Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 155 25.8 2285122 88.0% 2010907 104.3

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCCGCGCGTGCAGGCGCGCAGGAACGCGCCGGCGTGCGCGCGGGCGGAATCGTTGCGCCGGGCGCTGGTGGCATCGTTGGCCGGGGGATTCACGGGGTGTGGCGGGGCCA‑GGTGGAGGCGGCGTCCTGCCCGCCCGCGCCGCCATTGGGGGGGGAACCATCAGCGGGTTGTGGGGCGCGGCTGGACATGCGCAGATTATCCGACAATACTAGCCGCTCTCCAATCTGGTGCCCGGCCGGCTGAAACA  >  AM260479/1228009‑1228256
                                                                                                                 |                                                                                                                                       
CGCCGCGCGTGCAGGCGCGCAGGAACGCGCCGGCGTGCGCGCGGGCGGAATCGTTGCGCCGGGCGCTGGTGGCATCGTTGGCCGGGGGATTCACGGGGTGTGGCGGGGCCAGGGTGGAGGCGGCGTCCTGCCCGCCCGCGCCGCCATTGG                                                                                                     >  GWNJ‑0478:712:GW2002102894th:2:2216:8360:67843/1‑150 (MQ=60)
                                                                                                    TGGCGGGGCCAGGGTGGAGGCGGCGTCCTGCCCGCCCGCGCCGCCATTGGGGGGGGAACCATCAGCGGGTTGTGGGGCGCGGCTGGACATGCGCAGATTATCCGACAATACTAGCCGCTCTCCAATCTGGTGCCCGGCCGGCTGAAACA  >  GWNJ‑0478:712:GW2002102894th:2:1209:6645:62209/1‑149 (MQ=60)
                                                                                                                 |                                                                                                                                       
CGCCGCGCGTGCAGGCGCGCAGGAACGCGCCGGCGTGCGCGCGGGCGGAATCGTTGCGCCGGGCGCTGGTGGCATCGTTGGCCGGGGGATTCACGGGGTGTGGCGGGGCCA‑GGTGGAGGCGGCGTCCTGCCCGCCCGCGCCGCCATTGGGGGGGGAACCATCAGCGGGTTGTGGGGCGCGGCTGGACATGCGCAGATTATCCGACAATACTAGCCGCTCTCCAATCTGGTGCCCGGCCGGCTGAAACA  >  AM260479/1228009‑1228256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑