Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F83 I1 R1
|
393 |
530.9 |
9427126 |
91.1% |
8588111 |
148.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCAGAAGCATAGATCTCACCCCCTCCCTAAGGCATTTCTGCATTGGTCAGGTGCGCCAATTTATATTGTAGCATATCAGGAAGGATTAGGCTATGTCAAATAAAAAATCAAAATATTGAAATACAAATATTAGTAAATTTCTATATTTTAAAAG > CP043523/1868332‑1868485
|
GCAGAAGCAT‑TATCTCACCCCCTCCCTAAGGCATTTCTGCATTGGTAAGGTACGCCActaaaaagtataccataaaaagggaatagatatgttcgtagtaggagatatccaattatcaagaaaactccaattttttggaaagttaaataa < SRR13214404.4353275/150‑94 (MQ=41)
GCAGAAGCAT‑TATCTCACCCCCCCCCTAAGGCATTTCTGCATTGGTAAGGTACGCCActaaaaagtataccataaaaagggaatagatatgttcgtagtaggagatatccaattatcaagaaaactccaattttttggaaagttaaataa < SRR13214404.1113024/150‑94 (MQ=27)
CAGAAGCAT‑TATCTCACCCCCTCCCTAAGGCATTTCTGCATTGGTAAGGTACGCCActaaaaagtataccataaaaagggaatagatatgttcgtagtaggagatatccaattatcaagaaaactccaattttttggaaagttaaataat > SRR13214404.863303/1‑56 (MQ=41)
AGAAGCAT‑TATCTCACCCCCTCCCTAAGGCATTTCTGCATTGGTAAGGTACGCCActaaaaagtataccataaaaagggaatagatatgttcgtagtaggagatatccaattatcaagaaagctccaattttttggaaagttaaataatg < SRR13214404.1289519/150‑96 (MQ=42)
GAAGCAT‑TATCTCACCCCCTCCCTAAGGCATTTCTGCATTGGTAAGGTACGCCActaaaaagtataccataaaaagggaatagatatgttcgtagtaggagatatccaattatcaagaaaactccaattttttggaaagttaaataatgt < SRR13214404.4459999/150‑97 (MQ=43)
|
GCAGAAGCATAGATCTCACCCCCTCCCTAAGGCATTTCTGCATTGGTCAGGTGCGCCAATTTATATTGTAGCATATCAGGAAGGATTAGGCTATGTCAAATAAAAAATCAAAATATTGAAATACAAATATTAGTAAATTTCTATATTTTAAAAG > CP043523/1868332‑1868485
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
