Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F50 I1 R3	779	308.9	10220750	96.7%	9883465	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,488,932	(C)_7→6	pseudogene (525/3595 nt)	evgS →	acid‑sensing system histidine kinase EvgS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,488,926	0	C	.	98.7%	707.9 / 4.7	154	pseudogene (519/3595 nt)	evgS	acid‑sensing system histidine kinase EvgS
Reads supporting (aligned to +/- strand): ref base C (0/2); major base . (85/65); minor base A (1/1); total (86/68)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 173 total aligned reads displayed.

TTCGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAG  >  NZ_CP025268/2488788‑2489058

  cgccgcCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAcccc                                                                                                                                   <  1:3137003/140‑1 (MQ=255)

  cgccgcCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAcccc                                                                                                                                   >  1:3186335/1‑140 (MQ=255)

    ccgccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAcccccc                                                                                                                                 >  1:2726565/1‑140 (MQ=255)

    ccgccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAcccccc                                                                                                                                 >  2:4828886/1‑140 (MQ=255)

    ccgccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAcccccc                                                                                                                                 >  2:1558955/1‑140 (MQ=255)

      gccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAccccccag                                                                                                                               <  2:2861778/140‑3 (MQ=255)

       ccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTCAATATTGCTCGGGTAGCAAATTAccccccaga                                                                                                                              <  2:2240124/140‑4 (MQ=255)

       ccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAccccccaga                                                                                                                              <  1:3415253/140‑4 (MQ=255)

       ccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAccccccaga                                                                                                                              <  1:2579040/140‑4 (MQ=255)

       ccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCGTACCTCACCAAAACCAGTAAATAGTGCTCGGGTAGCAAATGAccccccaga                                                                                                                              <  2:351451/140‑4 (MQ=255)

          ctTACTAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGa                                                                                                                          >  2:4680624/1‑140 (MQ=255)

               taatGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTaa                                                                                                                     <  1:2399829/140‑1 (MQ=255)

               taatGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTaa                                                                                                                     <  1:2587958/140‑1 (MQ=255)

                  tGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATtc                                                                                                                  >  2:4452216/1‑140 (MQ=255)

                  tGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATtc                                                                                                                  >  2:1664042/1‑140 (MQ=255)

                  tGACATGGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATtc                                                                                                                  >  2:3452161/1‑140 (MQ=255)

                    aCATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATtcat                                                                                                                >  2:4010889/1‑140 (MQ=255)

                     cATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATtcatc                                                                                                               >  1:888427/1‑140 (MQ=255)

                     cATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATtcatc                                                                                                               >  1:4257491/1‑140 (MQ=255)

                     cATAGCTGCAACCAAACCATTGATAATTACCTTTGAGGAGCTCGCAACAACCCTTCACAACACAAGGCGACCGCTTACTTCACCAAAACCAGTAAATCTTGCAAGGGTAGCAACTTA‑CCCACGAGACGAGGAAAGtcaca                                                                                                               >  2:885513/1‑138 (MQ=255)

                       ttGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCatcaa                                                                                                             >  2:5097352/1‑140 (MQ=255)

                         gctgcAACCAATCCATTGATAATTACCTTTCCGGCGCTGTTAACCACCCTTCACGACTCAATGCTACCGCTTACCTCCCCAAAACCAGTAAATATTGCTCGGGTAGCAAATT‑CCCCCCCACACGAGGTAATTCatcaatc                                                                                                           <  2:3844030/140‑1 (MQ=255)

                         gctgcAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCatcaatc                                                                                                           <  2:4783603/140‑1 (MQ=255)

                           tgcAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCAt                                                                                                         >  1:267076/1‑140 (MQ=255)

                             cAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCAttt                                                                                                       >  2:4964110/1‑140 (MQ=255)

                             cAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCAttt                                                                                                       >  1:4636462/1‑140 (MQ=255)

                             cAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCAttt                                                                                                       >  1:4595051/1‑140 (MQ=255)

                               accaaaccaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTcc                                                                                                     >  2:3678255/1‑140 (MQ=255)

                                ccaaaccaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCa                                                                                                    >  1:2613229/1‑140 (MQ=255)

                                    accaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAg                                                                                                >  2:198322/1‑140 (MQ=255)

                                    accaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAg                                                                                                >  1:1358841/1‑140 (MQ=255)

                                     ccaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGc                                                                                               <  1:179128/140‑1 (MQ=255)

                                     ccaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGc                                                                                               <  1:29970/140‑1 (MQ=255)

                                     ccaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGc                                                                                               <  1:179145/140‑1 (MQ=255)

                                     ccaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGc                                                                                               <  1:2281092/140‑1 (MQ=255)

                                      caTTGATAATTACCTTTCCGGCGCTAGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGca                                                                                              <  2:1708898/140‑1 (MQ=255)

                                         tGATAAGTACCTTTCCGGGGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAATCCAGTAAATATTGGTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCTTCCATCATTTCCAAAATcaaca                                                                                           >  2:1370967/1‑140 (MQ=255)

                                                tACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTAtct                                                                                    >  1:85993/1‑140 (MQ=255)

                                                tACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGGAATTCATCAATCATTTCCAAAAGCAACAATTAtct                                                                                    >  1:4617246/1‑140 (MQ=255)

                                                     ttCCGGCGCTGGTAACCACCCTTCACGCCTCAATGCCACCGCTTACCTGACCCAAACCAGTAAATATTGCTCGGGTAGCAAA‑TAACCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAAGTGACTCttat                                                                               >  2:3730471/1‑138 (MQ=255)

                                                     ttCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCtttt                                                                               >  1:3328725/1‑140 (MQ=255)

                                                     ttCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCtttt                                                                               >  2:2071133/1‑140 (MQ=255)

                                                     ttCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCtttt                                                                               >  2:3320265/1‑140 (MQ=255)

                                                     ttCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCtttt                                                                               >  2:4696514/1‑140 (MQ=255)

                                                      tCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTa                                                                              >  1:4375658/1‑140 (MQ=255)

                                                       ccGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTAc                                                                             >  1:2596956/1‑140 (MQ=255)

                                                             cTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAAttt                                                                       >  1:1534761/1‑140 (MQ=255)

                                                                        ccTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAt                                                            <  2:3151355/140‑1 (MQ=255)

                                                                        ccTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAt                                                            >  1:3899850/1‑140 (MQ=255)

                                                                        ccTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAt                                                            >  1:4457682/1‑140 (MQ=255)

                                                                        ccTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAt                                                            >  2:2633708/1‑140 (MQ=255)

                                                                          ttCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTa                                                          >  1:3761698/1‑140 (MQ=255)

                                                                          ttCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTa                                                          >  2:466685/1‑140 (MQ=255)

                                                                          ttCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CACCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGTCATTa                                                          >  1:3011875/1‑140 (MQ=255)

                                                                             acaaCTCAATGCGACCGCTTACCTCACCAAAACCATTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATCTCAGGCATTAGCa                                                       <  2:2481438/137‑1 (MQ=255)

                                                                             aCGTCTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATACTGCTCGGGTAGCAAATT‑CCCCCCCAGCCGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCa                                                       <  1:522751/140‑1 (MQ=255)

                                                                             aCGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCa                                                       <  1:4978102/140‑1 (MQ=255)

                                                                             aCGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCa                                                       <  2:518929/140‑1 (MQ=255)

                                                                             aCGACTCAATGCGACCACTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAA‑TAACCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCa                                                       <  1:2847646/140‑1 (MQ=255)

                                                                                  tCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGt                                                  <  2:2559978/140‑1 (MQ=255)

                                                                                    aaTGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCCAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGtct                                                >  1:3644696/1‑140 (MQ=255)

                                                                                    aaTGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGtct                                                <  1:1129506/140‑1 (MQ=255)

                                                                                      tGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCa                                              >  1:4689672/1‑140 (MQ=255)

                                                                                      tGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCa                                              >  2:2429831/1‑140 (MQ=255)

                                                                                           ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTgg                                         >  1:1658038/1‑140 (MQ=255)

                                                                                           ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAGTAGCATCTGTCTCAGCTgg                                         >  2:2671077/1‑140 (MQ=255)

                                                                                           ccGCTTACATCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGAATTAGCATCCGTCTCAGCTgg                                         >  2:1830771/1‑140 (MQ=255)

                                                                                           ccGCGTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGCCGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTGTACAAATTTATATCAGGCATTAGCATCCGTCTGCGCTgg                                         >  2:2670804/1‑140 (MQ=255)

                                                                                             gCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGc                                       <  2:1155320/140‑1 (MQ=255)

                                                                                             gCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGc                                       <  1:5018163/140‑1 (MQ=255)

                                                                                             gCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGc                                       <  2:85993/140‑1 (MQ=255)

                                                                                               ttACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGcac                                     <  2:1235881/140‑1 (MQ=255)

                                                                                                tACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGcaca                                    >  2:3034936/1‑140 (MQ=255)

                                                                                                tACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAACTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGcaca                                    >  1:4390599/1‑140 (MQ=255)

                                                                                                    tCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGa                                <  2:3761698/140‑1 (MQ=255)

                                                                                                     cACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGAt                               <  1:2071133/140‑1 (MQ=255)

                                                                                                      aCCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGAtt                              <  2:783770/140‑1 (MQ=255)

                                                                                                      aCCAAAACCAGTAAATATTGCGCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGAtt                              >  2:3236238/1‑140 (MQ=255)

                                                                                                        cAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTATCAGCTGGGCACAATGATTAc                            >  2:3387609/1‑140 (MQ=255)

                                                                                                         aaaaCCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACt                           <  2:420910/140‑1 (MQ=255)

                                                                                                            aCCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTa                        <  1:4088181/140‑1 (MQ=255)

                                                                                                             ccAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTAt                       <  2:4636462/140‑1 (MQ=255)

                                                                                                              cAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTAtt                      <  1:162622/140‑1 (MQ=255)

                                                                                                              cAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTAtt                      <  2:2908188/140‑1 (MQ=255)

                                                                                                              cAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTAtt                      <  2:1779773/140‑1 (MQ=255)

                                                                                                                gTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTgg                    <  1:2205985/140‑1 (MQ=255)

                                                                                                                gTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTgg                    <  2:1358841/140‑1 (MQ=255)

                                                                                                                 tAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAAGTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATGAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGgt                   >  1:1893654/1‑140 (MQ=255)

                                                                                                                     tatTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGgtagta               <  1:1562762/140‑1 (MQ=255)

                                                                                                                     tatTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGgtagta               <  1:1558955/140‑1 (MQ=255)

                                                                                                                         gCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAAcat           >  2:4441767/1‑140 (MQ=255)

                                                                                                                         gCTCGGGTAGCAAAGTA‑CCTCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATGATCTCTTTTACAAATTTATATCAGGCATTAGCGTCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTACTAAcat           >  2:4275180/1‑140 (MQ=255)

                                                                                                                          cTCGGGTAGCAAATTA‑CCCCCCAGACGGGGTCCTGCATCAATCATTGCCCAAAGCAACAGGTATCTCTTTTGCAAATTCCTCTCGGCCATTAGACTCAGTCTCAGCTGGGCACAATGATAACAATGTTGATAGTaaggtg          >  2:930101/1‑136 (MQ=255)

                                                                                                                           tCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAAcatca         >  1:3294772/1‑140 (MQ=255)

                                                                                                                               ggaGCAAGTTA‑CCCCCCAGACGAGGTAATGTATGAATCATTTCTAAAAGCCACAATTATCTCTTTTCCAAATTTATATCAGGCATTAGCATCCGTCTCATCTGGTCATAATGATTACTGTATTCGTAGTAATATCAGTAc     >  2:640018/3‑140 (MQ=255)

                                                                                                                               gTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGa                                <  2:3791389/113‑1 (MQ=255)

                                                                                                                               gTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGa                                >  1:3791389/1‑113 (MQ=255)

                                                                                                                               gTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTATTAACATCATTAc     <  2:5042430/140‑1 (MQ=255)

                                                                                                                                tAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTAAAAATTTATATCAGGCATTAGCATCCGTCTCAGCGGGGCACAATGATTACTTTATTGGTAGTAACATCATTAcc    <  2:553749/140‑1 (MQ=255)

                                                                                                                                  gCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACcag  <  2:3899850/140‑1 (MQ=255)

TTCGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAG  >  NZ_CP025268/2488788‑2489058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAGCAGTATGATTTCCCGCTATTTCAC  >  NZ_CP025268/2488790‑2489082

CGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGT                                                                                                                                               <  SRR14920166.3143780/151‑1 (MQ=60)

     CCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTC                                                                                                                                          <  SRR14920166.3807541/151‑1 (MQ=60)

     CCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTC                                                                                                                                          <  SRR14920166.3422679/151‑1 (MQ=60)

     CCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTC                                                                                                                                          <  SRR14920166.3422501/151‑1 (MQ=60)

     CCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTC                                                                                                                                          <  SRR14920166.2584264/151‑1 (MQ=60)

       TCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCAT                                                                                                                                        >  SRR14920166.4109339/1‑151 (MQ=60)

        CTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATC                                                                                                                                       >  SRR14920166.890364/1‑151 (MQ=60)

        CTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATC                                                                                                                                       >  SRR14920166.4266827/1‑151 (MQ=60)

           AATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAAT                                                                                                                                    >  SRR14920166.2610094/1‑151 (MQ=60)

            agcgtgcccaagcacgatggactgctgcagttgtttcaagcagaagacggcatacgagatctgcgcatgtctcgtgggctcggagatgtgtataagagacagATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATC                                                                                                                                   <  SRR14920166.126986/49‑1 (MQ=60)

             TAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCA                                                                                                                                  <  SRR14920166.2593192/151‑1 (MQ=60)

             TAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCA                                                                                                                                  <  SRR14920166.2404692/151‑1 (MQ=60)

              AATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCAT                                                                                                                                 >  SRR14920166.267716/1‑151 (MQ=60)

                TGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCCTCAATCATTT                                                                                                                               >  SRR14920166.4646647/1‑151 (MQ=60)

                TGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTT                                                                                                                               >  SRR14920166.4605173/1‑151 (MQ=60)

                   CATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCA                                                                                                                            >  SRR14920166.2618497/1‑151 (MQ=60)

                       GCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAG                                                                                                                        >  SRR14920166.1361603/1‑151 (MQ=60)

                            AACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACA                                                                                                                   >  SRR14920166.3215934/1‑151 (MQ=60)

                             ACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAA                                                                                                                  >  SRR14920166.2926325/1‑151 (MQ=60)

                                   CCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCT                                                                                                            <  SRR14920166.30061/151‑1 (MQ=60)

                                   CCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCT                                                                                                            >  SRR14920166.4627818/1‑151 (MQ=60)

                                   CCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCT                                                                                                            <  SRR14920166.2285757/151‑1 (MQ=60)

                                   CCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCT                                                                                                            <  SRR14920166.179575/151‑1 (MQ=60)

                                   CCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCT                                                                                                            >  SRR14920166.86215/1‑151 (MQ=60)

                                   CCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCT                                                                                                            <  SRR14920166.179592/151‑1 (MQ=60)

                                   CCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGGAATTCATCAATCATTTCCAAAAGCAACAATTATCT                                                                                                            >  SRR14920166.4627397/1‑151 (MQ=60)

                                        GATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTT                                                                                                       >  SRR14920166.3335850/1‑151 (MQ=60)

                                         ATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTA                                                                                                      >  SRR14920166.4385180/1‑151 (MQ=60)

                                          TAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTAC                                                                                                     >  SRR14920166.2602200/1‑151 (MQ=60)

                                              TACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAAT                                                                                                 >  SRR14920166.1805515/1‑151 (MQ=60)

                                                CCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTT                                                                                               >  SRR14920166.1537885/1‑151 (MQ=60)

                                                   TTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATA                                                                                            >  SRR14920166.2327030/1‑151 (MQ=60)

                                                           CTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAT                                                                                    >  SRR14920166.4467440/1‑151 (MQ=60)

                                                           CTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAT                                                                                    >  SRR14920166.3908389/1‑151 (MQ=60)

                                                             GGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTA                                                                                  >  SRR14920166.3183836/1‑151 (MQ=60)

                                                             GGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTA                                                                                  >  SRR14920166.3769951/1‑151 (MQ=60)

                                                             GGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTA                                                                                  >  SRR14920166.4435853/1‑151 (MQ=60)

                                                             GGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTACCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTA                                                                                  >  SRR14920166.3017679/1‑151 (MQ=60)

                                                             GGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CACCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGTCATTA                                                                                  >  SRR14920166.3018256/1‑151 (MQ=60)

                                                                AACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCA                                                                               <  SRR14920166.2732390/151‑1 (MQ=60)

                                                                AACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCA                                                                               <  SRR14920166.1958310/151‑1 (MQ=60)

                                                                   CACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCC                                                                            <  SRR14920166.4019671/151‑1 (MQ=60)

                                                                       CTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCCAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCT                                                                        >  SRR14920166.3652486/1‑151 (MQ=60)

                                                                       CTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCT                                                                        >  SRR14920166.2161649/1‑151 (MQ=60)

                                                                         TCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCA                                                                      >  SRR14920166.4699948/1‑151 (MQ=60)

                                                                         TCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCA                                                                      >  SRR14920166.45969/1‑151 (MQ=60)

                                                                           ACGTCTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATACTGCTCGGGTAGCAAATT‑CCCCCCCAGCCGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGC                                                                    <  SRR14920166.523932/151‑1 (MQ=60)

                                                                           ACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGC                                                                    <  SRR14920166.4988766/151‑1 (MQ=60)

                                                                           ACGACTCAATGCGACCACTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAA‑TAACCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGC                                                                    <  SRR14920166.2853696/151‑1 (MQ=60)

                                                                             GACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTG                                                                  <  SRR14920166.595598/151‑1 (MQ=60)

                                                                              ACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGG                                                                 >  SRR14920166.1661416/1‑151 (MQ=60)

                                                                                  AATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCAC                                                             <  SRR14920166.1131871/151‑1 (MQ=60)

                                                                                   ATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAACTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACA                                                            >  SRR14920166.4400143/1‑151 (MQ=60)

                                                                                           GCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTAC                                                    <  SRR14920166.5028895/151‑1 (MQ=60)

                                                                                                   CACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGG                                            <  SRR14920166.2075428/151‑1 (MQ=60)

                                                                                                    ACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAAGTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATGAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGT                                           >  SRR14920166.1897554/1‑151 (MQ=60)

                                                                                                     CCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTA                                          >  SRR14920166.3740302/1‑151 (MQ=60)

                                                                                                         AACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAA                                      >  SRR14920166.3362915/1‑151 (MQ=60)

                                                                                                          ACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAAC                                     <  SRR14920166.4097119/151‑1 (MQ=60)

                                                                                                          ACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAAC                                     >  SRR14920166.2417384/1‑151 (MQ=60)

                                                                                                          ACCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAAC                                     <  SRR14920166.2600420/151‑1 (MQ=60)

                                                                                                           CCAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACA                                    >  SRR14920166.1523522/1‑151 (MQ=60)

                                                                                                            CAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACAT                                   <  SRR14920166.90114/151‑1 (MQ=60)

                                                                                                            CAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACAT                                   >  SRR14920166.1552731/1‑151 (MQ=60)

                                                                                                            CAGTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACAT                                   <  SRR14920166.163035/151‑1 (MQ=60)

                                                                                                            CAGTAAAAATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGAAACAATTATCGCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACAT                                   <  SRR14920166.4398229/151‑1 (MQ=60)

                                                                                                              GTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCA                                 >  SRR14920166.3301847/1‑151 (MQ=60)

                                                                                                              GTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCA                                 <  SRR14920166.2210513/151‑1 (MQ=60)

                                                                                                              GTAAATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCA                                 <  SRR14920166.1667434/151‑1 (MQ=60)

                                                                                                                  ATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGctgtctcttatacaca                             >  SRR14920166.3799694/1‑135 (MQ=60)

                                                                                                                  ATATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCAGCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTAC                             <  SRR14920166.4659948/151‑1 (MQ=60)

                                                                                                                   TATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACC                            <  SRR14920166.1565944/151‑1 (MQ=60)

                                                                                                                   TATTGCTCGGGTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACC                            <  SRR14920166.1562132/151‑1 (MQ=60)

                                                                                                                             GTAGCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAGCAGTATGA                  <  SRR14920166.2639016/151‑1 (MQ=60)

                                                                                                                                GCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAGCAGTATGATTT               <  SRR14920166.160141/151‑1 (MQ=60)

                                                                                                                                GCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAGCAGTATGATTT               <  SRR14920166.5014114/151‑1 (MQ=60)

                                                                                                                                GCAAATTA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAGCAGTATGATTT               <  SRR14920166.1637256/151‑1 (MQ=60)

                                                                                                                                       taCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAGCAGTATGATTTCCCGCT         <  SRR14920166.4607308/149‑1 (MQ=60)

                                                                                                                                           CCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAGCAGTATGATTTCCCGCTATTT     >  SRR14920166.4620946/1‑151 (MQ=60)

                                                                                                                                              CAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAGCAGTATGATTTCCCGCTATTTCAC  <  SRR14920166.1862557/151‑1 (MQ=60)

CGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAGCAGTATGATTTCCCGCTATTTCAC  >  NZ_CP025268/2488790‑2489082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`