGCCCATAGTTAACGTACAAACCATTACCTGGTGCGGTCGTGAGGCGGAATCCATAATCACCCTCGGCGACCACCGTTCCGTTTTGCGCAATGTGTAACGTTTTGTCCGCTTCCACCTCGTCGCCCTGTAAATCACGTAACGTTAATGAGCCACCCGACCCAATAACCGTTTGCGCCTTCACCAGTTGAACGCCGACATGGCTATCGTCGTGTTCCAGCAAATTGAGCGTCGTCAGAGGGTTATTCGCCATGGGAT  >  CP009273/1589342‑1589636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A