Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F50 I1 R3	779	308.9	10220750	96.7%	9883465	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,790,751	A→G	pseudogene (333/2252 nt)	CXP41_RS24390 →	alpha‑amylase family glycosyl hydrolase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,790,751	0	A	G	100.0%	498.6 / NA	147	pseudogene (333/2252 nt)	CXP41_RS24390	alpha‑amylase family glycosyl hydrolase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (86/61); total (86/61)

Only 100 of 147 total aligned reads displayed.

AGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGAT‑A‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAAC  >  NZ_CP025268/2790616‑2790885

    aaaGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCa                                                                                                                                  <  1:4149833/140‑1 (MQ=255)

      aGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAAc                                                                                                                                <  1:2888817/140‑1 (MQ=255)

          attaATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGACAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACgaga                                                                                                                            <  2:1591711/140‑1 (MQ=255)

                    tGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGAtt                                                                                                                 >  1:1011876/1‑140 (MQ=255)

                      ttAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGa                                                                                                               <  1:4152294/140‑1 (MQ=255)

                      ttAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGa                                                                                                               <  2:1748015/140‑1 (MQ=255)

                        aaaaaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGaaa                                                                                                             <  1:3209234/140‑1 (MQ=255)

                              cGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTg                                                                                                       >  2:4268443/1‑140 (MQ=255)

                              cGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTg                                                                                                       >  1:3628604/1‑140 (MQ=255)

                                aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGAt                                                                                                     >  1:722929/1‑140 (MQ=255)

                                  tataAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATaa                                                                                                   <  2:3213451/140‑1 (MQ=255)

                                     aaaaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAACAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAg                                                                                                <  1:1969410/140‑1 (MQ=255)

                                     aaaaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAg                                                                                                <  2:3351208/140‑1 (MQ=255)

                                     aaaaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAg                                                                                                <  2:1124218/140‑1 (MQ=255)

                                       caTTTACCTTCCCTCAGATACCAATTACCGAGAGTTGAATAAAGCAGCACAGCGTACCATTACAGCGCCAGACAGGATATGATAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCg                                                                                              <  2:2778800/139‑1 (MQ=255)

                                       aaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCg                                                                                              <  2:1756946/140‑1 (MQ=255)

                                             ccTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                        <  1:3778544/140‑1 (MQ=255)

                                             ccTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                        <  1:395878/140‑1 (MQ=255)

                                             ccTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                        <  1:395892/140‑1 (MQ=255)

                                             ccTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                        <  1:5013362/140‑1 (MQ=255)

                                             ccTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                        <  1:5013025/140‑1 (MQ=255)

                                               tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                        <  1:1669493/138‑1 (MQ=255)

                                               tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                        >  2:1669493/1‑138 (MQ=255)

                                                        aTACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGt                                                                             >  2:3883104/1‑140 (MQ=255)

                                                            aaCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTg                                                                         <  1:2261707/140‑1 (MQ=255)

                                                              cTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCt                                                                       >  1:1886653/1‑140 (MQ=255)

                                                              cTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCt                                                                       >  1:1886654/1‑140 (MQ=255)

                                                              cTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCt                                                                       >  2:1562239/1‑140 (MQ=255)

                                                               ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg                                                                      >  2:5018128/1‑140 (MQ=255)

                                                               ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg                                                                      <  1:2451283/140‑1 (MQ=255)

                                                                 aCCGAGAGTTGATTAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                                    >  2:5048804/1‑140 (MQ=255)

                                                                 aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                                    >  1:4550841/1‑140 (MQ=255)

                                                                 aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                                    >  1:864515/1‑140 (MQ=255)

                                                                 aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                                    >  1:4546672/1‑140 (MQ=255)

                                                                 aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAAGGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                                    >  2:4981573/1‑140 (MQ=255)

                                                                  ccGAGAGTTGAATAAAGCAGCACAGCGGAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAAAAGCGGTGTTTATCAGTATGGTCGTGCTGAAc                                                                   >  2:4681080/1‑140 (MQ=255)

                                                                         ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTa                                                                                 >  2:2261521/1‑119 (MQ=255)

                                                                         ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc                                                            >  1:2812915/1‑140 (MQ=255)

                                                                          tGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc                                                           <  1:3092414/140‑1 (MQ=255)

                                                                              tAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCcaca                                                       <  2:1826899/140‑1 (MQ=255)

                                                                                 agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta                                                    >  1:3618622/1‑140 (MQ=255)

                                                                                  gcagcaCAGCGTAACATTACAGCGCCAGGCAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAAAT‑ACAATGATTGAAAGAGGTGATAACAGCTGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATtat                                                   <  2:2067532/140‑1 (MQ=255)

                                                                                    agcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTatat                                                 >  2:3865218/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                               >  2:1814189/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                               >  2:1265262/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                               >  2:888212/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                               >  1:4895295/1‑140 (MQ=255)

                                                                                      cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                               >  1:165173/1‑140 (MQ=255)

                                                                                      cacaGCATAGCAATAGAGCTCAAGAAAGGGTGGACAAAAGATAAATATAGGTTTATTAACGAGATAA‑AATAATTGAAAGAGAGGATAACAGTGTTGTATATCAATCTGGTGGTGCTGAACATTTCACCCACATTATATCt                                               >  2:2052181/1‑140 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                          >  1:4712909/1‑140 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                          >  1:1978259/1‑140 (MQ=255)

                                                                                           cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                          >  1:3635241/1‑140 (MQ=255)

                                                                                             tcgCATTACAGCGACAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATCACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAc                                        <  1:878232/138‑1 (MQ=255)

                                                                                                cATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAATGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCtt                                     >  2:4530195/1‑140 (MQ=255)

                                                                                                cATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCtt                                     >  1:1732709/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTAt                                                                                                                                    <  1:2407939/41‑1 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGGGAT‑ACAATGAGTGAAAGAGGGGATAACAGCGGTGTATAACAGTATGGTCGTGCTGAAAATTTCACCCACATTATATCTGACAAACCTTCCCCa                                >  2:3113976/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc                                                           <  1:133710/113‑1 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc                                                           >  2:133710/1‑113 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCTCa                                >  2:2752692/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                >  1:2210622/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                >  1:2185499/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                <  1:4210079/140‑1 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                >  1:1914371/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                >  1:1914046/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                >  1:2210796/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                <  2:3541590/140‑1 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                >  1:1354527/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                >  2:2361690/1‑140 (MQ=255)

                                                                                                     cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                                >  1:2290598/1‑140 (MQ=255)

                                                                                                      aGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa                               <  1:3448757/140‑1 (MQ=255)

                                                                                                      aGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa                               <  1:4268443/140‑1 (MQ=255)

                                                                                                        cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa                             >  2:3198780/1‑140 (MQ=255)

                                                                                                        cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa                             >  1:555085/1‑140 (MQ=255)

                                                                                                        cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa                             >  2:62117/1‑140 (MQ=255)

                                                                                                        cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa                             >  2:4396383/1‑140 (MQ=255)

                                                                                                          ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTCCACCCACATTATATCTGACAAACCTTCCCCAAAAGa                           >  2:3037254/1‑140 (MQ=255)

                                                                                                           cAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGAt                          <  1:1003405/140‑1 (MQ=255)

                                                                                                           cAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGAt                          <  1:1003279/140‑1 (MQ=255)

                                                                                                                 ggATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAatat                    <  2:5016222/140‑1 (MQ=255)

                                                                                                                  gATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATg                   >  1:2368854/1‑140 (MQ=255)

                                                                                                                  gATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATg                   >  1:2368855/1‑140 (MQ=255)

                                                                                                                  gATAGGAGAAAGAAAAACATAGGTTTATCAACGAGAG‑ACAATGATTGAAAGAGGGGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATGTCACCCACATTATATCTGACAAACCTTCCCCGAAAGATAAATATg                   >  2:4413658/1‑140 (MQ=255)

                                                                                                                    tAGGAGAAAGAAAAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGtt                 <  2:2062473/140‑1 (MQ=255)

                                                                                                                         gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa                               <  2:2890430/121‑1 (MQ=255)

                                                                                                                         gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa                               >  1:2890430/1‑121 (MQ=255)

                                                                                                                         gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata            <  2:1123868/140‑1 (MQ=255)

                                                                                                                         gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata            <  2:2290598/140‑1 (MQ=255)

                                                                                                                         gaaagaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata            <  2:4496382/140‑1 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACGATGATGGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACAGTTCACCCACATTATATCTGACAGACCTTCGCTAAAAAATACATAGGGTGCATATGc         >  2:2843156/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata            <  2:2389953/137‑1 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata            <  1:3858843/137‑1 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata            >  2:3858843/1‑137 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc         >  1:2991709/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc         >  1:2777816/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc         >  2:4741927/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc         >  2:4231232/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTGCCCCAAAAGATAAATATGTTGCATATGc         >  1:1667841/1‑140 (MQ=255)

                                                                                                                            agaaaAACATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGGTTAGCAGTATGGTTGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTTCATATGc         >  2:1263225/1‑140 (MQ=255)

                                                                                                                                   cATAGGTTTATCAACGAGAT‑ACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAAc  <  1:613396/140‑1 (MQ=255)

AGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGAT‑A‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAAC  >  NZ_CP025268/2790616‑2790885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATA‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAG  >  NZ_CP025268/2790618‑2790900

catccttcgtcattagttttttcaagcagaagacggcatacgagatctgcgcatgtctcgtgggctcggagatgtgtataagagacagGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATA‑C                                                                                                                                      <  SRR14920166.2412824/63‑1 (MQ=60)

  AAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATAcaa                                                                                                                                     <  SRR14920166.4158918/151‑4 (MQ=60)

    AGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATG                                                                                                                                   <  SRR14920166.2894940/151‑1 (MQ=60)

    AGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATG                                                                                                                                   <  SRR14920166.2894882/151‑1 (MQ=60)

       TATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATT                                                                                                                                >  SRR14920166.1014020/1‑151 (MQ=60)

              GATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAG                                                                                                                         >  SRR14920166.1932123/1‑151 (MQ=60)

                 CTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTG                                                                                                                      >  SRR14920166.3636231/1‑151 (MQ=60)

                   GTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGAT                                                                                                                    >  SRR14920166.724554/1‑151 (MQ=60)

                    TTAAAAAACGATTATAGAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATA                                                                                                                   <  SRR14920166.4161379/151‑1 (MQ=60)

                      AAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAAC                                                                                                                 <  SRR14920166.3216158/151‑1 (MQ=60)

                           ACGATTATAAAATTTCCCGTTCTCCAGATACAACTTACCGAGAGTTAAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGG                                                                                                            <  SRR14920166.1994904/151‑1 (MQ=60)

                                   AAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAACAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATC                                                                                                    <  SRR14920166.1973527/151‑1 (MQ=60)

                                           CCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGT                                                                                            <  SRR14920166.5023751/151‑1 (MQ=60)

                                           CCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGT                                                                                            <  SRR14920166.1672898/151‑1 (MQ=60)

                                           CCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGT                                                                                            <  SRR14920166.3786823/151‑1 (MQ=60)

                                           CCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGT                                                                                            <  SRR14920166.5024088/151‑1 (MQ=60)

                                           CCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGT                                                                                            <  SRR14920166.396794/151‑1 (MQ=60)

                                           CCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGT                                                                                            <  SRR14920166.396780/151‑1 (MQ=60)

                                                 TCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCT                                                                                      >  SRR14920166.1890545/1‑151 (MQ=60)

                                                 TCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCT                                                                                      >  SRR14920166.1890544/1‑151 (MQ=60)

                                                  taagagacagCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTG                                                                                     <  SRR14920166.2266143/141‑1 (MQ=60)

                                                    AGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAA                                                                                   >  SRR14920166.4556717/1‑151 (MQ=60)

                                                    AGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAA                                                                                   >  SRR14920166.866405/1‑151 (MQ=60)

                                                    AGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAA                                                                                   >  SRR14920166.4560891/1‑151 (MQ=60)

                                                    AGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAA                                                                                   >  SRR14920166.3763738/1‑151 (MQ=60)

                                                    AGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAA                                                                                   >  SRR14920166.3538519/1‑151 (MQ=60)

                                                    AGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGATTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAA                                                                                   >  SRR14920166.4181110/1‑151 (MQ=60)

                                                         CAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTT                                                                              >  SRR14920166.4506259/1‑151 (MQ=60)

                                                          AACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTC                                                                             <  SRR14920166.2266329/151‑1 (MQ=60)

                                                            CTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAC                                                                           >  SRR14920166.2818610/1‑151 (MQ=60)

                                                             TTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACC                                                                          <  SRR14920166.2456270/151‑1 (MQ=60)

                                                                    GAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTA                                                                   >  SRR14920166.3626195/1‑151 (MQ=60)

                                                                        tgtgtataagagacagGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATC                                                               <  SRR14920166.134044/135‑1 (MQ=60)

                                                                        TGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATC                                                               <  SRR14920166.3099122/151‑1 (MQ=60)

                                                                        TGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATC                                                               <  SRR14920166.2942046/151‑1 (MQ=60)

                                                                        TGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATC                                                               <  SRR14920166.1626701/151‑1 (MQ=60)

                                                                         GAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCT                                                              >  SRR14920166.165590/1‑151 (MQ=60)

                                                                         GAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCT                                                              >  SRR14920166.4905829/1‑151 (MQ=60)

                                                                              AAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAA                                                         >  SRR14920166.4072112/1‑151 (MQ=60)

                                                                              AAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAA                                                         >  SRR14920166.3925390/1‑151 (MQ=60)

                                                                              AAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAA                                                         >  SRR14920166.1982404/1‑151 (MQ=60)

                                                                              AAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAA                                                         >  SRR14920166.1086980/1‑151 (MQ=60)

                                                                              AAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAA                                                         >  SRR14920166.3642951/1‑151 (MQ=60)

                                                                              AAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAA                                                         >  SRR14920166.4723218/1‑151 (MQ=60)

                                                                                GCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGGTTATCAGTAAGAACGTGCGTAACATTACACCAACATTATAGCTGACAAAC                                                       >  SRR14920166.43009/1‑151 (MQ=60)

                                                                                   GCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTT                                                    >  SRR14920166.1736242/1‑151 (MQ=60)

                                                                                        GCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCA                                               >  SRR14920166.1357273/1‑151 (MQ=60)

                                                                                        GCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCA                                               >  SRR14920166.1918000/1‑151 (MQ=60)

                                                                                        GCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCA                                               >  SRR14920166.1918326/1‑151 (MQ=60)

                                                                                        GCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCA                                               >  SRR14920166.2295277/1‑151 (MQ=60)

                                                                                        GCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCA                                               >  SRR14920166.2215329/1‑151 (MQ=60)

                                                                                        GCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCA                                               >  SRR14920166.2215153/1‑151 (MQ=60)

                                                                                        GCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCA                                               >  SRR14920166.2189981/1‑151 (MQ=60)

                                                                                           TCGCATTACAGCGACAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATCACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAA                                            <  SRR14920166.880157/151‑1 (MQ=60)

                                                                                           TAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAA                                            >  SRR14920166.556350/1‑151 (MQ=60)

                                                                                             GCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGA                                          >  SRR14920166.2740857/1‑151 (MQ=60)

                                                                                             GCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGA                                          >  SRR14920166.5006869/1‑151 (MQ=60)

                                                                                                   CAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATA                                    <  SRR14920166.1903269/151‑1 (MQ=60)

                                                                                                   CAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATA                                    <  SRR14920166.4219236/151‑1 (MQ=60)

                                                                                                    AGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATAT                                   <  SRR14920166.3456059/151‑1 (MQ=60)

                                                                                                    AGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATAT                                   <  SRR14920166.4277815/151‑1 (MQ=60)

                                                                                                     GCGCCGGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATG                                  >  SRR14920166.2373673/1‑151 (MQ=60)

                                                                                                     GCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATG                                  >  SRR14920166.2373588/1‑151 (MQ=60)

                                                                                                     GCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATG                                  >  SRR14920166.2373674/1‑151 (MQ=60)

                                                                                                      CGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGT                                 <  SRR14920166.180662/151‑1 (MQ=60)

                                                                                                      CGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGT                                 <  SRR14920166.5028860/151‑1 (MQ=60)

                                                                                                         CAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGC                              <  SRR14920166.1005538/151‑1 (MQ=60)

                                                                                                         CAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGC                              <  SRR14920166.1005412/151‑1 (MQ=60)

                                                                                                            ACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATctggctct                           >  SRR14920166.2896575/1‑143 (MQ=60)

                                                                                                               GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920166.1671471/1‑151 (MQ=60)

                                                                                                               GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920166.2998052/1‑151 (MQ=60)

                                                                                                               GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920166.2394803/1‑151 (MQ=60)

                                                                                                               GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920166.2783426/1‑151 (MQ=60)

                                                                                                               GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGGTGCATATGC                        >  SRR14920166.4608361/1‑151 (MQ=60)

                                                                                                               GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTGCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920166.1671244/1‑151 (MQ=60)

                                                                                                                GATAGGAGAAAGAAAAAAATAGGTTTATAAAAGAGATACATTGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATTTCTGAAAAACCTTCCCCAAAAGATAAATATGTTGCATATGCT                       <  SRR14920166.3111022/151‑1 (MQ=60)

                                                                                                                       GAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACA                <  SRR14920166.3867245/151‑1 (MQ=60)

                                                                                                                           GAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCC            >  SRR14920166.4579358/1‑151 (MQ=60)

                                                                                                                              AAACATAGGTTTATCAACGAGATACAATGCTTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATCTGTTGCCTATGCTATTAACATTCCTGA         >  SRR14920166.303693/1‑151 (MQ=60)

                                                                                                                              AAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAACAGATAAATATGTTGCATATGCTATTAACATTCCTGA         >  SRR14920166.5038164/1‑151 (MQ=60)

                                                                                                                                ACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACT       <  SRR14920166.764066/151‑1 (MQ=60)

                                                                                                                                 CATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTA      <  SRR14920166.614777/151‑1 (MQ=60)

                                                                                                                                  ATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTAT     <  SRR14920166.2737683/151‑1 (MQ=60)

                                                                                                                                     GGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCGCCCACATTATATCTAACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAG  >  SRR14920166.2820862/1‑151 (MQ=60)

                                                                                                                                     GGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAG  >  SRR14920166.2189257/1‑151 (MQ=60)

AAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATA‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAG  >  NZ_CP025268/2790618‑2790900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`