Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
155 |
25.8 |
2285122 |
88.0% |
2010907 |
104.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
2,256,779 |
G→A |
P94S (CCG→TCG) |
h16_B1998 ← |
transcriptional regulator, XRE‑family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 2,256,779 | 0 | G | A | 100.0%
| 175.7
/ NA
| 47 | P94S (CCG→TCG) | h16_B1998 | transcriptional regulator, XRE‑family |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/23); total (24/23) |
TGGCTGGTCTTGTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGGAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCGTACCGATGGTCGGCGACGACAGGCCG > AM260480/2256657‑2256909
|
tGGCTGGTCTTGTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCcg > 2:1025141/1‑134 (MQ=255)
tgCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACca < 1:53075/134‑1 (MQ=255)
aGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCgg > 2:399443/1‑114 (MQ=255)
aGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCgg < 1:399443/114‑1 (MQ=255)
aGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGAc < 1:169657/128‑1 (MQ=255)
aGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGAc > 2:169657/1‑128 (MQ=255)
aGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACcagcag > 1:998599/1‑134 (MQ=255)
aGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACca > 2:92522/1‑130 (MQ=255)
aGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACca < 1:92522/130‑1 (MQ=255)
tGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCgg > 2:638533/1‑110 (MQ=255)
tGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCgg < 1:638533/110‑1 (MQ=255)
gcggcACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTg > 1:511626/1‑134 (MQ=255)
ggcACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCgg < 2:796786/102‑1 (MQ=255)
ggcACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCgg > 1:796786/1‑102 (MQ=255)
aGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTg > 2:363309/1‑134 (MQ=255)
gCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGa > 2:585705/1‑96 (MQ=255)
gCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGa < 1:585705/96‑1 (MQ=255)
cACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTgg < 2:823551/127‑1 (MQ=255)
cACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTgg > 1:823551/1‑127 (MQ=255)
cGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGa < 1:1025141/134‑1 (MQ=255)
tGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACca < 1:4129/75‑1 (MQ=255)
tGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACca > 2:4129/1‑75 (MQ=255)
tGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAgg < 2:998599/134‑1 (MQ=255)
ggCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCgg < 1:366831/58‑1 (MQ=255)
ggCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCgg > 2:366831/1‑58 (MQ=255)
ggCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAggg > 1:448044/1‑134 (MQ=255)
ggCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAgg > 2:618788/1‑133 (MQ=255)
ggCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAgg < 1:618788/133‑1 (MQ=255)
aTGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTc < 1:363309/134‑1 (MQ=255)
aTGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTc < 2:448044/134‑1 (MQ=255)
tGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACca < 1:1052488/69‑1 (MQ=255)
tGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACca > 2:1052488/1‑69 (MQ=255)
ttCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGc < 2:288574/96‑1 (MQ=255)
ttCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGc > 1:288574/1‑96 (MQ=255)
cGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTTACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGc > 2:996944/1‑134 (MQ=255)
cGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTc < 2:977873/127‑1 (MQ=255)
cGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTc > 1:977873/1‑127 (MQ=255)
gCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCg > 2:1084057/1‑134 (MQ=255)
cccTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCGt < 2:511626/134‑1 (MQ=255)
cTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGa < 2:402702/41‑1 (MQ=255)
cTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGa > 1:402702/1‑41 (MQ=255)
cTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGc > 2:502490/1‑67 (MQ=255)
cTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGc < 1:502490/67‑1 (MQ=255)
cTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCGTACCGATgg > 1:77718/1‑134 (MQ=255)
tCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCtt < 2:509562/38‑1 (MQ=37)
tCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCtt > 1:509562/1‑38 (MQ=255)
aCGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCGTACCGATGGTCGGCGACGACAGGCcg < 1:390808/134‑1 (MQ=255)
|
TGGCTGGTCTTGTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGGAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCGTACCGATGGTCGGCGACGACAGGCCG > AM260480/2256657‑2256909
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCATTGGCTGGTCTTGTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGGAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCGTACCGATGGTCGGCGACGACAGGCCGCGCTCCAGCTTGGAC > AM260480/2256652‑2256924
|
gcagaagacggcatacgagattagcgagtgtctcgtgggctcgagatgtgtataagagacagGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACC < GWNJ‑0478:712:GW2002102894th:2:1207:16503:24711/88‑1 (MQ=60)
agacagGGCTGGTCTTGTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACC < GWNJ‑0478:712:GW2002102894th:2:1208:15261:11531/144‑1 (MQ=60)
aagagacagGGTCTTGTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACC < GWNJ‑0478:712:GW2002102894th:2:2104:3819:16141/140‑1 (MQ=60)
GGCTGGTCTTGTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGG > GWNJ‑0478:712:GW2002102894th:2:2208:7353:67540/1‑150 (MQ=60)
cggagatgtgtataagagacagCCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCAT < GWNJ‑0478:712:GW2002102894th:2:2101:12532:78414/126‑1 (MQ=60)
TGTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGAGCTCATT < GWNJ‑0478:712:GW2002102894th:2:1110:19888:10294/149‑1 (MQ=60)
gtttagcgagtgtctcgtgggctcggagatgtgtataagagacagTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGC < GWNJ‑0478:712:GW2002102894th:2:1101:12472:28957/105‑1 (MQ=60)
atacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGC < GWNJ‑0478:712:GW2002102894th:2:2212:18032:55803/99‑1 (MQ=60)
GTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGC > GWNJ‑0478:712:GW2002102894th:2:1212:16242:92617/1‑150 (MQ=60)
GTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGC < GWNJ‑0478:712:GW2002102894th:2:1107:12211:75722/150‑1 (MQ=60)
GTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGC < GWNJ‑0478:712:GW2002102894th:2:1102:12636:36514/150‑1 (MQ=60)
gagcGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCctgtctcttatacacatc > GWNJ‑0478:712:GW2002102894th:2:2115:7323:7062/5‑132 (MQ=60)
gcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGC < GWNJ‑0478:712:GW2002102894th:2:1212:17451:47896/97‑1 (MQ=60)
CTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGT > GWNJ‑0478:712:GW2002102894th:2:2114:17214:38060/1‑150 (MQ=60)
GTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGC > GWNJ‑0478:712:GW2002102894th:2:1211:18021:71280/1‑150 (MQ=60)
CTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACctgtctcttatacacatctccg > GWNJ‑0478:712:GW2002102894th:2:1201:1452:39760/1‑126 (MQ=60)
CCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCT > GWNJ‑0478:712:GW2002102894th:2:2207:15972:48642/1‑150 (MQ=60)
CCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCT < GWNJ‑0478:712:GW2002102894th:2:2210:8590:12269/150‑1 (MQ=60)
GTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTG < GWNJ‑0478:712:GW2002102894th:2:2102:8506:94472/150‑1 (MQ=60)
AATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCAC < GWNJ‑0478:712:GW2002102894th:2:1207:7512:5005/150‑1 (MQ=60)
GGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaact > GWNJ‑0478:712:GW2002102894th:2:1208:4719:29713/1‑71 (MQ=60)
GGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCGTACCGATGGT > GWNJ‑0478:712:GW2002102894th:2:1104:6860:89529/1‑150 (MQ=60)
GTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaggaa > GWNJ‑0478:712:GW2002102894th:2:1212:16373:82573/1‑68 (MQ=60)
AACGAAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCGTACCGATGGTCGGCGACGACAGGCCGCGCTCCAGCTTGGAC < GWNJ‑0478:712:GW2002102894th:2:1206:11396:61217/150‑1 (MQ=60)
|
GCCATTGGCTGGTCTTGTGCCAGCGTGAACGGCGGCACCATGACGAAGGGCTGCATCGCCTTGTCCACGCGCTCCGTGGCAATGGCTTCGTAGGTATAGCCCTGGCGCTCGGCGGACGGGCTGAACGGAACCCGGTCCGCGGCCTTGACCAGCAGGATCTCATTGCCGCGCTGCGGCTTGGCGATCAGCTGGTCGACGGTCACGTCGAGGGCCTCGGCCAGCTTGAGCACCGTACCGATGGTCGGCGACGACAGGCCGCGCTCCAGCTTGGAC > AM260480/2256652‑2256924
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
