Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
155 |
25.8 |
2285122 |
88.0% |
2010907 |
104.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
3,998,635 |
+C |
intergenic (‑221/+527) |
h16_A3705 ← / ← h16_A3706 |
transcriptional regulator, LysR‑family/conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 3,998,633 | 1 | . | C | 100.0%
| 159.7
/ NA
| 41 | intergenic (‑219/+529) | h16_A3705/h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (21/20); total (21/20) |
TTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGC > AM260479/3998503‑3998759
|
tttattGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑ccc > 2:1097099/1‑133 (MQ=255)
aaaTGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCAc > 2:1001823/1‑134 (MQ=255)
aTGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCAccc > 1:63652/1‑134 (MQ=255)
aTGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCAccc < 2:612952/134‑1 (MQ=255)
ccTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTcg > 2:874718/1‑134 (MQ=255)
cTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑ccctg < 2:570822/114‑4 (MQ=255)
cTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑ccctg > 1:570822/1‑111 (MQ=255)
aTCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCg > 2:32842/1‑134 (MQ=255)
aTCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCg > 1:426369/1‑134 (MQ=255)
tCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCa > 1:1084949/1‑113 (MQ=255)
tCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCa < 2:1084949/113‑1 (MQ=255)
tGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCa > 1:96611/1‑134 (MQ=255)
cGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCg < 2:96611/134‑1 (MQ=255)
aTGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCt < 2:63652/134‑1 (MQ=255)
aaCATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGc < 1:1097099/134‑1 (MQ=255)
gTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGaa < 1:1001823/134‑1 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGtt < 1:32842/133‑1 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTc > 2:845265/1‑134 (MQ=255)
cTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCa < 2:977944/134‑1 (MQ=255)
cTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCa > 1:255873/1‑134 (MQ=255)
cAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACg < 1:287087/126‑1 (MQ=255)
cAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACg > 2:287087/1‑126 (MQ=255)
cAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAg > 2:321319/1‑134 (MQ=255)
tAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAgg > 2:1034152/1‑132 (MQ=255)
gaAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGcc > 2:743800/1‑133 (MQ=255)
aaaGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCaa < 2:512535/134‑1 (MQ=255)
aaGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAg < 1:1034152/134‑1 (MQ=255)
aaGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAg > 2:175586/1‑134 (MQ=255)
aGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAg > 1:60719/1‑97 (MQ=255)
aGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAg < 2:60719/97‑1 (MQ=255)
ccTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCaa < 2:643046/130‑1 (MQ=255)
ccTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCaa > 1:643046/1‑130 (MQ=255)
ccTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTc < 1:874718/134‑1 (MQ=255)
cTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGAc > 2:869561/1‑112 (MQ=255)
cTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGAc < 1:869561/112‑1 (MQ=255)
tCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCg < 1:321319/134‑1 (MQ=255)
cATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGc < 2:503304/60‑1 (MQ=255)
cATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGc > 1:503304/1‑60 (MQ=255)
cATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCg > 2:196688/1‑133 (MQ=255)
aTGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGcc < 1:607074/75‑1 (MQ=255)
aTGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGcc > 2:607074/1‑75 (MQ=255)
cGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGgcgc < 2:426369/134‑1 (MQ=255)
cTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGtt < 1:412212/111‑1 (MQ=255)
cTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGtt > 2:412212/1‑111 (MQ=255)
|
TTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGC > AM260479/3998503‑3998759
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTTCGATC > AM260479/3998506‑3998779
|
ATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCT > GWNJ‑0478:712:GW2002102894th:2:1104:17321:4884/1‑150 (MQ=60)
ATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTgtct > GWNJ‑0478:712:GW2002102894th:2:1216:12435:81863/1‑146 (MQ=60)
GCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGG > GWNJ‑0478:712:GW2002102894th:2:1209:6708:57479/1‑150 (MQ=60)
CCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCctgtctc > GWNJ‑0478:712:GW2002102894th:2:2214:18095:20796/1‑143 (MQ=60)
TATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCAC > GWNJ‑0478:712:GW2002102894th:2:1107:14757:99966/1‑150 (MQ=60)
CAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTT < GWNJ‑0478:712:GW2002102894th:2:2214:7041:81033/150‑1 (MQ=60)
gattagcgagtgtctcgtgggctcggagatgtgtataagagacagGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTC < GWNJ‑0478:712:GW2002102894th:2:2102:13087:17385/105‑1 (MQ=60)
AGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGT < GWNJ‑0478:712:GW2002102894th:2:2208:6378:85823/150‑1 (MQ=60)
TCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCAC > GWNJ‑0478:712:GW2002102894th:2:1114:12376:55529/1‑150 (MQ=60)
CGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGA < GWNJ‑0478:712:GW2002102894th:2:1105:3756:11193/149‑1 (MQ=60)
agagacagTGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCC < GWNJ‑0478:712:GW2002102894th:2:2201:1674:95574/142‑1 (MQ=60)
GCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCA < GWNJ‑0478:712:GW2002102894th:2:1201:9610:30517/150‑1 (MQ=60)
TCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaac > GWNJ‑0478:712:GW2002102894th:2:2215:5169:62209/1‑67 (MQ=60)
CCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCctgtctcttatacacatctccg > GWNJ‑0478:712:GW2002102894th:2:1102:18660:85485/1‑127 (MQ=60)
ATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCG > GWNJ‑0478:712:GW2002102894th:2:2104:19319:43384/1‑150 (MQ=60)
gagtgtctcgtgggctcggagatgtgtataagagacaggcCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATC < GWNJ‑0478:712:GW2002102894th:2:2207:10607:43322/110‑1 (MQ=60)
CAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCctgatcctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaataaccaacgagaagaatgacg > GWNJ‑0478:712:GW2002102894th:2:1210:19888:28662/1‑41 (MQ=60)
AGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttc > GWNJ‑0478:712:GW2002102894th:2:1212:14260:52000/1‑91 (MQ=60)
AAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACC < GWNJ‑0478:712:GW2002102894th:2:2210:3655:60071/150‑1 (MQ=60)
aagagacagCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGA < GWNJ‑0478:712:GW2002102894th:2:1208:8991:80691/141‑1 (MQ=60)
GCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGAC < GWNJ‑0478:712:GW2002102894th:2:2203:14845:28742/150‑1 (MQ=60)
ATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCC < GWNJ‑0478:712:GW2002102894th:2:1202:10600:47491/150‑1 (MQ=60)
AACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCtgtctcttatacacatc > GWNJ‑0478:712:GW2002102894th:2:1206:16870:66708/1‑133 (MQ=60)
agagacagcCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTT < GWNJ‑0478:712:GW2002102894th:2:1206:14852:60588/141‑1 (MQ=60)
ACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTTCGATC < GWNJ‑0478:712:GW2002102894th:2:1110:1902:42789/150‑1 (MQ=60)
|
ATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTTCGATC > AM260479/3998506‑3998779
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
