Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F15 I1 R5
|
785 |
665.2 |
22963641 |
98.6% |
22642150 |
138.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP025268 |
356,642 |
T→C |
intergenic (+137/+200) |
codA → / ← cynR |
cytosine/isoguanine deaminase/transcriptional regulator CynR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP025268 | 356,642 | 0 | T | C | 99.8%
| 1390.2
/ NA
| 461 | intergenic (+137/+200) | codA/cynR | cytosine/isoguanine deaminase/transcriptional regulator CynR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (184/275); minor base A (1/0); total (186/275) |
| Fisher's exact test for biased strand distribution p-value = 4.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 461 total aligned reads displayed.
AACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGTTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACT > NZ_CP025268/356505‑356778
|
caCGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTa < 1:4329288/139‑1 (MQ=255)
cTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTg > 1:11430783/1‑140 (MQ=255)
cAGCGAGCTTAGTTTATGCCGGATGCGTCGTGAACGCCTGATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCAGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACAGTGATTCAttc < 2:3706359/140‑2 (MQ=14)
cAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTAATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCAttc < 2:8216557/140‑2 (MQ=255)
gCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTTcc > 1:8744291/1‑140 (MQ=255)
aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCTGGCACTTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGAGTCATTCCCGcc > 1:4674230/1‑140 (MQ=11)
aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAGCTGTGTCAGCGGCTACCGTGATTCATTACCGcc > 1:765165/1‑140 (MQ=255)
gCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCca > 1:6163555/1‑140 (MQ=255)
cTTAGTTTATGTCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaa > 1:3819851/1‑140 (MQ=255)
cTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaa < 1:7244728/140‑1 (MQ=255)
gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCa < 2:11442473/140‑1 (MQ=21)
ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAt < 2:424426/140‑1 (MQ=21)
ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAt < 1:10592148/140‑1 (MQ=21)
ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAt < 2:10452195/140‑1 (MQ=21)
ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAt < 1:11230207/140‑1 (MQ=21)
ggATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAttc > 1:9649304/1‑139 (MQ=19)
cggcgTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCa < 1:221877/140‑1 (MQ=255)
cgTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACg > 1:3071996/1‑140 (MQ=255)
tGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGcc < 1:2875317/140‑1 (MQ=255)
aCGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCAtg < 2:5183789/140‑1 (MQ=255)
cGCCTTATCCGGCCTACGTAGATCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCTGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACTCCAtgt < 1:7780722/140‑1 (MQ=11)
cGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCAtgt < 1:8426646/140‑1 (MQ=255)
gCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATTAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCAtgtg < 2:463993/140‑1 (MQ=11)
tCCGGCCTACGTAGAGCACTGAACTCGTCGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCaaaaa < 1:8139379/140‑1 (MQ=11)
tCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCaaaaa < 1:7516501/140‑1 (MQ=255)
gCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCg > 2:8633684/1‑85 (MQ=255)
gCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGcc < 1:1610745/140‑1 (MQ=255)
ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTACTCCAACGCCATGTGCAAAAATGcat > 2:11285369/1‑138 (MQ=11)
gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCa < 2:1552337/140‑1 (MQ=255)
gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAGCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTGCTCCAACGCCATGTGCAAAAATGCCTTCGcg > 1:1799498/1‑139 (MQ=255)
agCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCAtt > 2:5685838/1‑104 (MQ=25)
agCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCgg < 1:6379869/140‑1 (MQ=255)
agCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGCCAACAACCGCGCATTACTCCAACGCCATGTGCAAAAATGCCTTCGCTGCgg > 2:6264439/1‑140 (MQ=11)
cACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCt < 1:2151555/140‑1 (MQ=255)
tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑c > 2:3192483/1‑140 (MQ=255)
tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑c > 1:2734296/1‑140 (MQ=255)
tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGCCAACAACCGCGCATTAATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGT‑c > 1:8265198/1‑140 (MQ=255)
gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGT‑Ct > 2:2938797/1‑140 (MQ=11)
aaCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGT‑CTg > 1:2484920/1‑140 (MQ=12)
aaCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTg > 1:1455809/1‑140 (MQ=255)
aaCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTg < 2:987208/140‑1 (MQ=255)
aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCGGT‑CTGc < 2:4049370/140‑1 (MQ=11)
cTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGcc < 2:2457921/140‑1 (MQ=255)
tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCACAAATGCCTTCGCAGCGGCTGT‑CTGCCa > 2:1786879/1‑140 (MQ=11)
tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCa < 1:685468/140‑1 (MQ=255)
gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGT‑CTGCCAGc > 1:820940/1‑140 (MQ=17)
gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGT‑CTGCCAGc > 1:11071897/1‑140 (MQ=11)
gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGGGATTCATGCCCGCCAACAACCGCGCATGCCTCCAACGCCATGTGCAAAATTGCCTTCGCAGCGGCTGT‑CTGCCAGc > 1:2665667/1‑140 (MQ=11)
tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCACCAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCt < 1:4981370/140‑1 (MQ=11)
tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGT‑CTGCCAGCt > 2:6372617/1‑140 (MQ=11)
tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCt < 1:6894073/140‑1 (MQ=255)
aGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCAGTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTg < 2:3015586/140‑1 (MQ=11)
ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGNGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAg > 1:6042840/1‑140 (MQ=255)
gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTACAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGtta > 2:6142020/1‑139 (MQ=14)
gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGtgt > 2:6781130/1‑138 (MQ=14)
cGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTTCCGCcaa > 2:7567334/1‑66 (MQ=255)
tAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAtt > 2:2315142/1‑76 (MQ=255)
tAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGa > 2:10978282/1‑140 (MQ=255)
cgcATCAGGCAATTCCAGCCGCTGAGCTGTGTCAGCGGCTACCGTGATGCATTCCCGCCCACAACCGCGCATTCCTCCAACGCCATGTGCCACATTGCCGTCGCAGCGGCGGG‑CTGCCCGCTGGAGTTTATGCGGGATgc > 1:9984585/1‑140 (MQ=14)
tCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTACTCCAACGCCATGTGCAAAAATGCCTTCGCCGCGGCTGT‑CTGCCAGCTCTATTTTCTGCGGGaagagtcg > 2:7990001/1‑133 (MQ=11)
cAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAATGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGAGGCGt > 1:4134348/1‑140 (MQ=17)
cAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTAATCCCCGAAGCGGCGt > 2:144112/1‑140 (MQ=14)
cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGt > 2:8845904/1‑140 (MQ=14)
aGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTg < 2:1981232/140‑1 (MQ=255)
aGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTg < 2:9649303/140‑1 (MQ=255)
ggCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAAAGCCATCGCAGCGGCAGA‑ATGCGAGCAGTAGGTAATACCGGATGCGGCGTGa > 2:8486481/1‑140 (MQ=17)
ggCAATTCCAGCCGCTGACACAGATCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAGTCCTCCACCGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATTCCGGATGCGGCGTGa < 1:9277130/140‑1 (MQ=17)
gCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACCACCGCGCATTCCTCCCACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGGTGTAGTTTATGCCGGATGCGGCGTGaa < 2:5563703/140‑1 (MQ=18)
gCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAGTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGaa < 1:10016076/140‑1 (MQ=18)
aTTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGc < 1:4499933/140‑1 (MQ=255)
aTTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGAGTCATTCCCGCCAACACCCGCGCAGTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGc < 2:5925110/140‑1 (MQ=18)
cgCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 2:838591/139‑1 (MQ=255)
aGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 2:9447710/140‑1 (MQ=255)
aGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 1:10842281/140‑1 (MQ=255)
aGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 1:3192484/140‑1 (MQ=255)
aGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 2:5371818/140‑1 (MQ=255)
aGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 2:9512477/140‑1 (MQ=255)
aGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 2:3331511/140‑1 (MQ=255)
ccGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATcc < 1:5483412/140‑1 (MQ=255)
ccGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATcc < 1:1988945/140‑1 (MQ=255)
ccGCTGATCTGTGTCAGCGGCTACCGAGATGCATTCCCGCCAACAACCGCGCATTCCTCCCACGCCATGGGCAAAAATGCCTTCGCAGCGGCGGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATcc < 1:9862942/140‑1 (MQ=38)
cTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:3436659/140‑1 (MQ=255)
cTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:10978283/140‑1 (MQ=255)
cTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:10397720/140‑1 (MQ=255)
cTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGc < 2:2705518/140‑1 (MQ=255)
gATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:1351701/140‑1 (MQ=255)
gATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGAGTGAACGCCTTATCCGGCCt < 1:7065202/140‑1 (MQ=21)
gATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAGTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:903344/140‑1 (MQ=21)
gATCTGTGTCAGCGGCTACCGTGATTCAGTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 2:4985830/140‑1 (MQ=21)
aTCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCtc > 1:9582106/1‑139 (MQ=255)
cTGTGTGAGCTGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTACCCCAACGCCATGTTCAAAAATGGCTTCGCTTCGGGTTTACTCCTTGC‑GTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg < 1:5245644/140‑1 (MQ=12)
gtgtCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTa < 1:10286866/140‑1 (MQ=255)
tgtCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACTCCTTATCCGGCCTACGTag > 2:10225035/1‑140 (MQ=21)
tgtCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTGATGCCGGATGCGGCGTGACAGCCGTAACCGGCCTACGtcg > 2:7238951/1‑138 (MQ=18)
gtCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTaga < 1:6572925/140‑1 (MQ=255)
tCAGCGGCTACCGTGCATCATTCCCGCCCACCACCGCGCATTCCTCCCACGCCATGTGCAAAAAGGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTagag < 2:9256414/140‑1 (MQ=25)
aGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAACAAGGCCTTCGCTGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCa < 2:2143086/140‑1 (MQ=37)
gCGGCTACCGTGATTCATTCCCGCCAACAACCGTGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCAc > 1:94483/1‑140 (MQ=25)
gCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTTCGTAGAGCAc > 1:3620144/1‑140 (MQ=21)
gCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGAATCTGCGTGAACGCAGTAACCGGCCTACGTAGCGCAc > 2:10579733/1‑140 (MQ=18)
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AACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGTTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGT‑CTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACT > NZ_CP025268/356505‑356778
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
