Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
258 |
497.4 |
21541912 |
99.2% |
21369576 |
151.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_008463 |
2,707,727 |
N→G |
?75P (CNT→CCT) |
PA14_RS12740 ← |
DUF2285 domain‑containing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_008463 | 2,707,727 | 0 | N | G | 99.7%
| 1234.5
/ NA
| 314 | ?75P (CNT→CCT) | PA14_RS12740 | DUF2285 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base N (0/0); major base G (155/157); minor base T (0/1); total (155/159) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 319 total aligned reads displayed.
GGCAGCAGCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCANGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAGCCAGC > NC_008463/2707578‑2707876
|
ggcagCAGCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAgg < 2:1231669/151‑1 (MQ=255)
cagcagCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGa < 2:3769819/151‑1 (MQ=255)
cagcagCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGAGAGAGCTGCACCACGGCATCGTGGTCAGGGa > 2:5069091/1‑151 (MQ=255)
gcagcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAAc < 2:2929911/151‑1 (MQ=255)
gcagcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAAc < 1:6202590/151‑1 (MQ=255)
gcagcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAAc < 2:9630710/151‑1 (MQ=255)
agcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCa < 1:4603005/151‑1 (MQ=255)
agcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCa < 1:1262323/151‑1 (MQ=255)
ggCCACTGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCg < 2:9076959/151‑1 (MQ=255)
ggCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCg > 1:2372156/1‑151 (MQ=255)
cAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCATGCCGG‑At < 2:5667259/151‑1 (MQ=255)
aaTGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATg > 1:10179244/1‑151 (MQ=255)
aTGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATgc < 2:6111105/151‑1 (MQ=255)
aTGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATgc < 2:1806302/151‑1 (MQ=255)
cGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGcgcg < 2:3641270/151‑1 (MQ=255)
acacCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCGTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTc < 2:8240620/151‑1 (MQ=255)
cagcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTcgcgc > 2:10455276/1‑151 (MQ=255)
agcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTcgcgcg > 1:7159932/1‑151 (MQ=255)
gcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCgcgcgc > 1:7643620/1‑151 (MQ=255)
cagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATcc > 1:7476244/1‑151 (MQ=255)
cagGCGCTTGCCGTCGTGGATCAGGTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATcc < 2:2748486/151‑1 (MQ=255)
ggCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCaa < 1:7113226/151‑1 (MQ=255)
gcgcTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAg < 2:231008/151‑1 (MQ=255)
gcgcTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAg < 2:5421496/151‑1 (MQ=255)
cgcTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAgg > 1:6570732/1‑151 (MQ=255)
gcTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGc < 2:4187083/151‑1 (MQ=255)
cTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCt > 2:1015958/1‑151 (MQ=255)
cTTGCCGTCGTGGATCAGGTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCt < 2:257562/151‑1 (MQ=255)
cTTGCCGTCGTGGATCAGGTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGAGAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCt < 1:1616266/151‑1 (MQ=255)
ttGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTg < 2:7708838/151‑1 (MQ=255)
ttGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTg > 1:2763431/1‑151 (MQ=255)
tGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCGTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCCTCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTgg > 1:8475110/1‑151 (MQ=255)
gCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGACCCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTggg > 2:10675132/1‑151 (MQ=255)
gCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTggg > 2:4738163/1‑151 (MQ=255)
gtcgtGGATCTGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCt < 1:9373163/151‑1 (MQ=255)
gtcgtGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGGGGCGGGTCGGCGTCGGGATCGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCt < 2:4003396/151‑1 (MQ=255)
gtGGATCAGTTGCTTGCGGCCGGGCACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTcc < 1:4157997/151‑1 (MQ=255)
tGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCca < 2:1678919/151‑1 (MQ=255)
ggATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCcag > 1:5152094/1‑151 (MQ=255)
gATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCcagc < 1:9689006/151‑1 (MQ=255)
aTCAGGTGCTTGCGGCCGGTCACGCGCCAGAACTCGAAGGCATGGGCTTCGGGGGGCGGGTCGGCGTCGGGATAGAGCGGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCcagca < 1:9868471/151‑1 (MQ=255)
ttgcttgcGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcaggcgc > 1:8041499/1‑151 (MQ=255)
gcttgcGGCCGGGACCGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcaggcgcag < 1:235548/151‑1 (MQ=255)
tgcGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGACCCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCt > 1:7994557/1‑151 (MQ=255)
tgcGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCt > 1:578279/1‑151 (MQ=255)
gcGGCCGGGAACGCGCCAGAACTCGAAGGCAAGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTc < 2:10211167/151‑1 (MQ=255)
ggCCGGGAACGCGCCAGACCTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCa < 1:3734076/151‑1 (MQ=255)
ggCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGACCCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCa > 2:8135887/1‑151 (MQ=255)
ggCCGGGAACGCGCCAGAACTCGAAGGCATGGCCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGACCCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCa < 1:4420925/151‑1 (MQ=255)
cGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGc > 1:4456181/1‑151 (MQ=255)
gggAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑TTGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGcc < 1:4207665/151‑1 (MQ=255)
gAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTg > 1:2418013/1‑151 (MQ=255)
gAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTg > 1:10578913/1‑151 (MQ=255)
aCGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTgcg < 1:704862/151‑1 (MQ=255)
aCGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTgcg > 2:3451048/1‑151 (MQ=255)
cgcgCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTgcgc < 1:10401766/151‑1 (MQ=255)
cgcgCCAGAACTCGAAGGCATGGGCTTCGGGGGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTgcgc < 1:9123377/151‑1 (MQ=255)
gcgcCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGcgcc < 2:981368/151‑1 (MQ=255)
cgcCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGcgccg < 1:3436699/151‑1 (MQ=255)
cAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGt > 1:1339653/1‑151 (MQ=255)
aGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATCGCGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGtt < 1:1474945/151‑2 (MQ=255)
aGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTc > 2:5180516/1‑151 (MQ=255)
gAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAg > 1:4830070/1‑151 (MQ=255)
aaGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAgc > 1:5468486/1‑151 (MQ=255)
aaGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAgc > 1:6600265/1‑151 (MQ=255)
gCATGGGCTTGGGGTGGCGGGTGGGCGGCGGGATCGAGCTGCACCACGCAATCGTGGTCTGGTAACCAGGCCGG‑ATGCGGGTGGCCCGCTTCCACGGGTGGTTATACCAGCAGGCGCAGGCCCAAAGCCTGCGCCGCGTCCGGCCAgcggc < 2:512522/151‑1 (MQ=255)
cATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAgcggcg > 1:6905527/1‑151 (MQ=255)
cATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAgcggcg > 2:8775995/1‑151 (MQ=255)
cATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAgcggcg > 1:7945257/1‑151 (MQ=255)
aTGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGa > 2:8063671/1‑151 (MQ=255)
gggCTTGGGGTGGGGGGTGGGCTTCGGTATAGCGCGGCACCCCGGCATCGGGGTCTGGGCCCCAGGCCGT‑TTGCGCGTCGCGGGCATCAATGGGGGTGTCTTCCCGCTGGCGCAGTCCCCACGCCTCCGCCGCGTCCGGCCAGCGGCGACg < 2:150773/151‑1 (MQ=255)
ggctgggggTGGGGGGGGGGCGTCGGGATAGCGCTCCCCCCCGGCTTCGTGGTC‑TGGCACCCCGCCGGTTTGCGCGTCGCCCCCAACCACGGCTGGTTCTTCCAGCCGGCGCTGGCTCCACGCCTGCGCCGCGTCCGGCCAGCGGCGACgg < 2:2120775/145‑1 (MQ=255)
cTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGgcg > 1:10001113/1‑151 (MQ=255)
ttCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGgcgc > 2:6616752/1‑151 (MQ=255)
gggggggggTCGGCGGGGGGTTTGTGCTGCACCCCCGCTTCGGGGTCTGGGACCCTGGCCGT‑TTGGGCTTCGCGCGCACCAATGGCTGGGTCTTCCAGCAGGCGCTGTCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGcc < 2:4995399/145‑1 (MQ=255)
gTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGccc > 1:8792730/1‑150 (MQ=255)
gTGGCGGGTCGGCGGCGGGATAGAGCTCCCCCCCGGCATCGTGGTCAGGGACCCCGGCCGG‑ATGCGCGTCGCGCCCAACCAAGGCTGGGTCTTCCCGCCGGCGCAGGCTCCACGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCa < 2:8905733/151‑1 (MQ=255)
cGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTcg > 2:31435/1‑151 (MQ=255)
tCGGGGTCGGGATAGAGCTGCACCCCGGCATCGTGGTCAGGTAACCAGGCCGG‑ATGCGCGACGCGCGAATCCACGGCTGGTTCTCCCAGCTGGCGCTGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCgcggc < 2:3367271/151‑1 (MQ=255)
tCGGCGTCGGGATAGAGCTGCCCCACGGCACCGTGGTCCGGGACCCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCCGGCGCAGGCTCCACGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCgcggc < 2:6270715/151‑1 (MQ=255)
cGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCgcggcg > 1:6729091/1‑151 (MQ=255)
cGGCGCCGGGATACAGCTGCCCCACGCCAGCGGGGTCTGGGACCCCCGCCGC‑AGGCGCGGCGCGCGCATCCACGGCTGGGTCTACCACCTGGCGCAGCCACCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCgcggcg < 2:6754597/151‑1 (MQ=255)
cGTCGGGTTAGAGCTGCACCACGGCATGGGGGTCCGGGAACCCGGCCGT‑ATGCGCGTCGCGCGCATCAATGGCTGGGTATTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTa < 2:8707498/151‑1 (MQ=255)
cGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTa > 1:2977452/1‑151 (MQ=255)
cGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATc > 2:4577493/1‑151 (MQ=255)
cGGGATAGAGCTCCACCCCGGCATCGTGGTCCGGCACCCCGGCCGG‑TGGCGCGTCGCGCGCAACCAAGGCGGGGTCTTCCCGCCGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATc < 2:8404653/151‑1 (MQ=255)
gtaTAGCGCCGCCCCCCGCCATCGGGGTCTGCGACCCCGCCCGG‑TGGCGCGTCGCGCGCAGCCACGGCGGGTTCTCCCAGCTGGCGCAGGCACCACCCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCgg < 2:9934572/149‑1 (MQ=255)
gATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCggg > 1:9042646/1‑151 (MQ=255)
tAGCGCTGCCCCCCGGCATCGGGGTCTGGGAACCCGGCCGG‑AGGCGCGTCGCGCGAATCCATGGCGGGGTCTTCCCGCAGGCGCCGGCTCCACGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGAt < 2:2372156/151‑1 (MQ=255)
tAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCTGGCTCCAAGCCTGCGCCTCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGAt > 2:4480709/1‑151 (MQ=255)
tAGAGCTGCACCACGGCATCGTGGGCCGGGACCCCGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCGGGGTCTTCCAGCCGGCGCAGGCTCCCAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGAt < 2:8554443/151‑1 (MQ=255)
agCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTcc > 1:9280269/1‑151 (MQ=255)
gcggCACCACGGCTTCGTGGTCAGGGACCCTGGCCGG‑TTGCGCGTCGCGCGCATCCATGGCTGGGTCTTCCAGCAGGCGCAGGCACCAAGCCGGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCt < 2:9328566/148‑1 (MQ=255)
ccacGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAg > 1:2086885/1‑151 (MQ=255)
cacGGCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAgg > 1:10713724/1‑151 (MQ=255)
ggCATCGTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTAt > 1:10130702/1‑151 (MQ=255)
cATCGGGGTCTGGGACCCAGGCCGG‑TGGCGCGTCGCGCCCAACCACGGCTGGTTCTACCAGCAGGCGCTGGCACCAAGCGGGCCCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTc < 1:6975393/151‑1 (MQ=255)
tCGGGGTCAGGTAACCGGGCCGG‑ATGCGCGGCGCGCGCAGCCACGGCTGGGTCTCCCAGCCGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTccc < 2:7511697/151‑1 (MQ=255)
gTGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCaa > 2:10015790/1‑151 (MQ=255)
tGGTCAGGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAg > 1:6103124/1‑151 (MQ=255)
|
GGCAGCAGCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCANGGAACCAGGCCGG‑ATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAGCCAGC > NC_008463/2707578‑2707876
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
