Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F83 I1 R1
|
393 |
530.9 |
9427126 |
91.1% |
8588111 |
148.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP043523 |
1,884,837 |
T→C |
F173F (TTT→TTC) |
FTN78_chr1930 → |
Putative UV‑damage repair protein UvrX |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP043523 | 1,884,837 | 0 | T | C | 100.0%
| 883.3
/ NA
| 243 | F173F (TTT→TTC) | FTN78_chr1930 | Putative UV‑damage repair protein UvrX |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (127/116); total (127/116) |
Only 100 of 268 total aligned reads displayed.
TGTTCCTCCACAAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTTTCTTGACGTAACAGAATCACTCAATTTCTTTTATCCTGAGATTAAAAATCGTTATGAACAAATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTCGGACTATATGTGACTGTGGGCATGGGAGACAATCCCTTGCTTGCCAAACTTGCAATGGATAACT > CP043523/1884696‑1884979
|
gTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTg < 1:2266316/148‑1 (MQ=255)
ctcctcAAATTCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGAt < 1:3744888/148‑1 (MQ=255)
ctcaAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaa < 1:3618511/146‑1 (MQ=255)
tcaAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaaa > 1:864795/2‑148 (MQ=255)
tcaAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaaa > 1:865585/2‑148 (MQ=255)
caAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaaaa > 2:4637301/1‑148 (MQ=255)
caAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaaaa > 1:2116565/1‑148 (MQ=255)
aTGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATc < 1:2910449/148‑1 (MQ=255)
tGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCg < 2:2482271/148‑1 (MQ=255)
cAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCgat > 2:1681762/1‑146 (MQ=255)
aGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCgata > 1:4429197/1‑145 (MQ=255)
gCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGatat > 2:3339149/1‑148 (MQ=255)
gCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGatat > 1:2139751/1‑148 (MQ=255)
tctATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGa > 1:2984429/1‑148 (MQ=255)
tgacagATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGa < 1:4574188/143‑1 (MQ=255)
acagATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACt > 1:3663003/4‑148 (MQ=255)
acagATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTAAAAAAAAAATAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACt < 2:846845/145‑1 (MQ=255)
agATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTg < 2:2825880/147‑1 (MQ=255)
agATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTg > 2:3034639/2‑148 (MQ=255)
agATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTg < 1:2774896/147‑1 (MQ=255)
gATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGc < 2:3841596/148‑1 (MQ=255)
tatactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCaa < 2:2922430/141‑1 (MQ=255)
tatactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCaa < 1:105424/141‑1 (MQ=255)
atactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAc < 1:1013990/142‑1 (MQ=255)
atactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAc > 2:644513/7‑148 (MQ=255)
atactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAc > 1:1483175/7‑148 (MQ=255)
tactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACg > 1:3831247/6‑148 (MQ=255)
tactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACg > 2:2251413/6‑148 (MQ=255)
tactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACg > 1:22179/6‑148 (MQ=255)
actgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGt < 2:3379394/144‑1 (MQ=255)
actgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGt > 1:4081489/5‑148 (MQ=255)
ctgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTg < 2:565080/145‑1 (MQ=255)
aCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTgaga > 1:1670524/1‑148 (MQ=255)
ccAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGAt < 1:4619094/148‑1 (MQ=255)
ccAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGAt < 1:2420179/148‑1 (MQ=255)
ccAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGAt < 1:4525696/148‑1 (MQ=255)
ccAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGAt < 2:3135826/148‑1 (MQ=255)
cAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGAtt < 1:1253130/148‑1 (MQ=255)
aaTTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTc > 2:1877442/1‑148 (MQ=255)
aTTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCg > 2:4105422/1‑148 (MQ=255)
ttATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCga > 2:2020675/1‑148 (MQ=255)
ttATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCga > 2:1642294/1‑148 (MQ=255)
ttATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCga > 2:2627189/1‑148 (MQ=255)
ttATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCga > 1:2157174/1‑148 (MQ=255)
tataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCgag > 1:4283896/1‑148 (MQ=255)
tataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCgag < 1:2378620/148‑1 (MQ=255)
tataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCgag > 2:2348492/1‑148 (MQ=255)
ataCGTCAATTGATGAGCTTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCgaga < 1:4490461/148‑1 (MQ=255)
ataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCgaga > 2:1121518/1‑148 (MQ=255)
ataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTGTAGACTTGCAACGTGAGATTCgaga < 1:652201/148‑1 (MQ=255)
tacgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAt > 1:676544/5‑148 (MQ=255)
cgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaa < 2:1055814/146‑1 (MQ=255)
cgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaa > 1:1635428/3‑148 (MQ=255)
cgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaa > 2:4553693/3‑148 (MQ=255)
tCAATTGATGAGATCCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAAc < 1:1187655/148‑1 (MQ=255)
cAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACt > 2:3238437/1‑148 (MQ=255)
tgatgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGa > 1:115533/1‑148 (MQ=255)
atgaGATTCACTCCTACTCGATTGATGAATCTTTTTTTTTTTTTTCATAATCATTGAACTTCTTCTACCCTAAGATTAAAAATCGATATGAATAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGTACt > 2:1434610/1‑148 (MQ=255)
atgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACt < 2:4394292/148‑1 (MQ=255)
tgagattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACta > 2:3663052/5‑148 (MQ=255)
tgagattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACta > 1:3124003/5‑148 (MQ=255)
tgagattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACta > 2:1417452/5‑148 (MQ=255)
tgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAAGCGCATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACta > 2:1360658/1‑148 (MQ=255)
gagattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACtat > 1:1693800/4‑148 (MQ=255)
gattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTatat < 2:1304110/147‑1 (MQ=255)
gattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTatat < 1:554895/147‑1 (MQ=255)
attcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATAtg > 1:1403388/1‑148 (MQ=255)
ttcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATAtgt < 1:820427/148‑1 (MQ=255)
tcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATAtgtg < 1:2607719/148‑1 (MQ=255)
cactcctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGa < 1:3296230/142‑1 (MQ=255)
actcctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGAc < 1:4382018/143‑1 (MQ=255)
tcctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtg < 1:337390/145‑1 (MQ=255)
tcctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtg < 1:1918298/145‑1 (MQ=255)
tcctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtg > 1:1466842/4‑148 (MQ=255)
tcctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtg > 1:3754541/4‑148 (MQ=255)
cctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgt < 2:1922107/146‑1 (MQ=255)
cctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgt < 2:3736191/146‑1 (MQ=255)
cctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgt > 2:3466630/3‑148 (MQ=255)
ctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgtt > 1:2456808/2‑147 (MQ=255)
cTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTtggg < 1:3876448/148‑2 (MQ=255)
cGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgttgggat < 2:4026196/148‑7 (MQ=255)
ggatatcaCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCcttgctt > 2:3173831/8‑148 (MQ=255)
ggatatcaCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCcttgctt > 2:3979811/8‑148 (MQ=255)
gatatcaCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCcttgcttg > 1:1988080/7‑148 (MQ=255)
atatcaCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCttgcttgc > 2:2191216/6‑148 (MQ=255)
tatcaCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGcc < 1:950521/144‑1 (MQ=255)
atcaCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCa > 1:3152373/4‑148 (MQ=255)
tcaCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCaa > 1:3505869/3‑148 (MQ=255)
caCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCaaa < 2:3407851/147‑1 (MQ=255)
aCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAAc > 1:2276757/1‑148 (MQ=255)
aCAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAAc > 2:1237668/1‑148 (MQ=255)
cAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACt < 2:3566736/148‑1 (MQ=255)
cAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACt > 2:1326419/1‑148 (MQ=255)
aGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACtt < 1:2762589/148‑1 (MQ=255)
tgaacttcttcTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGa < 2:1569557/143‑1 (MQ=255)
aacttcttcTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATa < 2:4250849/145‑1 (MQ=255)
aacttcttcTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATa > 1:178012/4‑148 (MQ=255)
acttcttcTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATaa > 2:179612/3‑148 (MQ=255)
cttcttcTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAAc < 1:2533466/147‑1 (MQ=255)
ttcttcTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACt < 1:3250036/148‑1 (MQ=255)
|
TGTTCCTCCACAAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTTTCTTGACGTAACAGAATCACTCAATTTCTTTTATCCTGAGATTAAAAATCGTTATGAACAAATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTCGGACTATATGTGACTGTGGGCATGGGAGACAATCCCTTGCTTGCCAAACTTGCAATGGATAACT > CP043523/1884696‑1884979
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTTTCTTGACGTAACAGAATCACTCAATTTCTTTTATCCTGAGATTAAAAATCGTTATGAACAAATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTCGGACTATATGTGACTGTGGGCATGGGAGACAATCCCTTGCTTGCCAAACTTGCAATGGATAACTATGCC > CP043523/1884707‑1884984
|
AAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATC > SRR13214404.85555/1‑150 (MQ=29)
AATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCG > SRR13214404.1978727/1‑150 (MQ=28)
CAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATAT > SRR13214404.2154098/1‑150 (MQ=23)
AGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATG < SRR13214404.3338621/150‑1 (MQ=21)
GCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGA > SRR13214404.3003527/1‑150 (MQ=20)
GCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGA < SRR13214404.148713/150‑1 (MQ=20)
CTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAA < SRR13214404.2589513/150‑1 (MQ=19)
CTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAA < SRR13214404.3854113/150‑1 (MQ=19)
TCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAAC > SRR13214404.2149108/1‑150 (MQ=18)
TCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAAC > SRR13214404.2028030/1‑150 (MQ=18)
TCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAAC > SRR13214404.2069682/1‑150 (MQ=18)
TCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAAC > SRR13214404.2070312/1‑150 (MQ=18)
TCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAAC < SRR13214404.2879299/150‑1 (MQ=18)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG < SRR13214404.395765/150‑1 (MQ=28)
gtgacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGAC < SRR13214404.339368/135‑1 (MQ=33)
tgacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACT < SRR13214404.4604951/136‑1 (MQ=34)
tgacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACT < SRR13214404.4602735/136‑1 (MQ=34)
tgacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACT > SRR13214404.4425948/15‑150 (MQ=34)
tgacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACT < SRR13214404.2580500/136‑1 (MQ=34)
tgacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACT < SRR13214404.2933799/136‑1 (MQ=34)
tgacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACT > SRR13214404.3686231/15‑150 (MQ=34)
gacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTT > SRR13214404.2421538/14‑150 (MQ=36)
gacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTT < SRR13214404.3872255/137‑1 (MQ=36)
agatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCA < SRR13214404.4528366/140‑1 (MQ=40)
agatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCA < SRR13214404.2792757/140‑1 (MQ=40)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC > SRR13214404.1493490/1‑150 (MQ=41)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC < SRR13214404.1432841/150‑1 (MQ=41)
TATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACG < SRR13214404.106199/150‑1 (MQ=42)
TATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACG > SRR13214404.22451/1‑150 (MQ=42)
TATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACG > SRR13214404.3855537/1‑150 (MQ=42)
TATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACG < SRR13214404.2155668/150‑1 (MQ=42)
TATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACG > SRR13214404.22363/1‑150 (MQ=42)
ATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGT > SRR13214404.4107206/1‑150 (MQ=44)
ATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGT < SRR13214404.1021168/150‑1 (MQ=44)
tactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTG > SRR13214404.1657910/6‑150 (MQ=46)
actgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGA < SRR13214404.2355075/146‑1 (MQ=48)
CTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAG > SRR13214404.1073492/1‑150 (MQ=48)
TGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGA > SRR13214404.1682083/1‑150 (MQ=50)
ACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATT > SRR13214404.1505950/1‑150 (MQ=53)
ACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATT < SRR13214404.537815/150‑1 (MQ=53)
ACCAATTATACGTCAATAGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATT < SRR13214404.4554609/150‑1 (MQ=45)
CCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTC < SRR13214404.4553950/150‑1 (MQ=53)
CCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTC < SRR13214404.4357363/150‑1 (MQ=53)
CCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTC < SRR13214404.2436057/150‑1 (MQ=53)
CCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTC < SRR13214404.4647940/150‑1 (MQ=53)
CAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCG > SRR13214404.3989065/1‑150 (MQ=53)
CAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCG > SRR13214404.2192026/1‑150 (MQ=53)
CAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCG < SRR13214404.1261979/150‑1 (MQ=53)
CAATCATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCG < SRR13214404.1022738/150‑1 (MQ=45)
AATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGA > SRR13214404.2171612/1‑150 (MQ=53)
ATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAG > SRR13214404.4310793/1‑150 (MQ=53)
TATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAT < SRR13214404.2394278/150‑1 (MQ=53)
TATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAT > SRR13214404.2098559/1‑150 (MQ=53)
TATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAT > SRR13214404.3495070/1‑150 (MQ=53)
TATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAT > SRR13214404.681373/1‑150 (MQ=53)
ATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATA > SRR13214404.932929/1‑150 (MQ=53)
ATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTGTAGACTTGCAACGTGAGATTCGAGATA < SRR13214404.656860/150‑1 (MQ=45)
TACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAA > SRR13214404.1646751/1‑150 (MQ=55)
ACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAA > SRR13214404.2733720/1‑150 (MQ=56)
ACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAA < SRR13214404.1896303/150‑1 (MQ=56)
CGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAAC > SRR13214404.3476348/1‑150 (MQ=58)
GTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACT > SRR13214404.1654382/1‑150 (MQ=60)
GTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACT < SRR13214404.2893473/150‑1 (MQ=60)
TCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTA < SRR13214404.1195889/150‑1 (MQ=60)
AATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGG > SRR13214404.525715/1‑150 (MQ=60)
AATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGG < SRR13214404.945775/150‑1 (MQ=60)
AATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGG > SRR13214404.369192/1‑150 (MQ=60)
AATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGG > SRR13214404.2940054/1‑150 (MQ=60)
ATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGA > SRR13214404.116408/1‑150 (MQ=60)
TTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGAC > SRR13214404.2222129/1‑150 (MQ=60)
TTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGAC < SRR13214404.2239260/150‑1 (MQ=60)
TCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAAC < SRR13214404.1192251/150‑1 (MQ=60)
TCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAAC > SRR13214404.2291861/1‑150 (MQ=60)
CAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTG > SRR13214404.1555196/1‑150 (MQ=60)
CAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTG > SRR13214404.586671/1‑150 (MQ=60)
CAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTG > SRR13214404.1280144/1‑150 (MQ=60)
CAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTG < SRR13214404.454891/150‑1 (MQ=60)
AGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGC < SRR13214404.2780371/150‑1 (MQ=60)
AGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGC < SRR13214404.2780708/150‑1 (MQ=60)
AGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGC > SRR13214404.1923682/1‑150 (MQ=60)
GAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCA > SRR13214404.2524180/1‑150 (MQ=60)
GAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCA < SRR13214404.1953079/150‑1 (MQ=60)
AACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAAC < SRR13214404.1238401/150‑1 (MQ=60)
AACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAAC < SRR13214404.3202257/150‑1 (MQ=60)
ACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACT < SRR13214404.2692256/150‑1 (MQ=60)
ACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACT < SRR13214404.4342961/150‑1 (MQ=60)
ACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACT < SRR13214404.4621576/150‑1 (MQ=60)
TTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACTAT > SRR13214404.1029847/1‑150 (MQ=60)
TTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACTAT < SRR13214404.3270762/150‑1 (MQ=60)
TCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACTATG > SRR13214404.485812/1‑150 (MQ=60)
TCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACTATG < SRR13214404.46166/150‑1 (MQ=60)
TCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACTATG < SRR13214404.236430/150‑1 (MQ=60)
TTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACTATGCC < SRR13214404.183665/150‑1 (MQ=60)
TTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACTATGCC < SRR13214404.3205848/150‑1 (MQ=60)
TTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAACTTGCAATGGATAACTATGCC < SRR13214404.3208454/150‑1 (MQ=60)
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AAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTTTCTTGACGTAACAGAATCACTCAATTTCTTTTATCCTGAGATTAAAAATCGTTATGAACAAATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTCGGACTATATGTGACTGTGGGCATGGGAGACAATCCCTTGCTTGCCAAACTTGCAATGGATAACTATGCC > CP043523/1884707‑1884984
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |