Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TACTGAGGCCCAAACAAGTAGAGCAAAAAATGAATTATCATAAGCACATAACATAATCCGTTAACTCTTTGCTCTATGAACAAGAACCGAAGTTCTAGAAAGGCTGATAGGATTCGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTCTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAATAAATAAAAAAACACCTGCTAAAAAATATCAAATAAAGTAAGGAAGGTAATACAAAAAGAGAGCGTTGGCTCGTGTTACACAAAAGCGGTTTCGAACACA  >  BK006944/357806‑358372
                                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                          
TACTGAGGCCCAAACAAGTAGAGCAAAAAATGAATTATCATAAGCACATAACATAATCCGTTAACTCTTTGCTCTATGAACAAGAACCGAAGTTCTAGAAAGGCTGATAGGATTCGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTG                                                                                                                                                                                                                                                                            >  SRR13385771.1512371/1‑301 (MQ=60)
      GGCCCAAACAAGTAGAGCAAAAAATGAATTATCATAAGCACATAACCTAATCCGTTAACTCTTTGCTCTATGAACAAGAACCGAAGTTCTAGAAAGGCTGATAGGATTCGTACAATCATTTTTAAGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAAAATTATAAATCATAAAATCATCATCATATCTATTTCTAACTTCTAACTATTGCGAAATTCGTTAGAGTCTTTCAACCACGTAGATTGGACAAATCTTTATCTGTGTACTTT                                                                                                                                                                                                                                                                      >  SRR13385771.1407297/1‑301 (MQ=60)
           AAACAAGTAGAACAAAAAATGAATTATCATAAGCACATAACATAATCCGTTAACTCTTTGTTCTATTAACAAGAACCGAAGTTCTAGAAAGGCTGATAGGATTCGTACAGTCATTTTGACGGTCGAACTTCTGTAGTTACTCTATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATA                                                                                                                                                                                                                                                                 <  SRR13385771.333242/301‑1 (MQ=60)
                               GAATTAGCATAAGCACATAACATAATCCGTTAACTCTTTGCTCGATGAACAAGAACCGAAGTTCTAGAAAGGCTGATAGGATTCGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGT                                                                                                                                                                                                                                              <  SRR13385771.161731/300‑1 (MQ=60)
                                      CATAAGCACATAACATAATCCGTTAACTCTTTGCTCTATGAACAAGAACCGAAGTTCTAGAAAGGCTGATAGGATTCGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATCCTTCACATCATACCTGTCTTTTTAT                                                                                                                                                                                                                                      >  SRR13385771.601836/1‑301 (MQ=60)
                                                                    TTGCTCTATGAACAAGAACCGAAGTTCTAGAAAGGCTGAGAGGATTCGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACATAAAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCGATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTT                                                                                                                                                                                                          <  SRR13385771.219787/300‑1 (MQ=60)
                                                                           ATGAACAAGAACCGAAGTTCTAGAAAGGCTGATAGGATTCGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCG                                                                                                                                                                                                  >  SRR13385771.1009133/1‑300 (MQ=60)
                                                                                                AGAAAGGCTGATAGGATTCGTACAATCATTTTTACTGTCGAACTTCTGTAGTTCCTCGATATATAAATTTAAATAACGGAAATAAAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTT                                                                                                                                                                             <  SRR13385771.983630/301‑1 (MQ=60)
                                                                                                 AAAAGTCTGAGAGGATTCGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGTACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACGATGACGCAATTCGTTAGAGTCTTGCCACCGCGTCGATTGTACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTAATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTT                                                                                                                                                                           <  SRR13385771.391094/301‑1 (MQ=60)
                                                                                                     GGCTGATAGGATTCGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAA                                                                                                                                                                       <  SRR13385771.226650/301‑1 (MQ=60)
                                                                                                     GGCTGATAGGATGCGTACAATCAGTTTTACGGTCGAACTTCTGTAGTTACTCGGTATATAAATATAAATAACGGACAT‑AAAAAAAAAAATGGTAACATTATAAATCATAAAATCATAATCATATCGATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCTCCACGTCGATTTGACAAATCTTTATCTTTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAA                                                                                                                                                                       <  SRR13385771.552294/301‑1 (MQ=60)
                                                                                                     GGCGGATAGGATTCGTACAATCAGTTTGACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGGGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACCTCTAATATACTGTACATCATACCTGTCTTTccacgctgcccccgtggagcccccccccccccccccccccccccccccccccccccccccccccccc                                                                                                                                                                       <  SRR13385771.226627/301‑68 (MQ=60)
                                                                                                                  CGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATT                                                                                                                                                           <  SRR13385771.1705675/300‑1 (MQ=60)
                                                                                                                           ATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTA                                                                                                                                                 <  SRR13385771.1761827/301‑1 (MQ=60)
                                                                                                                               TTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATG                                                                                                                                              <  SRR13385771.404018/300‑1 (MQ=60)
                                                                                                                               TTACGGTCAAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑‑AAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTT                                                                                                                                                   <  SRR13385771.912006/294‑1 (MQ=60)
                                                                                                                                TACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACTACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCACCTTTTCGCGCGAACAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGC                                                                                                                                            >  SRR13385771.1851707/1‑301 (MQ=60)
                                                                                                                                                              ATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAAGATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTG                                                                                                              <  SRR13385771.334306/301‑1 (MQ=60)
                                                                                                                                                                      AAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAA                                                                                                      <  SRR13385771.366101/301‑1 (MQ=60)
                                                                                                                                                                                                                ATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAATAAATAAAAAAACACCTGCTAAAAAATATCAAATAAAGTA                                                              >  SRR13385771.443621/1‑300 (MQ=60)
                                                                                                                                                                                                                 AAAAATCATAATCATATCTCTTTCTCACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAATAAATAAAAAAACACCTGCTAAAAAATATCAAATAAAGTAAG                                                            <  SRR13385771.1485614/301‑1 (MQ=60)
                                                                                                                                                                                                                                     TTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAATAAATAAAAAAACACCTGCTAAAAAATAACAAATAAAGAAAGGAAGGTAATAAAAAAAG                                           >  SRR13385771.38809/1‑298 (MQ=60)
                                                                                                                                                                                                                                          AACTTCTGACTATGGCGCAATTCGTTAGAGTGTTTCCACCACGTCGATTGGAAGAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCGTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAATAAATAAAAAAACACCTGCTAAAAAATATCAAATAAAGTAAGGAAGGTAATACAAAAAGAGAGCGTT                                   <  SRR13385771.784932/301‑1 (MQ=60)
                                                                                                                                                                                                                                                     ATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAACTAAATAAAAAAACACCTGCTAAAAAATATCAAATAAAGTAAGGAAGGTAATACAAAAAGAGAGCGTTGGCTCGTGTT                         >  SRR13385771.1745652/1‑300 (MQ=60)
                                                                                                                                                                                                                                                           CAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTAGTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAATAAATAAAAAAACACCTGCTAAAAAATATCAAATAAAGTAAGGAAGGTAATACAAAAAGAGAGCGTTGGCTCGTGTTACACAAA                  <  SRR13385771.1332318/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                            TCCACCACGTCGATTGGACGAATCTTTATCTGTGTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGCTGCCTTTTTGACACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAATAAATAAAAAAACACCTGCTCAAAAATATCAAATAAAGTAAGGAAGGTAATACAAAAAGAGAGCGTTGGCTCGTGTTACACAAAAGCGGATTCGAACACC  >  SRR13385771.1407318/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                     GTATCTGTGTACTTCTAATATACTGTACAGCATACCTGTCTTTTTATGCGGCTATTGTGGAGGAACCGTCATCTTTGCGCGCTAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTGGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAATAAATAAAAAAACACCTGCTAAAAAATATCAAATAAAGTAAGGAAGGTAATACAAA                                              <  SRR13385771.271861/231‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                          
TACTGAGGCCCAAACAAGTAGAGCAAAAAATGAATTATCATAAGCACATAACATAATCCGTTAACTCTTTGCTCTATGAACAAGAACCGAAGTTCTAGAAAGGCTGATAGGATTCGTACAATCATTTTTACGGTCGAACTTCTGTAGTTACTCGATATATAAATATAAATAACGGACAT‑AAAAAAAAAAATTGTAACATTATAAATCATAAAATCATAATCATATCTATTTCTAACTTCTGACTATTGCGCAATTCGTTAGAGTCTTTCCACCACGTCGATTGGACAAATCTTTATCTGTCTACTTCTAATATACTGTACATCATACCTGTCTTTTTATGCTGCTATTGTGGAGGAACCGTCATCTTTTCGCGCGAAAAAACAATATGATGCCTTTTTGAAACATGTTATTATTTGATTTTTTAATGGCTTCTATTACGCGTCGTGGTTGGTGAACCTGGTACAAAATAAATAAAAAAACACCTGCTAAAAAATATCAAATAAAGTAAGGAAGGTAATACAAAAAGAGAGCGTTGGCTCGTGTTACACAAAAGCGGTTTCGAACACA  >  BK006944/357806‑358372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑