Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
275 |
500.0 |
21685688 |
99.2% |
21512202 |
151.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_008463 |
6,205,906 |
Δ1 bp |
intergenic (‑11/+186) |
PA14_RS28345 ← / ← PA14_RS28350 |
type VI secretion system tip protein VgrG/Hcp family type VI secretion system effector |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_008463 | 6,205,903 | 0 | C | . | 99.7%
| 447.6
/ ‑2.5
| 287 | intergenic (‑8/+189) | PA14_RS28345/PA14_RS28350 | type VI secretion system tip protein VgrG/Hcp family type VI secretion system effector |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (154/132); minor base G (0/1); total (154/133) |
| Fisher's exact test for biased strand distribution p-value = 4.63e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 306 total aligned reads displayed.
ACGGGGCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTCCCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTT > NC_008463/6205753‑6206019
|
cGGGGCGTTCGCCGACCAGCTCCATGTCGAAGTCGAACGTCTGTCTGATGGATTCGCGGCCGCTGAAGGATAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTcc < 2:3578444/151‑1 (MQ=11)
ggggCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTccc < 2:5235907/151‑1 (MQ=31)
ggggAGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGCCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGTCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTccc > 2:8891682/1‑151 (MQ=9)
gggCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTccct > 1:4342213/1‑150 (MQ=14)
gggCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGAGGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGTGGCTGATATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTccct > 2:6619850/1‑150 (MQ=9)
ggCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTccctc < 2:1581157/151‑3 (MQ=11)
gCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTccctca < 2:7503270/151‑4 (MQ=1)
ggTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattc < 1:352719/151‑1 (MQ=11)
gTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcg < 1:6471676/151‑1 (MQ=11)
tCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcga < 1:1320839/151‑1 (MQ=11)
gAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattggatt < 2:206182/151‑1 (MQ=2)
aaGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGTGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTg > 2:1148103/1‑151 (MQ=2)
aGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGt < 2:4449257/151‑1 (MQ=11)
aGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGt < 1:2766427/151‑1 (MQ=11)
cGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcct < 2:7239241/151‑1 (MQ=11)
cGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcct > 2:408214/1‑151 (MQ=11)
aaCGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcctgc < 1:10722857/151‑1 (MQ=11)
aaCGGCTGGCTGATGGCGTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcctgc < 1:5418185/151‑1 (MQ=2)
cGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcctgcct < 1:10777516/151‑1 (MQ=11)
ggctggctGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcctgcctg < 2:10303810/151‑1 (MQ=11)
ggctggctGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcctgcctg < 1:420463/151‑1 (MQ=11)
gctggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTgg > 1:2624562/1‑151 (MQ=11)
gctggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTgg > 1:4538169/1‑151 (MQ=11)
ctggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTCCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGGTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGgc > 2:9261686/1‑151 (MQ=2)
tggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGgcg > 1:9398439/1‑151 (MQ=11)
tggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGgcg > 2:6930205/1‑151 (MQ=11)
tggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGgcg < 1:6005910/151‑1 (MQ=11)
tggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGgcg > 1:4109825/1‑151 (MQ=11)
ggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGgcgc > 1:186737/1‑151 (MQ=11)
gctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGcgcg < 2:6081792/151‑1 (MQ=11)
tgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCggg > 1:9735660/1‑151 (MQ=11)
aTGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGTGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCg > 1:6674130/1‑151 (MQ=2)
aTGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCg > 1:6300825/1‑151 (MQ=11)
aTGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCg > 1:10121370/1‑151 (MQ=11)
ggCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCgag > 1:7202676/1‑151 (MQ=11)
gCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCgaga < 1:10094727/151‑1 (MQ=11)
ttCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACa > 1:9498783/1‑151 (MQ=11)
ttCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACa > 2:2178209/1‑151 (MQ=11)
tCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACaa < 1:8123668/151‑1 (MQ=11)
tCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCAGCCTGGCGCGGGCGAGACaa > 1:7775535/1‑151 (MQ=2)
cgcgGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAg > 2:5840982/1‑151 (MQ=11)
cgcgGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAg < 1:5828725/151‑1 (MQ=11)
cgcgGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAg < 1:3874728/151‑1 (MQ=11)
gcgGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAgg > 2:8969035/1‑151 (MQ=11)
cgGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAggg < 1:7933505/151‑1 (MQ=11)
ggCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgc < 1:8910909/151‑1 (MQ=11)
ggCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgc > 1:6185378/1‑151 (MQ=11)
ggCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgc > 2:10209362/1‑151 (MQ=11)
gCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgcg < 2:8571294/151‑1 (MQ=11)
ccGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgcgc < 2:3922360/151‑1 (MQ=11)
cGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgcgcg > 2:9779274/1‑151 (MQ=11)
cggAAGGAGAGCACATGCAGGGCCAGGGCGATGCCGTCGAAGGCGAGGCTGAAAAGGGTCTGGTTGGCAGCTGCGAACATCCGTTGT‑CCCTAACTGGCGAAGGCGACCTATACGATAGACCTGCCTGGCGCGGGCGAGACACgcgcgcgcc > 2:1851913/3‑150 (MQ=11)
cTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAAGGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCa > 2:6702890/1‑151 (MQ=2)
tGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAg > 1:10354743/1‑151 (MQ=11)
tGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAg > 1:1649434/1‑151 (MQ=11)
gAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAgg > 1:7647784/1‑151 (MQ=11)
gAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAgg < 2:286931/151‑1 (MQ=11)
aGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCt < 2:5796958/151‑1 (MQ=11)
ggAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTc < 1:5098611/151‑1 (MQ=11)
gagaGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCg < 2:7655453/151‑1 (MQ=11)
gCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCg > 2:9320797/1‑151 (MQ=11)
aCCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGa < 2:10722445/151‑1 (MQ=11)
ccTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGaa > 1:10030707/1‑151 (MQ=11)
ccTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGaa < 2:9378359/151‑1 (MQ=11)
cTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAg < 2:4864892/151‑1 (MQ=11)
cTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAg < 1:1100441/151‑1 (MQ=11)
tGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGc < 1:7095391/151‑1 (MQ=11)
gCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCt > 2:83416/1‑151 (MQ=11)
gCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCt < 1:10458660/151‑1 (MQ=11)
cAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTg > 1:4658356/1‑151 (MQ=11)
cAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTg > 2:10613518/1‑151 (MQ=11)
cAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGGTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTg > 2:7833762/1‑151 (MQ=2)
ggTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGcc < 2:4437708/151‑1 (MQ=11)
gAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGACCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTaca > 2:4281422/1‑151 (MQ=2)
gggCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTacaac > 2:3265379/1‑151 (MQ=11)
ggCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTacaaca < 1:5909191/151‑1 (MQ=11)
gCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTAcaacaa > 2:652840/1‑151 (MQ=11)
cGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACaaa < 2:5704952/151‑1 (MQ=11)
gAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCTGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAg > 2:5006408/1‑151 (MQ=2)
gAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCAGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCGGCCTACAACAAAg > 2:5640961/1‑151 (MQ=2)
ggCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCg < 2:10407029/151‑1 (MQ=11)
ggCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCg < 1:700904/151‑1 (MQ=11)
cGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCa > 1:2195230/1‑151 (MQ=11)
gTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCAt > 1:5642118/1‑151 (MQ=11)
gTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCAt > 2:2680056/1‑151 (MQ=11)
tCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATc > 2:5177668/1‑151 (MQ=11)
gATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGa > 2:9592115/1‑151 (MQ=11)
aTGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGAc > 2:4550895/1‑151 (MQ=11)
tGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGAcc > 1:9710377/1‑151 (MQ=11)
ggCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGAccc > 2:840075/1‑151 (MQ=11)
ggCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGAccc > 1:9096226/1‑151 (MQ=11)
gCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCg < 1:4791277/151‑1 (MQ=11)
cGAGGCTGAAAGGGGGCGGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCCCTGGCGCAGGCGACGGATTCGATTGGCCTGCCTGGCGCGGGCGGGCCATGGGCGCGCGGGCGCGAGCGGAAGCTGCCTCCAACAAGGCGGCAGCGCCCCgg > 2:2454340/1‑151 (MQ=11)
ggCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAATGCGGCATCGACCCGgcgc > 1:8790599/1‑151 (MQ=2)
gCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGcgcg > 1:9644468/1‑151 (MQ=11)
tGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCggg < 1:7709047/151‑1 (MQ=11)
gAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGc < 2:6231741/151‑1 (MQ=11)
aaaTGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCt > 2:8788501/1‑151 (MQ=11)
aaTGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCtt < 1:6836485/151‑1 (MQ=1)
aaTGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCtt > 1:1007013/1‑151 (MQ=1)
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ACGGGGCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTCCCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTT > NC_008463/6205753‑6206019
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
