Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F83 I1 R1
|
393 |
530.9 |
9427126 |
91.1% |
8588111 |
148.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP043523 |
1,848,357 |
A→T |
E22D (GAA→GAT) |
FTN78_chr1898 → |
Cold shock protein of CSP family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP043523 | 1,848,357 | 0 | A | T | 99.2%
| 205.5
/ ‑3.9
| 124 | E22D (GAA→GAT) | FTN78_chr1898 | Cold shock protein of CSP family |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base T (71/52); total (72/52) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.11e-01 |
Only 100 of 127 total aligned reads displayed.
ATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATA‑A‑‑ATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAACACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATAATTG > CP043523/1848211‑1848495
|
aTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑A‑‑ATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGaagaag < 2:1321597/148‑1 (MQ=17)
ttGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATgg < 2:3107474/148‑1 (MQ=11)
ttGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATgg < 2:3108130/148‑1 (MQ=11)
ttGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATgg < 2:3108603/148‑1 (MQ=11)
tGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggt < 2:4335786/148‑2 (MQ=11)
gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGAATTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtc > 1:1652842/1‑146 (MQ=11)
cATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtcaa > 2:3532205/1‑144 (MQ=11)
aTGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtcaag > 2:2432982/1‑143 (MQ=11)
tGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtcaaga > 2:4323242/1‑142 (MQ=11)
gAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtcaagat > 2:3729396/1‑141 (MQ=11)
gAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGAt > 1:2415677/1‑148 (MQ=11)
aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGt > 1:1775250/1‑148 (MQ=11)
aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGt > 1:3510149/1‑148 (MQ=11)
aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGt < 2:1286371/148‑1 (MQ=11)
aaaaTGTGATATAGATTCACTTTTCGCAAAATAAGATTTACTATTTTGTCGAAAGGAGATACAT‑ATA‑‑TTATGGCACATGGACCCGTAAAATGGTTTAACGCTACTAAAGGATTTGGTGTTATTACCTCTGAAGATGGTCAAGATTTGt < 2:1936423/148‑1 (MQ=2)
aaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc > 1:3255539/1‑148 (MQ=11)
aaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc > 1:50559/1‑148 (MQ=11)
aaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc > 1:1324110/1‑148 (MQ=11)
aTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCg < 1:1600907/148‑1 (MQ=11)
aTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCg > 1:404189/1‑148 (MQ=11)
tGTTTTATAGATTCTCTTTTCGCAGAATAAGATTTACAATTTTGTCGAAAGGAAATAGAT‑ATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGc < 2:4310195/148‑1 (MQ=11)
tGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGc > 2:3737240/1‑148 (MQ=11)
tGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGc > 2:3199024/1‑148 (MQ=11)
gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCt > 2:3424884/1‑148 (MQ=11)
gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCt > 2:251760/1‑148 (MQ=11)
gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCt > 2:4580368/1‑148 (MQ=11)
gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCt < 2:4372108/148‑1 (MQ=11)
ttttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGGAAAATGGTTTAACGCTACTAAAGGATTTGGCTTTATTACCTCTGAAGATGGTCAAGAGTTGTTCGCTc > 1:833118/1‑148 (MQ=11)
ttttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑A‑‑ATATCTTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTc > 2:1925682/1‑148 (MQ=11)
ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCAc > 2:2543720/1‑148 (MQ=11)
ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCAc > 1:3169294/1‑148 (MQ=11)
ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCAc > 2:734444/1‑148 (MQ=11)
ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCAc > 1:276299/1‑148 (MQ=11)
tataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACt > 1:1296766/1‑148 (MQ=11)
tataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACt > 2:693467/1‑148 (MQ=11)
ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt > 2:2833499/1‑148 (MQ=11)
ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt > 1:2407566/1‑148 (MQ=11)
aGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct > 2:4331024/1‑148 (MQ=11)
aGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATA‑AATATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct > 2:4330350/1‑148 (MQ=11)
acgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCa > 1:1088158/8‑148 (MQ=11)
acgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCa > 2:4148062/8‑148 (MQ=11)
acgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCa < 1:4323242/141‑1 (MQ=11)
cgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCaa > 2:2465659/7‑148 (MQ=11)
cgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCaa < 2:2535275/142‑1 (MQ=11)
cgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCaa > 2:2878388/7‑148 (MQ=11)
cgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCaa < 1:3532205/142‑1 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAg > 2:2072323/6‑148 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAg > 2:2073267/6‑148 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAg < 1:1136355/143‑1 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAg < 2:3229883/143‑1 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTAAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAg < 1:741771/143‑1 (MQ=11)
ctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGc < 1:3388363/144‑1 (MQ=11)
ctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGc < 1:2792447/144‑1 (MQ=11)
ctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGc > 1:1705219/5‑148 (MQ=11)
tactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa > 2:3907711/4‑148 (MQ=11)
tactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa < 1:463505/145‑1 (MQ=11)
tactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa > 1:2439806/4‑148 (MQ=11)
tactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa > 1:2105780/4‑148 (MQ=11)
tacgaaaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa < 2:4120615/144‑1 (MQ=11)
actAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg > 1:3344408/3‑148 (MQ=11)
actAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg > 2:1512838/3‑148 (MQ=11)
actAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg < 1:1416730/146‑1 (MQ=11)
actAAAGGACTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg < 1:3249596/146‑1 (MQ=11)
ctAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGt < 2:2470363/147‑1 (MQ=11)
ctAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTGGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGt > 2:3520930/2‑148 (MQ=11)
tAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGtt > 1:4684653/1‑148 (MQ=11)
tAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGtt > 1:2879342/1‑148 (MQ=11)
tAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGtt > 1:2879609/1‑148 (MQ=11)
tAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGtt > 1:2879696/1‑148 (MQ=11)
aaaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa < 2:4639703/148‑1 (MQ=11)
aaaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa < 1:664035/148‑1 (MQ=11)
aaaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa > 2:3836472/1‑148 (MQ=11)
aaaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa > 2:3835312/1‑148 (MQ=11)
aaaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa < 1:4099473/148‑1 (MQ=11)
aaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTaa > 1:666752/1‑148 (MQ=11)
aaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTaa > 1:4388048/1‑148 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat < 1:308935/148‑1 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat > 2:799516/1‑148 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat > 1:1363225/1‑148 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat < 1:4593783/148‑1 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat > 2:2514677/1‑148 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat < 2:3071380/148‑1 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat > 1:2892874/1‑148 (MQ=11)
ggATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAata < 1:4190761/148‑1 (MQ=11)
ggATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAata < 1:2786747/148‑1 (MQ=11)
ggATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAata > 1:2565386/1‑148 (MQ=11)
ggATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAata < 1:4600159/148‑1 (MQ=11)
gATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAatat > 1:3582819/1‑148 (MQ=11)
gATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAatat < 1:4502506/148‑1 (MQ=11)
aTTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATc < 2:2487487/148‑1 (MQ=11)
tttGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATca < 1:3504126/148‑1 (MQ=11)
tttGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATca > 2:3259743/1‑148 (MQ=11)
tttGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATca > 2:1499987/1‑148 (MQ=11)
tttGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATca < 1:1780777/148‑1 (MQ=11)
tggttttATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATcaca < 2:2493628/144‑1 (MQ=11)
ggttttATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACaa < 2:2202316/145‑1 (MQ=11)
gttttATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACaaa > 1:1520755/3‑148 (MQ=11)
gttttATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACaaa < 1:3790181/146‑1 (MQ=11)
cctctgaagatGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATAAtt < 2:2210587/143‑1 (MQ=11)
ctctgaagatGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATAATTg > 2:3402718/5‑148 (MQ=11)
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ATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATA‑A‑‑ATA‑‑TTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAACACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATAATTG > CP043523/1848211‑1848495
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
